Array 1 11382-10878 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDB010000590.1 Parabacteroides distasonis strain D33t1_170424_F12 NODE_1858_length_11442_cov_36.1415, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 11381 33 97.0 35 ................................T AAGCTCGTTTACTACCGTTCTCGCCGTCCACAGGT 11313 33 97.0 33 ................................C ATGCGGCGTATGCGGTATTTGCGGGAATATGCG 11247 33 97.0 36 ................................C AGCTCGAAGCCGGCGTAGGTGCGGAATACGTTTTGC 11178 33 100.0 34 ................................. AGCAGATCAGCACGATAATAAGGTGCGTGAAAAG 11111 33 100.0 37 ................................. ATGTCTGTGTTCAAGCAGTGAAACAGTTGCCAGAAGG 11041 33 97.0 33 ................................A GGATCTCCTCGTTGCCGCCGAAGGTGACGGTAT 10975 33 97.0 32 ................................T TCACTGGCACCGTTCTCTATCGCATTCCGATA 10910 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ===================================== ================== 8 33 97.8 34 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACG # Left flank : CCCGTGTGGGTGCGTGGATTGAAACATAAAGGATATGAGGAAGGCAAATGGGTACTGAAA # Right flank : TTTGTAAAGCGCAAGCTTTTTCATAAAAGATATACTTACGTGATGAAGTATATCTTCTATGGGACTTGAAGTGTTCTTCTGCGACGAAGGGATTAGTACTTCGTAAAAATAACTTTTTAAAGTCACTGACACTGACATATAATTTCGCTTAGTTATTTCTGCAAAAATCATTCATATGTAAACAAGTTTCGTATATTCGCGACCTTATAATAGTTTAAATATGGCAGAGGAACTACGGATTAAAAATGGTGATAAACAGGAAATGTATGAGACGTTGCTCCCGCAAATCGCCTCATTGGTAGGTAACGAGACCGACCTAATCGCTAACATGGCGAACGTCGCCGCAGCACTCAAGCAAACTTTCGGTTTCTTTTGGGTGGGTTTCTACCGGGTCATAGACAATCAGTTGGTATTAGCGCCTTTTCAAGGCCCTATCGCCTGTACACGAATCAAATACGGAAAAGGGGTATGCGGCACGGCTTGGAAGGAGACCCGTACGA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.60,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8800-9364 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDB010000373.1 Parabacteroides distasonis strain D33t1_170424_F12 NODE_1135_length_9415_cov_32.2294, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 8800 33 100.0 32 ................................. ATACAAGAAACAGGTCTTTTCAATTCATCATA 8865 33 100.0 33 ................................. TTTAATATTGTCAATGCAAATCAGACGATCAAT 8931 33 97.0 34 ................................C CTTTAGAATCTTTACCAACAACGATTCTCAATGG 8998 33 97.0 32 ................................C TACATTTACATCTCTTCCTGAATCGTTTACAC 9063 33 100.0 34 ................................. ATAGGCTTTCGGTAAATGGCGGCAGTTGTATTGG 9130 33 100.0 36 ................................. AAGCTTCCTTGATCAACTCGTTGTACTTGGTCTCAG 9199 33 100.0 33 ................................. TAACAACATTCCTAAAACAGAAGCGAGTTATCG 9265 33 100.0 34 ................................. CATCAAGAAATTTAAATCAACAACATATGATAAA 9332 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 9 33 99.3 34 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACA # Left flank : TGATAATTATCCGGTATTTCTAATAAAATGATTTACGATTATGCATATTCTTGTAACTTATGATGTGGATACTACGAGCAAAGAAGGAGCTCGCCGCTTACGACATGTGGCTAAGGCTTGCATAGATTATGGCCAAAGGGTACAGAATTCTGTCTTTGAGTGTGAGGTGACAGAAGCACAATATTGTCTCTTGATTGAACGAATCAAGCGTATTATTGATATGTCTCTTGATAGCGTTAGATTTTATATTCTCAATAAAAACGAGAATAAAAGGGTAAAAGTGATAGGTGTTGAAACTGCTTACAAAGTTAATAATGCTCTTATCATATAATTTATGCGAATGTGGAGTATTACGAAAAAAGTAGTATTTTCGCACCCCTTAATAATTAGCAGATTAACCCGTCTTTAAGGCGATTGCAGCCATTAAGCTGAAATAAAAATGAGAATTCGCATATTAATAGGTCTAATTTATTGACTTATAATATGTAACTTTGCACACT # Right flank : TAAAGGATATGAGGAAGGCAAATGGGTACTGAAAGGTCGCACCCCGTGTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 13630-14522 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPDB010000023.1 Parabacteroides distasonis strain D33t1_170424_F12 NODE_50_length_19825_cov_34.6861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 13630 47 91.5 30 A......C.......................GA.............. TTCTCTGCGTTTTGGTTCAATGCGATTGCA 13707 47 100.0 30 ............................................... TTTGTGCGCTACCAAAAGGCCCTGTCCCTA 13784 47 100.0 30 ............................................... ATCCGGAATAAGCACGGCACAGGAAGTTTG 13861 47 100.0 30 ............................................... ACTCCTTCACTGTATAAGTAATCTTCTTCG 13938 47 100.0 30 ............................................... TAAGATCGAAATATCGAAATTATTGTCACT 14015 47 100.0 29 ............................................... TGCCACTTGAGCATTTAAAACCTGCAGGT 14091 47 100.0 30 ............................................... CCCCTCATCTTTTAATATTAATTTCTTCCC 14168 47 100.0 30 ............................................... GACAAGACATGTATAAAGGTAAGTCAAAAA 14245 47 100.0 30 ............................................... TCCTTGTCGGACAATTCTTGCTTTTCTCGC 14322 47 100.0 30 ............................................... AGCATTTTCGCCTATCGAAAATTATCATAT 14399 47 100.0 30 ............................................... ACTTGATAGTTTTTACCCCATATTCTTGGA 14476 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 12 47 99.3 30 GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Left flank : TCTAAACGCTTGGAGAATCGATTATTTCGAGGCAAGGTACGACTTGCTTCCAAATTCGAAAATATTTTTTCACAATAATCTATTGAACAACGCATTACAAATTTTCACTGATTTATTCTAGCGAAAGATTTCGTCTTCTGTCAACCTCAGTCGGACAAACAAGCGACTTTTTATCTGAAAACAATAAGCTTTTCATCCGAAAACAATCGGATTTCCGGTCGGAAACAATAAGGATCGCAGTCGAAAACAGCATACAACGCCGTTATAAACACCTTACTATTGGATCATAATCCCTCTACAAAGCCTATTCATACACTAAAAAATGGCGAAATACGCTGTTTCCGCCTTCCTTTTCTCTCTATTTTCGCATTTCCATAAAAAGCCTTTATCAGCTAAAAGTCTCCATTTTGAGCAAAATGACAGAAAAAGAGATATTTTGATGACATAAAAGAGAATGGCTTACTTTTTGGTGTAGCTGCCCCAATATTTTGCAATATTTT # Right flank : CATATTATCTATTAAAAACTATTAATCAATGGATTACAAAGCACATCAGAATAAAAAAAACAGATATTGTTTCCATTAAAAATCCCGCTTGACAGCGGGATTTTTCTTTTAGAACAACTCCAATTGCTGTCCAGGAGTATTCACTTCCACCGTTTTCTTTCCATAAAAAAGTTCAATATTCCCAAACTGCTTATCCGTAATACACATGATTCCGACATTCCCATGCTCCGGAAGAAAAGATTTAACTCTTTTTACATGTACGGCCGCATTCTCGCTACTAGCACAATGGCGGACATAAATAGAAAACTGAAACATCGTAAATCCATCTCTTTGTAGATTTTTCCTGAAATCCACATACGCCTTTTTCTCCTTCTTCGTCTCGGTAGGCAAATCAAACAACACAAGTACCCACATAACACGATATTCGCTAAACCGATCCATATTACATTTCCGGATAGGAGATTCTACGCAATTCGCCACTAAAGCACTTATACAGAGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.83%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.10,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //