Array 1 187764-189074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRB010000010.1 Nocardia farcinica strain N-7 NODE_10_length_189630_cov_42.523137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 187764 28 100.0 33 ............................ CGGCACCCCGGCGGCGCTGCACTGGTCGCGCAG 187825 28 100.0 33 ............................ CGCTTGCCGCACGTTGATGAGGTGGCCGACGGT 187886 28 100.0 33 ............................ CGCCAGCATCAACGCCGTGTACGTCTTGCCCGA 187947 28 100.0 33 ............................ CCGGCCATGCAGTTCCCCAGCTGCTCGTGGAAA 188008 28 100.0 33 ............................ CAACAACGCAAGCCCGGTGCCGTTCGCCAGCGT 188069 28 100.0 33 ............................ CCCGCGACAGGGCCGCGTCCTCGCGATCGGCGC 188130 28 100.0 33 ............................ CTGCTACCCCGACACCGAGGCGGTGCCCGATGC 188191 28 100.0 33 ............................ CGTCGGGGCCTGGCGTTCCCGACAGCTGTTCGT 188252 28 100.0 33 ............................ CGCTATGCCGCGTTCCTCGCCGCCGACCGCGCC 188313 28 100.0 33 ............................ CAAGTCGGTCATCGGGCAATCTCCAGGGTGAGG 188374 28 100.0 33 ............................ CTCTGCGCGCGCCGAATTCGCCAACCTCTACCG 188435 28 100.0 33 ............................ CTCGATGGCGGTGTGTTGGACGAGCGCGAGCGG 188496 28 100.0 35 ............................ ACAAGACAGGCACCGGGTAGTCGGTAGCTACCCGG 188559 28 100.0 33 ............................ CTTCGTCGTGAGCGTGGACGGCGCAATCGCCAC 188620 28 100.0 33 ............................ GTATTGGCGGATCAGTTGATGCGCTGTTGCGTC 188681 28 100.0 33 ............................ CAACATCCCGCTCTTTCAACGAGCACACCCAAT 188742 28 100.0 33 ............................ CTGCGGGCCGGGCACCCACTGCGGGGTGTCGCC 188803 28 100.0 33 ............................ CCCGCCGCGGTCGGCGTCGGGGAACGCCCATGC 188864 28 100.0 33 ............................ CCCCGACGACCAGGCCGTGCGCTCACAGGTCAA 188925 28 100.0 33 ............................ CATGACGCACCAACTCGGTAGCGCGTGCACGGA 188986 28 100.0 33 ............................ CCTGAGCCGCACACTGAGCAAGGCCTCGATCCC 189047 28 96.4 0 ..........................G. | ========== ====== ====== ====== ============================ =================================== ================== 22 28 99.8 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CAGTACGGTAGGTGAATTCGCTCGCGAATTCGGGGAAGAGGGTACCGGGTTTCTGGAAGAGTTCGAGCAGGTTGAGTGGGCAGGTGGAGCCCGGTCGGTCGATATCGCGGCAGCCTTCGGCCAAGAGCGCCTGGTGGACACGTTCGACGGGTATGCCGTCGAGTTCCTCGGGCCGGTATTGCAGGGCCATCCCGTACCGGGAGGGTCGGGCCTCCTGACCAGGGCAATGACGCCCAGGTGCAGCAGAGGCGTGGCGGTGGCGAAGAAGGTGTAGGCGGGCAGGATGACTTCGTCGCCAGGACTCAGGCCGTAGGCGGCGTACATCGAGTACAGTCCGGCGATGCCGGAGCTGGTGAGCACTGCGTATCGGGCGCCGAAGTAGGCGGCGGCGACGACGTCTTCGAGGTCGGCGATGATACGGCGCATGTCAGGGAGGGAGGAGGCGACTGAAAGTGAATAAAAACCATGGACTTGGGCTGAGGAACCGCAGGTCAGGAAGT # Right flank : CTCTTGGCGCTACCGACCGGCAGGGCGGTCGAGATACGCCCGGCGCCCACGGGAGTAACCACAGTTGTTCAATCGTCGTAGTCGCTGGGCCGAAAGGCCATTGCGAACCCGCGACGAGTGGCGGGCCGATCGCGAACGCGGAGCCGTCCTGGGCAACCGTCACCGCTGTAATGCGCCGTTGACGGCTCTACGTGAGACGCACTTGGCGCGGCCAACCAGACATCGTTGATGGACACAAAGCCAGTCGAGCGAGCATGAACACACAGGCGCGCCGGGCCTAGCACGATAGCCGCGCCGGTCCCGGATACTTCTACCGGTTCGACCAACCGTCGCGTGCTCCGCTTACCCCAACTGCGGTCGGAGCATTCGCGCACCCGGCGGTATCCCACCCCGGTAAGCCAATTGCACGCGTCCACCTGTCCCAGCGCGTGGGGGCTGCTGCAGGGGTAGGTGACACCTGATGTGGCTTGCCTTCGGGTGGGCTGGAAGGATGTCGCTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10-282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRB010000034.1 Nocardia farcinica strain N-7 NODE_34_length_305_cov_0.511236, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 71 29 100.0 32 ............................. GGGGTGACACTGGTCCGCAACGAGACCGGTAA 132 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 193 29 100.0 32 ............................. TCGTAGTTGTACTGCAGCACGGTCGCGATACC 254 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CGAGCAGGCG # Right flank : TCGCCTCTGGAGCCTGGCACGAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 136629-138061 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRB010000008.1 Nocardia farcinica strain N-7 NODE_8_length_242085_cov_43.562122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================== ================== 136629 29 100.0 32 ............................. CTGCGCACCGTCGATGCCACGCCCTCGACCAG 136690 29 100.0 32 ............................. AAGCGTGGCCGCACCGGCACCGCTGGCCGCTG 136751 29 100.0 32 ............................. GCTGAACCGCACGGCGTGTGGGGTGGCTACCG 136812 29 100.0 32 ............................. CGGTACACCGAGCTTTTCGTGGAGGACGAGTA 136873 29 100.0 32 ............................. GATCGCGTTGCCTTGCAGGATCAGCTGATTGA 136934 29 100.0 32 ............................. GCCGAAACCAGCGCGTGGGGACGGGCGCTCGT 136995 29 100.0 32 ............................. TCCCCTGCCGCACGGTGCTCGTTTTCCTCGGC 137056 29 100.0 32 ............................. ACGGTCGCCATGTCGCTCTGGTGGATGGACCA 137117 29 100.0 32 ............................. ACGTGATACAGCGACCGGTACAGCTCAGCTGC 137178 29 100.0 32 ............................. CGGTAGGTCACCGCCGAACGCGCGAACACCCG 137239 29 100.0 38 ............................. CCCCCCCCCCGGACCCACCGGAACCGCCGGTGCCACCC 137306 29 100.0 32 ............................. GCTTCCCACTGCTCGCGCGTGTACACCGTCAT 137367 29 100.0 32 ............................. GTCGTCCTGCCAAGCAATCAATTCCATGTCCA 137428 29 100.0 32 ............................. TGTTGGATCACCGGGCCGAGCGCGTCGAAGAC 137489 29 100.0 32 ............................. GCGATGATCTCGCCCACGGTGGCGAACGTGGC 137550 29 100.0 32 ............................. CACCTGTGCCCGAAGGCGGCGGCTTTACAGGC 137611 28 96.6 32 ....-........................ TCGTTCTTGCGACGGGGATCTCGTCGCAGTCA 137671 29 100.0 33 ............................. TTGGAGGCACCCGAGCGGCGGTCGACCTGCTCC 137733 29 100.0 32 ............................. CCGTCCGGCACGCCGCCGGGCCAGAAGACCTC 137794 29 100.0 32 ............................. CAGCCCGACGACCGCGTGGTCAGCCTGAGCAA 137855 29 100.0 32 ............................. TATGCGGAGGAAGTAGAAGAGGTGGTAGCGCT 137916 29 96.6 86 ......................C...... CGGATTGCGGCTTTGTCGTCTCCTTCGAGAAGTGCCTCCCGCGGGAGGGATGAGCCCGAAGACTCGACGCGTTGTCCGCCAGCGGG 138031 29 82.8 0 .........C....T.....A......GG | A,T [138048,138056] ========== ====== ====== ====== ============================= ====================================================================================== ================== 23 29 99.0 35 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CCCGAACACAACCGAGCCACATCCTTGCCCGCGCCGTGCGCCCGCACCAGATGCGCGGTGATCTGGTCCAGATCCAGATGCTGGGTGTCGATCAACTCGGTCTCCGGCGCACAGTGCGCAAGCACCGCCGGATCGAGATAGGTCCCCGCGTAGAGACAGACAGGACTCGTGCGCAGCAGATTCACCGCACGCACGGTCAGCAGGTCCGCCGCGCCCGGCCCGGCCCCGATGAAATGCACGGTCATGAGGGCGAGTGTAGGGATCTCCGGATGGGCGGTCCGGGCTGCGGTGGTCATGGGTCGTCGCCGGACCAGGCACGTGGGGCGTGGTCGGTCTCTCACGCGACCCTTGGGAAGATCGCCGGCAACTGAAATGGGATCCCGCAGGATCGGCGACGTACGATGGCGGCGGCCTGCCCGTCTTGTCCTTCAGCGAGGTACAGCGGTGGAAAGTGAATGAAAAACGGGGTTGGGGGCTGAGAACTCGCAGGTCAGGAAGTG # Right flank : GTTGACGCCGGGAACCCGGAGGCCGGTTTCCTCTTCGACCTCGCGTGCTAAGACTTGGTCGAGGATCTCCCCGGGTTCGACTTTGCCGCTGGGCAGTTCCCAAATGCCGCCCATGAAGTCGTTGCCGGGTGGGCGCAGCAGCAGGATGCGGCTGTCGTGTTCCACGATCGCGCCGACGACGAGTTGCTGGACGCCGTCGCATTCGGCTCGGGCGGTGAGGTCTTCGAGGCGGGTCGACATCAGGTTCATCCATTTCGCCCGGAAGGAGCAGCTGACGGTTGGCGTGCGTGTCGGACTGCGTCGGTGTACAGCTCGGTGGTCAATTCCTCTGGGGTGACGCCGAGTTCTGTGAGGATCGCGCGCAGTTCTGCGAAGGCTTGGGGCAGGTCGGGTTCTTCGGCTTGGGTTTCGAGCTCGAGGTAGGTGCCGTCGATTTCCGGGACCTGGGCGATGGTGGCGAGCATGCGCCTGCCGGCGGCGGTGAACTGGAAGTTTTCGCA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 145229-147151 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRB010000008.1 Nocardia farcinica strain N-7 NODE_8_length_242085_cov_43.562122, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 145229 29 100.0 32 ............................. TGCTGGCGCGCGTTCTGGGCGCGGATGTAGTC 145290 29 100.0 32 ............................. CGCTGCAACCCCTTCGGCGTCACCCGCGGCTG 145351 29 100.0 32 ............................. AGCGCGCTGTACACCGCGTCGCCGTCGTCGTC 145412 29 100.0 32 ............................. GGTGCGCGATCTCCTGGCCGAAGGAGTTCGAC 145473 29 100.0 32 ............................. ATCGACATCCGCACCGACGCGGAGAAGGCCGC 145534 29 100.0 32 ............................. TGCCCCATCTATCAGCCGCACCGGGTCGACAG 145595 29 100.0 32 ............................. GCGATCGACACCGTGAAGGGCTGGTTCGAGAA 145656 29 100.0 32 ............................. TTGAACTCCTCCTCGTCGAACCACGGCACGTC 145717 29 100.0 32 ............................. GTGAACGTGGTGTTGTCGTCGGCGCCGCCGAT 145778 29 100.0 32 ............................. TCGGCGCACCGCTCCAGGCTGCCGGTCGATCG 145839 29 100.0 32 ............................. ATCGCGGGATCGGTCCAGCTCGGGCGCCCCGT 145900 29 100.0 32 ............................. AGCTGGCCGCGCTCGAACCCCCGGCCCCGGAG 145961 29 100.0 32 ............................. ACCAAGGCGTGCGCGGTCAAGGTGAAGGCCGG 146022 29 96.6 32 ............................T TTCGCCGAGGTCTTCGGCACGGACGTGGCGAC 146083 29 100.0 32 ............................. GGGGAGCTGTGCAGGATCAGCCACCCCGCGCG 146144 29 100.0 32 ............................. CCCGCGCTCGCCGAAGACCGCGCGCGGATCGC 146205 29 100.0 32 ............................. AGCTGATGGACCTGGTGTATGCGATCCTGCTG 146266 29 100.0 32 ............................. GCCATCTACTACTGGACCGGGGAGTCGTTCAT 146327 29 100.0 32 ............................. CCCTGAGCTGGAATTGGCACGTGACCCGGAAA 146388 29 100.0 32 ............................. TGGTCACACTGCCTGGCGACGTGTACTGCTCG 146449 29 96.6 35 ............................A CGAGGCCGCGCTGGCGGCCAGCCCGTCGACGACGG 146513 29 100.0 32 ............................. CGCACCATCGCGAACCTGCTCAAGTCGCAAGG 146574 29 100.0 32 ............................. CCGCTGCTGGGCATCATCGACTTCGAGGCGAA 146635 29 100.0 32 ............................. CCGCCATCGCGAACGCCGTCGTCGCTGGGTCC 146696 29 100.0 32 ............................. GAGCGCCTGACCGGGATCATCGTCGAGCAGGC 146757 29 100.0 32 ............................. CCGGCGCCGGACCCCACCGCGACCGCCAGCCC 146818 29 100.0 32 ............................. GGGTTGACACTGGTCCGCAACGAGACCGGTAA 146879 29 100.0 32 ............................. CGCATCGTGACCTGAGCCTTCTTCGGCTTGAC 146940 29 100.0 32 ............................. TCGAAGTTGTACTGCAGCACGGTCGCGATACC 147001 29 100.0 32 ............................. TCGCCTCTGGAGCCTGGCACGAAACGCTCGGC 147062 29 100.0 32 ............................. GCCGCAACTTCCTCGCTCTGGGTGTGGCCGCC 147123 29 93.1 0 ..............T.T............ | ========== ====== ====== ====== ============================= =================================== ================== 32 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCTCACCCTGGATGGGTATGGAACGGTGCTCACCGAAGTCGCCGCAACCTTGGAACCGCATCGCCTGGCCGGTCACCTCTACGATCTCGCCCGAGCCTTCACGGCCTTCTACGACACCTGCCCCGTCCTCACCGCCCCCGACCAGGTCCGCGGCAACCGCCTGGCCCTCACCCAGCTCACCGCCCGAACCCTCGCCCACGGCCTGGGACTCCTGGGAATCGCCGCACCGGAACGACTCTGAACAGGGGCGTGGTAGCCCGAACTCCGCCGACGAGGTCCTGTTGTTCATGCGGGACGACAAGCCCCGAGATTCCCGGCCCGGGAATGTGGGCATTGCCGGGCGGCTCGCGACCCCGGCGAAAGGCAACTTGAATGGGAGTTCCACGGGACCGGCGACGTACGATGGCGGCGGCCTGCCCATTCTGTCCCTCAGCGAGGTACATCGATTGAAAGTGAATGAAAACCGGGATTCGGGGCCGAGAACCCGCAGGTCAAGAAGT # Right flank : CTGGCTCTCGTGTCCTGCGTCGACGGCTACGAGATGCCCCCGCGAACGCGGAAATGACTGGGGCGCCGCTTCCGCGGTCGTGAAGGCGCTGCCATCGCCCTTCCGCGCGGAGGTCGACCCCCTTTGACGGCGGCTGTTCCAATTTCGGAGCAGGAGGGTCAGCTCACCCCCACCAGCGCCGCCAACGCCATTTCGCGTAGGGCCGGTCGGACGCGCTCCGCGTCGGAGGCGGTGGCGCTGTGCGGGGTCGAGTTCATCAGTCCGAACACCGCGTGGGCCCGTACGCGGGCTTCGCCTTCGGACAGCTGTGGGTGGACCCGCTGTAGCGCGTCCACCCACAGTTCGACGTATTGCCGCTGGGTGCGGCGGACGCGGCGGCGGGCGTCGTCGGGCATCTGGTCCAGGTCGCGGTCCTGGATGCGGATGAGTTCGGGCTCGCCGAGGGCGAAGTCGAGGTGGAAGTCGACGAGTCCGGCGATGACCGATCGCGGGTCTCCGCC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 171-2286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRB010000009.1 Nocardia farcinica strain N-7 NODE_9_length_214840_cov_41.290467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================== ================== 171 29 100.0 32 ............................. TCCGGCACGCTGACGAGGGTCGCGGCGACGAC 232 29 100.0 32 ............................. CGCCACCAGCGCGAGCCGCACCTGCGGCGGCA 293 29 100.0 32 ............................. GGCCCGATGTCGTCGACGCGCCACCGCAGCAA 354 29 100.0 32 ............................. TGTTCCGGCGCAATGGCGCTACGACTGGCTGC 415 29 100.0 32 ............................. GTGCAGGTGGCCTCGCAGCTGGTCACCAACGG 476 29 100.0 32 ............................. TTCGCCTCGATCCGCGCGAGCGCCTGCGCCGA 537 29 100.0 32 ............................. TCTTCGGCTTTCGCGCGGTCGAGGAATAGGCG 598 29 100.0 32 ............................. TTGCCCTGTGCGGCGTAATCGACGAGCAGGGC 659 29 100.0 32 ............................. GCGTTGCGGAACCGGATGAACGACTCCCCGGT 720 29 100.0 32 ............................. GCGGGCGACAAGATCGACCCCGTGGTCGCCCT 781 29 100.0 32 ............................. CGTGCACCGCGGGGGCGAACTCGTCGGTCACG 842 29 100.0 32 ............................. GCCGACTGCGTCGGCGTGAGGAAAGATCGACT 903 29 100.0 32 ............................. GGCGCCGACGGGTCGCGCTGGAACCTCACCGA 964 29 100.0 32 ............................. TGCTCGATTGCGGCGTACCGCAGATGGGCGGT 1025 29 100.0 32 ............................. ATCGCCGCCTCGCTGCGCTACACGGTGAGCCG 1086 29 96.6 32 ............................G CTCCAGGCCCTCGATCCCCATCTCGCCGAGAA 1147 29 100.0 32 ............................. GTGACAAACGTCCGGGCTGAATCGGCATACGG 1208 29 100.0 32 ............................. GACGCACTGGACCGTGTGAGATTCCAGCGAAT 1269 29 100.0 32 ............................. TGCGCCGGGCAAACGGCGGTCGATACGTCCCG 1330 29 100.0 32 ............................. ATGTGTTCGACAGGTTTGCCCAGAGATCGCGA 1391 29 100.0 32 ............................. AACGGCAGGGCCCGCTGGGGCGATCAGGAATA 1452 29 100.0 32 ............................. CAGCTCGGCAGCACCGCGAGGATCTGCTCTCG 1513 29 100.0 32 ............................. GGCTTGCCGCCGCCTTTCTCCAGCGTGGCGTC 1574 29 96.6 32 ............................G CCTTCGGCAGTCGTACGTATTGCTCGGCGCAT 1635 29 100.0 32 ............................. GTGCGCACGGCGGCCAGTTTCTTGCTCAGCGA 1696 29 100.0 32 ............................. CAGCCCTTCACGGTGTCGATCGCGCTGCCGAG 1757 29 100.0 32 ............................. TGCCCGTAGTAGTGCCGTGCCATGCCGCGAGG 1818 29 100.0 32 ............................. GGGTCGAACCACCGAAAATCCAAGCAGGGGTT 1879 29 100.0 32 ............................. TGTCATGTCGGGTCGTCTTCATCCTGGTGGCC 1940 29 100.0 32 ............................. CCGCCCAGTCGCGCTGAGTCGCTGAGGCGGCT 2001 29 100.0 32 ............................. GCATCGGCGGTCGCCCTCGAAGCGCTGTCCAC 2062 28 96.6 32 ....................-........ CAGCCGTCGTTGAGCTCGTTGCCGATCCGGCC 2122 29 100.0 32 ............................. GGATGCGCTTGGAGACGGTCACAGCGGTACCA 2183 29 96.6 47 .........................A... CCCATCTGCTTGTAGGAGGACCGTCGTTTCGGTGCGCCGAGCTTGAC 2259 28 72.4 0 A..T....G..A..T..-C........A. | ========== ====== ====== ====== ============================= =============================================== ================== 35 29 98.8 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : CTACCACCGGCGGCGCCGGCAGACCGGCCTCGGGCGTTTGACGCCCGTCGAATACGAAGTAATCATGACCCCACCGGCCAGTCAGGCCGCGTGACCGAACCTGTCACCGAATCCTGCATCAGTCCCGGGGATGAGCCCGCTTGCTTCCATTGTTCACTACCTCCAATGGTG # Right flank : CGGTCCGCCGATCCCGTTACCGCCCGATCCGCGTGCTCCCCCCGCACGAGGGCGACCCCTCGGCTGGCAACACCACCGCGCCGCGTGTTGCCCGCGCCTGCGGGCGGTAGGACACACGACGACCGAGCGGCCGAGCGTTCCAAATTTTCTGGTTTAACTCCTGCAAAATCGGGTATCGCTTGCTATCCTCGCTCATGTCCCGCCGCCCAGTTCGCTCGCTCAATCAAGGTTGTCGGTGGGGTTCGTTACCGTGATCCGTGACAGGGGTGGAACGATTCGAGGGGGAATTCGGTGCTCGGTACCGCGACCTTGTCTGCGTGGGCGAAGAGTGATCGCGAGGGTGGAAGCCTCTCTCTCGTAAGGCATCTCGCTGATTCGGGTGAGGTCGCGAAGTTGGTCTGGGACCGTTGGCTGCCGGCCCACACACGCCGGCGGATCTCGGTTGGCCTCCCTGGCGGCGAAGCGGATGGACGGACGCTGCTCGTCTGGCTGGCGGCTAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 11471-14654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRB010000009.1 Nocardia farcinica strain N-7 NODE_9_length_214840_cov_41.290467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 11471 28 100.0 34 ............................ CCGGTTCGGCACCTACCTACGTGAGTGCTCGGTG 11533 28 100.0 33 ............................ CGAGAGACGGCAGCGAGCGAGACGAGACATGTA 11594 28 100.0 33 ............................ CAATGTTTCCTTATCGTCTGATCCTCACCGGAA 11655 28 100.0 33 ............................ TTGGGCAAGGGCGACTACACGGTGTTCGTCGAC 11716 28 100.0 33 ............................ CGGCAGTTCCACCTCCGCCGCCGCGCATGCAGC 11777 28 100.0 33 ............................ CAGCACGATGCCAACGGGAAGTTCCTATATTTG 11838 28 100.0 33 ............................ CGGTCGAGTTAAGCCCCGTGTCTACAGTCCTCC 11899 28 100.0 33 ............................ CGAAGTGCAATGCGAGATTGGCAAAACGTGTCA 11960 28 100.0 33 ............................ CTGAACAATCTTCTGCGCCAACGAATCAAAGGA 12021 28 100.0 33 ............................ CAATTCCTGGTCCTTGTCGGCGGTCGCGGCCCT 12082 28 100.0 33 ............................ CTACGGCAGCATCCACCGGTACATCCTCGGGGC 12143 28 100.0 33 ............................ CATCTACCTGGCCACCGCGATCGGCGCGAACAC 12204 28 100.0 33 ............................ CGGCCAGAACAAGACCAAGGTCGGTGGCGCCGT 12265 28 100.0 33 ............................ CGGGGGCTCGATGACCTGGTTGCGGCAGGTGTG 12326 28 100.0 33 ............................ CACCGTGATCAACAGATCCCGCACCTCGGCATC 12387 28 100.0 33 ............................ CCGGCGCACCGCCTAGGCGTGTGTCGGCTGGAC 12448 28 100.0 33 ............................ ATCGCGGCGTTCGCCGACCAGATGCGGCCGGTG 12509 28 100.0 33 ............................ CCGGCCGACGGCCGGGGTGTCGAGCAGTGCGGG 12570 28 100.0 33 ............................ CCGTTGACCGATTACACGATCAAGCGCGACTAC 12631 28 100.0 33 ............................ CCCGGAGGAGCCGGACATGAACGACCAGTGGAC 12692 28 100.0 33 ............................ CGATGCAGCCCTGGAACGGGACCGTCCAACCGT 12753 28 100.0 33 ............................ CGTTGGAGGGGTGGAGTCGAATCCATCTGAGAT 12814 28 100.0 32 ............................ CCCCCGCCATAGACCATTGGTACTCGCTCCAC 12874 28 100.0 33 ............................ CGGTTTTCGAGGCGATTTCACGGAGACGGACAA 12935 28 100.0 33 ............................ CCGGGCACGGTCAGGGTGCTCGAAAGTAAGCGA 12996 28 100.0 33 ............................ CACCTACCCGCAGTCGGCGGAGCTGATCCACTG 13057 28 100.0 33 ............................ TGGCTCGCGTCGTCGTACGGCCAGGCCACCGCA 13118 28 100.0 33 ............................ CCCGAGACCGCAGGCGCAGGTGGTCGACCGGGA 13179 28 100.0 33 ............................ CGCGCCGCGGTCTGGGGCACGGTACGCAAGCTG 13240 28 100.0 33 ............................ CGTGAGCGTCTGGTCGGCCACGTTGTCGGCCGG 13301 28 100.0 33 ............................ CTTCTCCACGCGGGAGAGAGCGGCGATGGTGTC 13362 28 100.0 33 ............................ GGCCCTGCTCGACCGCATCGAGCACCTGGCCGT 13423 28 100.0 33 ............................ CCGGAGGACATCATGGCCCAGTACAACGTCGAC 13484 28 100.0 33 ............................ TGTTTCCGGTACTTCCGCAGGACCGGGGGTATT 13545 28 100.0 33 ............................ CGAGATGGCCGAGGATCGCTCCACCGAAACCGA 13606 28 100.0 33 ............................ CCCACTCCTACGGACCAGCGCCCCTGTGAAGTT 13667 28 100.0 33 ............................ CCTGTTCGAGGGCCTGGACGAGACGCTGCTGCA 13728 28 100.0 33 ............................ CCGGGGTGCGGAACTTCATCCGCGACGACCAGG 13789 28 100.0 34 ............................ CGATGTCGACGCCGTGCTCGCCGCGATCGGTCAG 13851 28 100.0 33 ............................ CGCCCACGACTACCAGCGCACCTCGGTCGACGG 13912 28 100.0 33 ............................ GTCGGGGTCGGCGGTGTTGTGGCCCCACAGCAG 13973 28 100.0 33 ............................ CTGGTCGTGAGCGCCTTCTTGATAGCGCTGGGC 14034 28 100.0 33 ............................ GAGGGAAGCGGGCAGGCCGGCATCGTGCAATCG 14095 28 100.0 33 ............................ CCGGACGGCGGCCGGGGTGTCGAGCAGTGCGGG 14156 28 100.0 34 ............................ CCGTCAGGAGACCGCAGCATGACCGACCTGACCC 14218 28 100.0 33 ............................ CCCGGCAGGGTGACGCCGCTCCAGGTGCTCGAC 14279 27 96.4 33 ....................-....... CCGCCGCCGGTGCCCTACGCCGAGCTGAAGGTG 14339 28 100.0 33 ............................ CGACCGGGCGCAGGGGCGGATTGGTGGGTGTCG 14400 28 100.0 198 ............................ AAAGCTCTGTTCACCACCGACTGGCCGGACTGGCGATGCGGACAGGCGTCAGGACCAACTCGCCCGTGATCCATGATCTCTTGAAGGGCCGCCCGGCGAGACCATCAGGCGCTCAATGGTTGTGAGCGCAGAATCGGTGGATGGAGAAGGGCGGCTGGACCGCGGCGGTACAGCGCCGCCGGCCGCCCGCCATTGCGG 14626 28 71.4 0 ...G..TG.....CG.TC..A....... | G [14653] ========== ====== ====== ====== ============================ ====================================================================================================================================================================================================== ================== 50 28 99.4 36 GTGCTCCCCGCGCGTGCGGGGATGAGCC # Left flank : AGTGGGACACCGACATCGTCGAGCTGTGGGACCGCAAGGGAAACGTCGCGGGCGGAACCTCCTACAGCGACGAGGACGTCCCGTGGTAGTGCTCGTACTCAGCGCATGCCCCGCCGGCCTCCGCGGCCACCTCACCCGGTGGTTCCTCGAAATCAGCCCGGGCGTATTCGTCGGGATCGTCAGCGCGCGCGTGCGCGAACTCGCATGGCAGCGAGTCGTCGAACTCGCCAAGGACGGCCGCGCCATCATGATCCACTCCACGAAAGGAGAACAGCGCCTCGCGTTCACAGTCCACCGACACGACTGGGAACCGGTCGACTTCGACGGCCTCCACTTGATGCGCCGGCCGCACACCAGCGCCGTCAGTTCAGGAGGCGCACGGGCCGGCTGGAGCAAGGCCAGCCGGTACCACCGAGCCGCCCGGAAACGCGCGGCCGGTGGGGGTGCGGAAAGTGAATGAAAAATGGGTGATCGGCTTGGAAACGTGCAGGTCAGGAAGT # Right flank : CCCCGTCGGTGCCCGTGATCTTACGATGAAAGTTACGTTGATCCAACGGCTTTCCCCAGACGATCTCGTACACACGGCGTAGTTCCGCTACCGTGAACTCCGGCCTGCAGAAGCGGGTTGCGAGAGTGGTGTACTCGAGCTTGCTCCGAGCGCGTTCGACCGCGTCGGCGACGATTCGCCCGTGATCGAAGGCCAGTTCGGTCCGCTCGTTCAACACCCGCTCCACGGGCATCCAGGTGGCCGAATGCGCGTCCCCGCCTGCTTCGGGCGCGGGGAGGTCTGGCACCAGTGCCAGGTAGCACACCGTTACGACGCGCCGTCGCGGATCGCGGTTCGGTGAGCCGTAGGTCTTCAGCTGTTCCAAATGCGCGCGATCGAGGTCTAATCCGGTCTCCTCGGCCAGTTCTCGTTCTGCGGCGGCGTCCAGGTCCTCGCGGTCGTTGTCGAGGAAGCCTCCCGGTAGGGCGAGGAAGCCCTGCCATGGTGGGATCCCCCGTTCC # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.30, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGTGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 131908-134192 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADLRB010000009.1 Nocardia farcinica strain N-7 NODE_9_length_214840_cov_41.290467, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 131908 28 100.0 33 ............................ CGGGGGCCCGGAGTCCCGCAAGGTCGCGGCCGG 131969 28 100.0 33 ............................ CCGGTCGATTTCCTCGCCGGTCTCGGCGTGGAC 132030 28 100.0 33 ............................ CGGCCTATCCCGATCTCTCTGACCATGGACACG 132091 28 100.0 33 ............................ CGGTCCCTCCGGGTCGAGGATGACGCGCATGTG 132152 28 100.0 33 ............................ CCCGCAGCCCGAGCACGTCGAGGACCTGCTCGT 132213 28 100.0 33 ............................ CACCTGAGGCCAGAGTTCCCGCTCCAGCCTCAA 132274 28 100.0 33 ............................ CACGCATTCATGGGCGGTGCCGACAGGAGTCTG 132335 28 100.0 33 ............................ CGAGAGACCGGCAAGCGAGCGAGACGAGACATG 132396 28 100.0 33 ............................ CGCGCACACGGCAGCATAACCGCAGGTCAGAGC 132457 28 100.0 33 ............................ CTGCGGCTGATCCTGCCACAGTTGCCTCCCAAT 132518 28 100.0 33 ............................ CCGCTTCAAGCGCAGGAATCGGGGAGTCAGCGG 132579 28 100.0 33 ............................ CACGAACGTACGCCGCTTCTGTCCACAGAGAAG 132640 28 100.0 33 ............................ GCCGAGTTCGCGGGCGCGCGGCCGGGCCGCGAA 132701 28 100.0 33 ............................ CTGGCCGCCGTCTGCGGCTGGCATCCGGCGAAG 132762 28 100.0 33 ............................ CTTTCCGGTCCCAGGTGGCTACACGGCAACGGC 132823 28 100.0 33 ............................ CTGCTGCTCGCGATCGGAGGATGGATGGCGCTG 132884 28 100.0 33 ............................ CTCCGAACCCGCTGCCGAGCCCGGTGTCTCGGT 132945 28 100.0 33 ............................ CGTCATCGGTCCGTTCTCATCCCGGGAAGCAGT 133006 28 100.0 33 ............................ CAGGAAGTACAGACGGCGTGAGTTCGCGCGCCT 133067 28 100.0 33 ............................ CACCTGGCACTGTTCGCTGGCGCTGCACCCGGA 133128 28 100.0 33 ............................ CGGCCCGTTCAAGTACTGCTCGGTGCAGCAGGG 133189 28 100.0 33 ............................ CGCGCCGCAAAGTGCCGGTGTGGTCCAAGATGC 133250 28 100.0 33 ............................ CTGTACCTAGATCCCGTGCCCGTGGTGGCCGTC 133311 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 133372 28 100.0 33 ............................ CTGTACCTAGATCCCGTGCCCGTGGTGGCCGTC 133433 28 100.0 33 ............................ CACCGCCGACTGGGGCTGCATCGTGTGCGGGTC 133494 28 100.0 33 ............................ CCCGTGTCGGCTCACCCCGCACTTCGCGACCTC 133555 28 100.0 33 ............................ CGACAGCGTTTCCCGCCACGCCAGCAGCCGCTT 133616 28 96.4 33 T........................... TCGGGCGTGGCTCACCGACGCTGTGACCCCCGG 133677 28 100.0 33 ............................ CTTGGAGGCACCCGAGCGGCGGTCGACCTGCTC 133738 28 100.0 33 ............................ CCCGAGCGTGACACTGGTCGAATGCAACGCCGT 133799 28 100.0 33 ............................ CGGCAGCAAGATCGCCGACCACGCCTGCGCCGC 133860 28 100.0 33 ............................ CCGCTGAAGCAGCACTGGCCACCAGCACATCGG 133921 28 100.0 33 ............................ TGGGACTTCCAGCAAGAACTCAACTGTGACGCC 133982 28 100.0 33 ............................ GTACAGGAGGTGGTAGCGCTTATCACCAACGCG 134043 28 100.0 33 ............................ CGGGGTGTCGGTCAGCAAGATCGCCGAAGCCGC 134104 28 100.0 33 ............................ CCAGGCTTGGGAGAACAGCGCGCCGCCGAGCGG 134165 28 92.9 0 ..............C...........T. | ========== ====== ====== ====== ============================ ================================= ================== 38 28 99.7 33 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CGCGGGTGACGATCGAGGTCGACGAGGCGGCGCTGGCAATGGTCGGCGCGCTGCTCGGCACCGCGGGCCGAACGGAGGAGACGGTGAACGCGGCGCTGCACGAGGTGCTCGCGCAGCGCAAGCGCATGGCCGTGCTCGAGCGGATGATGGTGCGGGCGGGGGAGCGGGTGGTGCCGGCCGATCCGTGGCGGAAAACGCCCGCTTGGCCGTAGCGGTCGACTGCAAGCGAGGTGCTGAGTGTGTCCCGGGGGGTGCATGCGGTACACGTCCAGGGTCGCGAGCGGAAACGAGGCTACGAGCTTCAACGGGCTCGTTGTGGGGCTGTTGGAGCTCGCGGGGCCTCCCTTCCGGTGTTGTAGGCGTAGGTTGTGGGAACCTGTGCGGAGGCTCACGCGAGACAACGGAGGTGTGATGTATCAGGAGGTGGATTGCGGCGCGTGAGTTGGGTGAAAGTGAATGAAAACTGGGGTAGTGGGCTGAGAACATGCAGGTCAGGAAGT # Right flank : CCGACGACAACAACCTATGGGTGCTGTGCGACAGGTGCTCCCGCACGGGGATAAGCCCGCGACTTGGTCGCGTGCGGGCTGGGCGAGGTCGTACCCCCGCGCACGCGGAGCCGCCTTCTTCGGTCGGGGCAGCAAGCAACCGCACCTACCGCCCGCTGGGCTCCGGTCGAATCCGCCGGTCCCACCAGCGTCCCGGTCCTCGACCCTCGGGTGCGCGCGCCTGGTGTCCGAAAACGGCTGGGGTGGCCTGGATCACCTCGCCGGGGTCGTTGTGCGGTCGGTGGGGGCTCGCCGTGAAAGTTCCCGGCGAAAGAGGTATCCTGCCGGAGGACGCATTCGCGTTCGGTCAGAATTGTGTTCGAACACGTCGTGTTCGGGCATATTGGATTCGAGCACACGCTGTGTTCGAGCAATGTGAAGGTTCCCCGGAACGAAACGCGGGGACGAACGGCGCGCGCGATCGGCAGGATCGCCGCCTAGGACGAGGAGGTGGGTCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //