Array 1 144969-146647 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEM010000010.1 Pseudoalteromonas luteoviolacea strain MMG001 assembly_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 144969 29 100.0 32 ............................. TATGTTATGAGGTTTGTGTGATATGGCTACGT 145030 29 100.0 32 ............................. TTATTTGTCAGACTGCAATGTTTTAATAACTC 145091 29 100.0 32 ............................. AGTGGACTCGTCAGTATTATGATACACGCAGT 145152 29 100.0 32 ............................. TTTCAATAATTGCGTCCAAATCCGCATCGGTA 145213 29 100.0 32 ............................. ATTTTCCAGTTTCAGTTACTGAGCCAGAGGAG 145274 29 100.0 32 ............................. CAAAACCCCAAACGTGTTGGCGGCCAAATGCT 145335 29 100.0 32 ............................. CTCAAGGCGTAATTATACACAACGAGAGCAAA 145396 29 100.0 32 ............................. CTCAGACGAAATTGTGATGCCCAATATTGAAC 145457 29 100.0 32 ............................. CAGTATGAACCATTCTGAAAACCACATAAAAA 145518 29 100.0 33 ............................. CGAAATAAGAGTAAAAAAAATAAATAAAGTCAG 145580 29 100.0 32 ............................. CATTATTGCGAGTCAGTTTGGGATGTAGACCC 145641 29 100.0 32 ............................. TTTTTCGCCATTAACATCAGAAGGCCCAGACT 145702 29 96.6 33 ............................T CTTGAACTTCATCAATCAAAATGAAAGCGCCGC 145764 29 100.0 32 ............................. AACATGTTTGCAGTTATTAGTGTTGGATCTAA 145825 29 100.0 32 ............................. GGTTGCGTCTTCCTTATCCTGATGTTGATATC 145886 29 100.0 33 ............................. CTTTTTCTTTGCATCAGATTGAAGATGAACAAC 145948 29 100.0 32 ............................. CGTTTGTTATCGGTGATCACTTGGAGTCATTT 146009 29 100.0 32 ............................. ATTTAAGCTAGTAAAATCTACGTCCAATTTCA 146070 29 100.0 32 ............................. TTGTTTAGTAGTCCAGTTTTCATTGTCTTCAT 146131 29 100.0 32 ............................. GTTCGTATCGATGCAGGTGTTGCACCAACAAG 146192 29 100.0 32 ............................. GCACTCAAATACTTGTTGCATTACCAGCTGTC 146253 29 100.0 32 ............................. CGTTTCTAGCAGGTGTAGGTAATGCACAGAAA 146314 29 100.0 32 ............................. ACAATATGGATTTAGCTGCATTACACCGCGAA 146375 29 100.0 32 ............................. GCGAACTCAATTTGAACATCATCGGCGTGCGT 146436 29 100.0 32 ............................. CATTAACTGATGCAACAACTTCATTGAAGTAA 146497 29 96.6 32 ...........................T. GGATCTGTTTATCAATGTGCCAAATGAGTGAG 146558 29 96.6 32 .............A............... TGCTTCGTCTCAAAGATGCGCACTTAGAGTTT 146619 29 93.1 0 ........T....T............... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.4 32 GTGTTCCCCGTATGCACGGGGCTAAACCG # Left flank : CAAGGAGAAATCATGAAAAAACTATTACTTACAGCGGTGAGCTGTTTAGCAATGAGTGCTGCAGTTATTGCCGCAGATAAGCAATCGACTACTGCTAATCAAACGTTAACGGTTGATGGTGTGACAGCAGCTACTTACCCAGCTCAGCCAACCATTTTAGACCAACTAACCCCATCAAATGCGTGTGAAGCGCGCTGCCAAAGTCACTACGAGGCGTGCGTGAAGTGGGCGCCACCTTGGACAAACTGTAATGATTTTATTAGACGTTGTATGAACAACTGCTCTAGATAAATCCATCTATATAAAAAATGGGAAATATAAAAGGCCAGTAAAATGGCCTTTTTTGTGTCTGATAGCTATTTTTGAGGCAATTTGGGTTTTTATGAGTGGAAAAGAGAGGCAGGTATTTACTGGGTTGGTAAGATAGGTTTGTTCCCAATATTTTTGGTAGATTTTAAGAGTTCAAATTTACTTATATAAATCAATAGTATATTTTTAGA # Right flank : GTCAGTGATCGTCTCGCCATTCTGAATTGCAGCGTGCTCCCCGTACACATATAAAATGTGTCATTCTGAGCTCGTCTCAGAAACCATTCTATTGATTAATAGAAAGGATAATTCAGGCTAGTCTGTAATAAAATATATGAGCAATTGAACACAAAAACAATGTAAACAGTGCCGCATTTTGTCGCGGATCAATGACTTTCTCACCTTGTTTTGATACATTTTGTTCACGTTAATTTTACTAAAAGTGATTTATGCAGGCTAAGGAAGAGCAATATTTTAGATATATTGAGGCGGTGTTATTTTGGCAAGGAGAGATCCAAACAGGCACTTTTCAAGATAAGTTCAAACTATCAAGACCCAGCGCTCGGCGTTACTTAACAGACTTTATCGCACGCTATCAAATTGACGCGCATTATAACGAGTCTGAAAAAGCCTATGTATTGGCAACCCCCTTTACACCAAATTATATTTCCCAGGACTTTACCGAGTATGCCAGTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 156815-159899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGJEM010000010.1 Pseudoalteromonas luteoviolacea strain MMG001 assembly_contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 156815 29 96.6 32 ..G.......................... CAGCTTCACTATTTAAAACGCCCCACTCCTGA 156876 29 96.6 32 ..G.......................... CCACTATCAAACAATCCTGCACCACAAAAATA 156937 29 96.6 32 ..G.......................... CTCATATTCGTCCGTCATAATCCTTCTCCTCG 156998 29 96.6 32 ..G.......................... TGCTAAGCACTCGTTTTAGGGTGTTTATTGAT 157059 29 96.6 32 ..G.......................... CCAATGTATTACGATCATACCACAGTTGTAAC 157120 29 96.6 32 ..G.......................... GGTTATGAGTGCATACAATTCACCCAAGATGA 157181 29 96.6 32 ..G.......................... TTTAGTTGCGATGAATAGAGCACCTTTCTACT 157242 29 96.6 32 ..G.......................... CCAACAAATGCACCACCCTGACGATTTTGGTT 157303 29 96.6 32 ..G.......................... GTTTAGCTGTAGTGGTGATTGGTAGAACAGCG 157364 29 96.6 33 ..G.......................... ATGATGACGATATTGCCCAATACACTAAAACAC 157426 29 96.6 32 ..G.......................... ATGATTGCTGAGCCATTACCTGCATTGTTTGT 157487 29 96.6 32 ..G.......................... GATTACCACCCCAGTGGGCCAAGATACACGGC 157548 29 96.6 32 ..G.......................... TACGTAACAGCGGTTTGATTGCTTTATCTAGC 157609 29 96.6 33 ..G.......................... AAAATATAAGATTTATCAAAAATAACGTTGTAA 157671 29 96.6 32 ..G.......................... TAGGTGCGTCTATACGACGAGCCTGAAGTTTA 157732 29 96.6 32 ..G.......................... ACTCAGCAGTTAATGTGTTTTGAGTTAGACGT 157793 29 96.6 32 ..G.......................... CCGATTGTAAAAAAAGGATTTTTATATGATGA 157854 29 100.0 32 ............................. CTGATCAACTTGAGGCATGAGTTGTTTAATCA 157915 29 100.0 32 ............................. TTACTAAAAAACATAATTACCCCCCCTGTCTA 157976 29 100.0 32 ............................. TGGACAACAATGGCGCAATTAGAACCTATATC 158037 29 100.0 32 ............................. GCTTAGAGCATGTGCGTGAACGCGGCCTTGTT 158098 29 100.0 32 ............................. ACTCTTTAAACGTAAAGGATTATCAACATACT 158159 29 100.0 32 ............................. CGTTTACAATCAATTTTTTGCTAAAACACCAC 158220 29 100.0 33 ............................. CGCTTAGCTCTCTAAAACGTTCATCAGACACAC 158282 29 100.0 32 ............................. GATTTAATATGAATATACATATGGTTTTACAA 158343 29 100.0 32 ............................. GCATTCTCTAAAATGAATTTTCAAATCAGAAT 158404 29 100.0 32 ............................. GAGTAATTTAGATGCGTGGACTATCAGAATTA 158465 29 100.0 32 ............................. GGTAGACCGTTTATTGTTAGCTTGTTCCACAT 158526 29 100.0 32 ............................. AACTTGCGCCGGAATATGATTTTGATATGAGT 158587 29 100.0 32 ............................. CAAACTGGCAACCAGTTTTTCGTAGAATGACC 158648 29 96.6 32 ............................A TTCCAATGATTCTTCATAGCTTTTTTGAGTTC 158709 29 100.0 32 ............................. CTGTAGCACAAAATGAGGCCTACAAATCGTCT 158770 29 100.0 32 ............................. GTGTAACAATGCGAGTGACGTGCCCACACTGC 158831 29 100.0 32 ............................. AAACCGTTATTGATGTGCGCGTAGGATACGAT 158892 29 100.0 32 ............................. AGGTTACCCTTAGATATTTAGAGCATCATCAA 158953 29 96.6 32 ............................T TTTTATTTAACTATTTTTAAATAAACGCTTAC 159014 29 100.0 32 ............................. CTAATACGGCGGCTCTTGAGCGAGTCGCAGCG 159075 29 100.0 32 ............................. TTGTTTTGAGCTTCCCATTCTTGCATATCGAT 159136 29 100.0 32 ............................. GCTACCCGATTAGCCATTCAAACCTGTATATA 159197 29 100.0 32 ............................. CGCCTAATTGAGTTAGGCCAAGAACGAAAAGC 159258 29 100.0 33 ............................. TTTAAAGAACTAGCTGAGTTCGCGACCCCAGAC 159320 29 100.0 33 ............................. GGTAATCACTGGCATTATAACCATGACTTATGC 159382 29 100.0 33 ............................. AACATACGCACCATACACAGCACTTTGAGTTGC 159444 29 100.0 32 ............................. CTCCAGCATGTCATCGAACGAGCGTTCAGGGT 159505 29 96.6 32 ....................A........ TTTTTGGCCCAACGTTCGGCTTTACGCTTTAT 159566 29 100.0 32 ............................. AATTCAAAGAACGCACTCACTCTCGAAATTGC 159627 29 100.0 32 ............................. TGTGCGAACATAGCGCGCATATTTGTTTAAGA 159688 29 100.0 32 ............................. TACTGAGCTATAGCGCTTCGAGTCATACTTTC 159749 29 100.0 32 ............................. TGTGGCTGTGTCAACTGGAGTGGTGGCCGTCA 159810 29 100.0 32 ............................. TGACAACAAACTCCCTGCCATCGTTTGTTAGA 159871 29 82.8 0 A.G.........CA............T.. | ========== ====== ====== ====== ============================= ================================= ================== 51 29 98.3 32 GTCTTCCCCGTATGCACGGGGCTAAACCG # Left flank : CGTATGAAGATGCGCAACCTCCAGCAATACCTGAACCAGAATCTATTGGTGACGATGGCCATCGCAGCGGTGGTCCATTATGAGTATGTGTGTTGTTGTAACGGAAGCAGTACCGCCTAGGTTGAGAGGAAGGCTCGCTGTATGGCTGTTGGAAATCAGAGCGGGCGTATATGTGGGCGATATTAGCCGCCGTGTTAGAGAAATGGTGTGGTTTCAAGTCGGTGAGTTAGCCGAAAATGGTAATGTAGTAATGGCATGGGCAACTAATACTGAGTCCGGCTTTGACTTTGTCACTTACGGAAAAAACGCCCGAATGCCAATTGATTTTGACGGACTGAGATTAGTGAAATATACACCGCAAGAAAGCTCTTCTATTGATGATGAATAATTGTTTTGCTCTTTAAAAATATGGCTATTTAAAACCTCATATTGTACCTAAAATTTTTGGTAGATTTTTATTCGTTAAATTTACTTATATAAATCAATGGTATAAATTTAGA # Right flank : GAATCTCAGGACTATGGTGCCAATACGTCCATGCGTGTTCCCCGTATGCACGATATTTATCAGGATGACGACGGTTCTCTTGGTGTGTTGGTTTTATTTAAGTGCTCCCTTGGCCGCCTTCCCGTGCTTGCCCCGGGTTCCATATCCGTATTTCGCTGCAATCGATATTTACCAACCAAACTGTAATGGGGGTTTCCACTTTGGCATCCTTTGATGCAACTTGTCACCTTTTGTATGTTGAGTGTCACGATCTGTCAGTGTGTGGCGCGTTTTGAATGCTTATACTGAGCACATTGAATCAACGGGGTTTAAACAGAGGTAAAACACATGGCAAATACAGCATTAATCACAGGCGCATCGGGCGGTATTGGACTTGAATTAGCACACTTGCATGCACAGCAAGGGGGTGACTTAGTCTTGGTAGCGCGCTCTCAAGATAAGTTGGATGCCTTGGCAAAAGAGCTTGAGGTTAAGCACAGTATTAAAACGACCGTGATTAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGTATGCACGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTATGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //