Array 1 69861-70094 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020346.1 Pasteurella multocida subsp. multocida strain CIRMBP-0884 plasmid unnamed, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 69861 36 100.0 30 .................................... CGAGCGAGTAAAAACATCATTTTCTCGTAC 69927 36 100.0 30 .................................... AACCCCTGCATTGTAGGGTTAAGCTTTCCT 69993 36 100.0 30 .................................... TTTGACGCCACTGGCGAGAACCGTCAGATA 70059 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 100.0 30 GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Left flank : ACGCTATGTTTTTTTTAAGCTTGTCGACAATTTTGTCTGAAATGATTAATTTCATATCCATTTCGGGTACCTATAAATTTTTCATAAATATTATTATTTGCTATAAACATAAATCCTCCGCATATTGTGTATATACAATTGTATATACAATAAAAAAAAAAGTCAACCCTTTCTTAGCAAAAAAATATTACTTACCTTTATTCAGGTGAACGGGTGACAAATTATTAAGCAATTTCTTTAAAAGATGAGGGGAATTTACACACCACTCACAAAACTGCGTTTTGCCTTTAAAGCCAGTAATATCAAGGGATTGTAAAAAAGCTGGTTAAAAGATGCGCGTTTTTTTTGTGGTTCAAATTTGAACCAAAAAATAGCACAAAAATACAGCTAAACAGGCGGTTGGATTTGGAGTAGACCCGTTAAAAATGAAAAAAGACTACGCTATTTTTCAATTTTAACGTGCCAAGATTATACCAGTTTTTAGAAAAGATATTATGTCA # Right flank : TCTCGTGTCCCTTATCCCTTGTGGCACAAGGGATAAGGGCGTTTTTAATGCTCAAAAATTACTTGAATTCACGATATTAAGCATTCTATTTTTAGAAAATTTTTCTTAAAAAGTCATTGATTTTGTCTGACTGGGATAACATCTGTTGTATGTTACCCCTGGTTCTGAGATGCGCTAGGCTAAAATAGAGAATAGTCTTTTTGTCTATTTTTATAGAATAGGTAAATAGTTTACTTAGAACAGCAACATTTGATTTGCGTTTACTTTTTTCTCTTGAAGTCTCAATCTCCCCAAGAGTATTTTCATTCCTGCAAATTGCTTTTCTGTCACTTCTAAACAACGTATTGAACCTTCTTCAGGGAGGTGTTCACTGAGCCGTTTATTATGCTTTTGCATGGAGTCTCGACCTCGAATAATTCTAGCATATACAGAAAGTTGTAACATTTGATAACCATCTTTTAATAAAAATTGACGGAATTGATTTGCTGCTTTACGTTTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGTTCCCTCTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 889386-886657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020345.1 Pasteurella multocida subsp. multocida strain CIRMBP-0884 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 889385 28 100.0 32 ............................ AATCGCCCAGCGCTACATAATCTCGATGAAGC 889325 28 100.0 32 ............................ ACCTTTAGTGTCAGCAGATTTTAAAACAGATT 889265 28 100.0 32 ............................ AGTTTCCGTTTTGACGAAGTTTGAAAGTTGTT 889205 28 100.0 32 ............................ AGTCTCGGTTTATCACGTCTTTTTTTCTGCGT 889145 28 100.0 32 ............................ TCATCAGTGGATTAGCGAGCGTTGCCGGCACA 889085 28 100.0 32 ............................ ACATTCCGACTATGTCTTCATAACCGCATGAA 889025 28 100.0 32 ............................ CACGGCGGGAAGTAGTATTTTGAATCTTTCTG 888965 28 100.0 32 ............................ ATGCGAATTAAGTTTAAAAACAACTCGTCGAT 888905 28 100.0 32 ............................ ATTAATCAAATGCTTACCAAGGCTACTACTAA 888845 28 100.0 32 ............................ GAGCAATTCACGTTGTGCATAACGCACGTTTA 888785 28 100.0 32 ............................ GTCAGATATTTTTACAAGAATGCCTGCTTGGA 888725 28 100.0 32 ............................ GCACTTTGTGCATCGGCTTTTTTATTGCTCCG 888665 28 100.0 32 ............................ AATCTCTAATTGTTCTTTCCGCTCTGTCATTT 888605 28 100.0 32 ............................ GAACATATCCAATTTTAATTTGCTGATTTATT 888545 28 100.0 32 ............................ TTCCCAATTCGAGTGGTATTGGCTTGGTAAAT 888485 28 100.0 32 ............................ GTCAAGTGTTTGAAAATATGCTCTACGCCTAC 888425 28 100.0 32 ............................ GCACTTGATCCGCCACATCCTGCGGAATGGTT 888365 28 100.0 32 ............................ TAAGCTTGTGGCAGTCGGTGTGCAAGTGCCAG 888305 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 888245 28 100.0 32 ............................ ATTTTGTCTAAAATACCAATCACAATGTCGTG 888185 28 100.0 32 ............................ TAAAACATACCGATGGCTTTTCATCTCTTGAC 888125 28 100.0 33 ............................ CTGAACGCGTTTATTTTTTCGTGAATAATAAAA 888064 28 100.0 32 ............................ GATTTGCGAACTTGACAACGCCAACCAGATTT 888004 28 100.0 32 ............................ ATTTCCCATACGATTAGCATAAACTCGGTTAG 887944 28 100.0 32 ............................ ACACCGACAACCATCGCATCTGATGCTTATCA 887884 28 100.0 32 ............................ GCGGTATGTCGTCAGCCCAATTAAAAAACTGC 887824 28 100.0 32 ............................ ATTATTTCGTGCGTATGGGCTCCAGCCACCAC 887764 28 100.0 32 ............................ ATAGCGGCTGAACTCTCAAAAGATTGACCGAG 887704 28 100.0 32 ............................ TAAACAAACAAGCTAGAGATAATCCCCAGTTA 887644 28 100.0 32 ............................ AGCTGGGCGGATTAGAGAATTTACGGTTTAAC 887584 28 100.0 32 ............................ GGCTGGATCATAACGCCCACCGTTACCCGTGT 887524 28 100.0 32 ............................ AACCGATCCAACTCACCATGGAGGAAGCGAAT 887464 28 100.0 32 ............................ AAAAACCGATCTTGTGTACAAGTATCAAAAGA 887404 28 100.0 32 ............................ CACTATTATTAATAAGTTGTTGATGTTCTGCG 887344 28 100.0 32 ............................ TTGGTGATTCGTACAGTTGAAATCAACGGCAC 887284 28 100.0 32 ............................ CGACGGAACACCGTTTGCAGCCCGCAAACCGC 887224 28 100.0 32 ............................ AATTTCAATCATCTCGAAAATATCTTTACAAG 887164 28 100.0 32 ............................ ATTGATTGAGAGTGGATATGTTTTCTCACCGA 887104 28 100.0 32 ............................ TTTCAGTCTCTGACCGCCAGCATAGACCCAAC 887044 28 100.0 32 ............................ AGAAGAACAAGAAAAGCAGTTGAAGAAAAAAG 886984 28 100.0 32 ............................ TAGTAAACGCAATGAGCCTGCCGCCACAAGTG 886924 28 100.0 32 ............................ TTGGATCGCCATACCGCCATTACCATTAATTT 886864 28 100.0 32 ............................ ATAAAGTTTCCCGCGCTAAAAAATCATATTAT 886804 28 100.0 32 ............................ GACCCCATTGGTCTAATTTCGCCCACGGGATT 886744 28 100.0 32 ............................ TTCCGCATATTCAACCGTATTATCTTCAGTTG 886684 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGCCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTTCTAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1389183-1390681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020345.1 Pasteurella multocida subsp. multocida strain CIRMBP-0884 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 1389183 28 100.0 32 ............................ TGCATTATGTGAAAATTTAAAGCTGGGTGGAA 1389243 28 100.0 32 ............................ TTTCATATTTAATTTCACTTTACAAATCTTAT 1389303 28 100.0 32 ............................ ACAAGCTCCACAATGCTAAAGCCATAATAAAT 1389363 28 100.0 32 ............................ CTTAAAAATTGACCCGCTAAAAGCGGGCCATT 1389423 28 100.0 32 ............................ TGATGTGGGTGAATTGGTCGCAATAATACTCG 1389483 28 100.0 32 ............................ TTTTGCACAAACAATTAGGTCACCAATCTATC 1389543 28 100.0 32 ............................ TTTAACTATGCAGCAAGCGAAACCAAGGAAGA 1389603 28 100.0 32 ............................ GTTTGCAATGTGCCAGTTTTAATACCGACCGT 1389663 28 100.0 32 ............................ TCTTTTCTCAGGATTGTCTTTTAAATCCTGAT 1389723 28 100.0 32 ............................ ACCAGAAGAACTGTATAGCGAAATGCTTTATT 1389783 28 100.0 32 ............................ TGAATAACGTATTCAGACGGAATGCCACCTTC 1389843 28 100.0 32 ............................ TGTGATTTTTACTCTTTCATTGGTTATTTTCT 1389903 28 100.0 32 ............................ CACCTAATGGGTTTAATTGTCGCTGTGCGGTG 1389963 28 100.0 32 ............................ TTCAAAGCTTTCCACCAGCTCTTGGCGTTGAC 1390023 28 100.0 32 ............................ TTTTGTTGCGGCACCGCCACCGCAGAAAATGG 1390083 28 100.0 32 ............................ GTTTTTTACTGAGCAAAGCGTCATTTTATTAA 1390143 28 100.0 32 ............................ GTTTTGAGAACACCTTCAATCCACGGAATAAA 1390203 28 100.0 32 ............................ ATTGCCGCCATTGTCTCGAACTCTTGCCCTGT 1390263 28 100.0 32 ............................ ACTAATATTCACTTCTTTGGCTGTTGTGCTAA 1390323 28 100.0 32 ............................ TTTGCGAGCAAAAAACCAGATAATTCCCGCAA 1390383 28 100.0 32 ............................ TATCTTCCACATTCCACGTTATATCGATTACA 1390443 28 96.4 124 ............G............... TCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAATCTTTGATTAATTCGTTATGAGTTTTATTCGTAGGCAGCTTAGAAAGACTGGAGTGAGAATGTCGTCGAAAACTTACA 1390595 28 96.4 32 ............G............... GCGTGCTAGTTTGTCTGCTGTTGCTTTCAAGA 1390655 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ============================================================================================================================ ================== 24 28 99.1 36 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGGATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCCCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACAAAAAATATTGGTAAACGTCGCAAATCCAATACCCCCCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGTTCCATACTTGATGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATGACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCTATCAGTTTGGGATCCGTGGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGAATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //