Array 1 6760-5473 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHZ010000001.1 Listeria welshimeri strain FSL W9-1195 NODE_1_length_344893_cov_128.504107, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6759 36 100.0 30 .................................... TGGTGGTAAGGGAATATTTCAAGTTTCAAA 6693 36 100.0 30 .................................... AAAGTGACTAGTGTATCAGTATCTACTTCT 6627 36 100.0 30 .................................... TATTTTTTTGGTTTTACAACCTGTTTTTTT 6561 36 100.0 30 .................................... TAATGTACCTGGTATTAAGGCTTTGGCTTC 6495 36 100.0 30 .................................... TTAGATACTGGGACAGAAGCAAACCAACTT 6429 36 100.0 30 .................................... ATTTGAAAATTTCACATATCTGGCAACAAG 6363 36 100.0 30 .................................... TAACATTTTATTGCAAGATTGGTTATCAAT 6297 36 100.0 30 .................................... CTGGAAACAGGATGTCCGGACGCGTTCTTG 6231 36 97.2 30 A................................... AGGATGCCAAGTTCGAAGTATTTATGCGTC 6165 36 100.0 30 .................................... ATACTCAAGAACCTGAAAATTATAAGTTAA 6099 36 100.0 30 .................................... AAGGTTCATTTCCGTATAACATTCCTCTTC 6033 36 100.0 30 .................................... CAATTTCCACAAACCCGACACATTTATGTC 5967 36 100.0 30 .................................... TTACAGAAATAGCTTCAAAAGAAGATGAAG 5901 36 100.0 30 .................................... TTAAGAGGTATTTTTCATGGAAGCAATTCA 5835 36 100.0 30 .................................... AGTGGAGGCTCTTAAAACACTTGAACTGTT 5769 36 100.0 30 .................................... TTCGCTCACCACCTCAATATCTTTAATTTC 5703 36 100.0 30 .................................... TTTTAGGGGCACTATTTTAGAACCTTGTTG 5637 36 100.0 30 .................................... CAAGTGATTCATTAGAAGACGCTAGACGCA 5571 36 97.2 27 ..........................T......... GAATATTCTCCCCCATCGCTAACAGGG 5508 36 72.2 0 ............CA.....C.....ATC.A..C.CA | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 98.3 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAATGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAATACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTTCGCAAGTTACTTTAGATTCTGATTATTTTTTACACGTAGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : AAGATAAAATTCATCGCAATTACAAAACATGGTTAAATTTAAAAAGGAGTTAGGTATCTATATGACACAGTATCACTATCTTACTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTTCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACCCAGCTTGTAAATTTCAACTTGCTGTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATTGGCAAAAAAATTGTTACGAGACTTAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAGGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAGCTATTAATAATTAGAAATGAAAACCGATATAACTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 220488-220894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHZ010000005.1 Listeria welshimeri strain FSL W9-1195 NODE_5_length_234828_cov_115.392220, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 220488 29 100.0 34 ............................. TGTTATACATTGTATTTTCCTCCCGTTCCTTTAC 220551 29 100.0 36 ............................. TCTTCAGTGATATGTGCATACGTATTTAATGTAACT 220616 29 100.0 36 ............................. TCCGCTGATATGATTGTTTTGCTAGCAGATGCTTTA 220681 29 93.1 24 ....................G..T..... GGTACCTCAATACCTTTCTTCAAA Deletion [220734] 220734 29 100.0 36 ............................. GTACGAGCGATTAGCTGTTGAATCACAACAGACGCA 220799 29 96.6 37 ................T............ TAGAATTTAAATAGTTCATCTACGTTAAAGTTTGAAG 220865 29 86.2 0 .............C..A.C.........G | T [220891] ========== ====== ====== ====== ============================= ===================================== ================== 7 29 96.6 34 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : GTACTACATAAAATGTCACTGTGCCGTCTTTTTCTTTCTCTTTGCTGTCTGCTTTGCTCGTAGAAGTATCATTACCACAACCCGCAATCAAAAGTAATGCACAAAACACCATCATTAATTTCCAAATATTTTTCTTCATCTTTTTCTCCTTTTTTATGTTTTTTAGCAAAATAAAAACCCAGATAAATCGAAAAAACAGCCCCAAAAGCCAATTTTCGTTTTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAATAAGGATATTTGTTTATAAGATGATTTTAGCATGAATAGAAAGCGTTTACAAGTTTGTGTGTTTTCTGTCGATGTATGGTAGCGTAAAAAGTACTAGAGACCGACAGATTTACGGGATGCATTGGGAGAGAATGAGAGTGGGTGGTGAATAGTGGTTTTAGGAAGTTGAAAAGCCGGTTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAATAGGGATGAAAATGGACGG # Right flank : GCCTTTCCATCATGCTAGTAAAGCTGCAGAAATAATTATTTCGGATTATAAATTCATTCAGCAACTAAAACATAGATAGTAGCACTATCATAAATTTCCAGTCAATAAAAAATTAAAATCAAATCCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAATAAGTGAAAAATTTCAATTAATAATATGGCGAATGCTAAACAAAACACTAGTATTTTCAGTGGTTTGTTTTCGCTAGCATTCACTCTTTGTTTGTGTTAAATTAAACACAAACAAGAGATTGGGGATGACAAAATGAGATTAAAAATAAATTGTGATTTCGACTCCAACATAATACCGAAAGACTATAGAGGTAAAATAGTCAGTTTATTCAAAATAGGAATTGAAAAATCTAGTCCAGAACGATTCAAAGATTTATTTGGCAGTAACAAGCGGAAAAAATACACTTTTTCGATATACCTGCCTGAACCTAAAAATAATAAAAATGAAATTCACCTTGAA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 229432-230876 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTHZ010000005.1 Listeria welshimeri strain FSL W9-1195 NODE_5_length_234828_cov_115.392220, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 229432 29 100.0 35 ............................. CTGCTCACATAATGATAAAAGATGTACTCACCTTT 229496 29 100.0 36 ............................. ATAAACTCCGATTTTCCACACTCAAATGTGTTCACC 229561 29 100.0 36 ............................. GAGACTTACGTCCGGACCGTTACAAGAACAACCGTC 229626 29 100.0 35 ............................. ACTGGAAAAGGTTCCGAAAAAGAACGAGAAGCACT 229690 29 100.0 36 ............................. ACTCTAAACAGTTCCGTGCCAAGCTGAAACTCTTGA 229755 29 100.0 35 ............................. TTTAATATCAATCCACCGATTCCTACAACAAGCGC 229819 29 96.6 34 ..........................G.. TGCCACACAAACGAACAACTAAAAAAGGAACGCA 229882 29 100.0 36 ............................. AAAAGAAGCTCTGTTACATCATCTTTTTGGTCAATT 229947 29 100.0 35 ............................. TTTCTTGTTACGAACAACTCTATCAAACGTTTTAG 230011 29 100.0 36 ............................. AAATATAAGCTTTCAGCTAACAAAGTGGAAATGCAA 230076 29 100.0 36 ............................. AGGAGGAAAACACGATATAGCACCTACGCTATCATC 230141 29 100.0 37 ............................. TCGTTTCCCCCGCCATTTGTCGCATAAATTTTACCTT 230207 29 100.0 35 ............................. TTTTAGCAACACTAGTTATTAAATCATTATGTTGT 230271 29 100.0 35 ............................. ATGGGAACAATGTATGATTTAATTCTGGATCATGA 230335 29 100.0 35 ............................. TGTGCCAAGCGCCAACGCTTAGATTTTTTAACTTC 230399 29 100.0 36 ............................. AAAGAAAAATTGCCACATCATTGACCTGATTGCCGA 230464 29 100.0 36 ............................. TTCGTTACATAACTATAGTATTGCCGATTTAGAAAA 230529 29 96.6 34 A............................ TAATATTTAATATAGTTATATTGTACGTTTTTTC 230592 29 100.0 34 ............................. TTGGATGAAGTATTTATTTTCTTCTGCTAACACA 230655 29 100.0 36 ............................. CGAGTTGTAATTTGGGAAAATGTTAAAGGCGTACTG 230720 29 100.0 35 ............................. GTGTCTGAATAGGCTGGGAAGGTGCAGACAGAAAC 230784 29 100.0 35 ............................. TAAGCAAATCTTTTGCTGTAATAGTGCCATCAGTG 230848 29 89.7 0 ................A......C....C | ========== ====== ====== ====== ============================= ===================================== ================== 23 29 99.3 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTTTGGAGAAATGTATTTAAGATTTTTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAACTTCTTTTGATGTTCTCAATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATTATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : CTCCTTCTCTCAACAATACACCCCCAAAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTAACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCTGCCACAATCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTTGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATTACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTTATGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //