Array 1 49823-49488 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803624.1 Aerococcus sp. HMSC075D05 Scaffold260, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 49822 30 100.0 31 .............................. TGTAGGTGGAGAGAAAATGAGCAAAATTGTA 49761 30 100.0 31 .............................. ACGCTACTCTAGTCTTAAAGGTGGACGACAT 49700 30 100.0 31 .............................. TGTTGGAAGGTATATTTAGACAACTAATAAA 49639 30 96.7 31 ............................C. ACCGCGTTATACGTGCTGCTGCCTTCTGATT 49578 30 100.0 31 .............................. TGATAAGCACAAACCCATTACAAGATTCATT 49517 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== =============================== ================== 6 30 98.9 31 CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Left flank : GCAAATTGCTATGTGCTTTCAAGCTTACCAAAGTGAGAACTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGAAATCTGATCAAATTACAAATTCACCGGATTATTGAGTCAGAGTATGATTTTGGCCGGCGTGACAATGCCTTATTATGTCCGCACTGTCAGGAACAGCTGGGCTCTTTGAGTGAACATAAGGGCCGGCCTTGTTATTTCTTGCACCGAGGACGAGTACAGACCAAACGCTTGCAGCATTATAAAAGCTAGCCAAGGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGGAATTGGGTAGGTTAGGAATGACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : AGCAAGGCGAATTAGCTTTTAACGAAAAAGGCTTTTTCCCGCATTTATTTGGAAATTAATAATATTTGATTTAATAGAGGCTTTAAAGAAGTCTCTTTTTTATTAGCTTTGATCAATATTTCTTTTGAAATCATCAGCTCGATTTATCCAAGCCTTGGGGTGGACATGCTATAATATAAAAGTAAAATAACTTTATCATCCTTTCCTGTGATAGGAGGATTTAAAGCAAGTAGGTATCATTGTAAACTTTAGGAGGTAGTAGCTTATGGCTGAATCTACTCGGAGTGTTTTCATATCTGGGTCGAGAACGCAAAACCAATTATCCCAAGAAGTACTAGATTCCATTGACGCAATTATTGACCAAGGCATAAAGATTAACCTAGGGGATTCCAACAAGGGGGTCGATAAGGAAGTGGCTGACTTGCTTCGACTTGAAAATTATCAGGCGGTTGAAATCTTCACCATTAATCAAAAGCCACGGATTGCCATTGAAAAGGACT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCAGACGCGGGGGTGATCCTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 26841-27471 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV803642.1 Aerococcus sp. HMSC075D05 Scaffold529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 26841 32 96.9 34 ..........T..................... AATAACAACTGGTTTCTTTCTGTATTTCATTAAC 26907 32 96.9 38 ..........T..................... ATAATATGGGCTTAGATTTTAAAGAAGGTAGTGTGAGT 26977 32 96.9 35 ..........T..................... CATTTTTCTGATCATGTCGTAGATCTCTTGTTTGC 27044 32 96.9 34 ..........T..................... CGCAATATGCGAATGGTATTGGGTTTTCTACCGG 27110 32 100.0 34 ................................ AAGTGGACTAACCGCCATCTTTCTTTAGGGCCGT 27176 32 100.0 35 ................................ AGCTCCAATTTGTCGCCATGGACTAAATTGGCCGG 27243 32 100.0 34 ................................ AGCTCCAATTTGTCGCCATGGACTAAATTGGCCG 27309 32 100.0 33 ................................ CCTCCTACTTAAACTTCTGATCATCCATATATC 27374 32 100.0 34 ................................ TAAGAATTGTTGAAACCATGAGTGAAATTCGCTT 27440 32 81.2 0 .......A..T.A...A...AC.......... | ========== ====== ====== ====== ================================ ====================================== ================== 10 32 96.9 35 GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Left flank : CGATTCGTTTCTATAATCTGGGTAAGAATTGGGATCATCGAGTACAAACCTTAGGACGGGACGATACCTATCACCCTGAAAAGGATGTCTTACTCTTATAACGAACCCCAAGCACACAGAATTGTATCGGTAGCTTCGTTTGTATTTTGGACTCAAAAATACAATATAAGTGATTATTTTGCTCTTTTTATAACACTTATATTATGAAAATATAGTGAAAACTTGTAAAAAGAGCTGTCGCAGGCTTCGCGCCTGCGTGGATTGAAATCTTTTGGTACCTCTGCGATCGCCTCATCATGGACGTCGCAGGCTTCGCGCCTGCGTGGATTGAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGCAGGCTTCGCGCCTGCGTGGATTGAAATAACGCTGATCCGTAGGTTAACCCCTCGTCTCTAC # Right flank : TTGTAATTGCTGATAGTATCAACATTAGTAACGAGGGTTCAGACTTTTTGTCTGTATGGATTGAATTATCAGTTAACGAAAAAGCGATACGTTTTTCTTGTCGCAATTTATACACTTATGTAGGTAGAAATTAATATGCGGCTAAGTATTACAAATATGGTCCAAAGTTGTAGGCTTTCTTTCAGCAAAGATTGACTATTTATACCAAGCAATCAGCCCTTGCCAGCTCCTCCATCAGCGAGCTCAACAAGGGCTTTTTCTATTACATCGACTCATAAAAGCACTAAAAAAATTAACCCAATCCCAAAAATAAATCACAGCCCCACTAAAACCGATCATTCTTGATCCTTTTTCCTAAGTTGACAGTAGTCCTTGGACAGGCTAAACTATCAGTAAATCAAAACATTATTAAGGAGATTACATCATGACTTTAGTATTCATTTCTTGGCAAGGCTGGCGTAGAGTAAAGTGAGATAACTAAGAACGGTTAGACTCGCTTT # Questionable array : NO Score: 9.03 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGGCTACGCGCCTGCGTGGATTGAAAT # Alternate repeat : GTCGCAGGCTTCGCGCCTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //