Array 1 1-1228 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJS01000038.1 Moraxella osloensis strain UMB0416 .16933_8_26.38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1 28 100.0 32 ............................ TAACTCTAAACGTCTAGCGCGTAAAGCCTATT 61 28 100.0 32 ............................ AACATTAAAGCACTTAAAATTGACAATATCCG 121 28 100.0 32 ............................ GAACCTTATAAGACAATTCCAATCCCTACTGT 181 28 100.0 32 ............................ TATTCTTTGCCGTGACGATGACGAGTACAGGC 241 28 100.0 32 ............................ GTAACTTTCCATACACTTCCGCCAATGTCTTT 301 28 100.0 32 ............................ AATCCGAAATTGCCAAGCACTTGAAAATGAAG 361 28 100.0 32 ............................ CAGAGCGCGGCATTGCTTCATGTGCAGATTAA 421 28 100.0 32 ............................ TAACGAAGAGATGTTTGATGAACCTGTTGATA 481 28 100.0 32 ............................ ATTCAAACCGTCGCCATTAAGCAGCTGCTTTT 541 28 100.0 32 ............................ TGATGATAATTATGCTGAAGCGGTTATCAAGC 601 28 100.0 32 ............................ ATTTTAGATAATGCGCCGATGCCAACTGCAAT 661 28 100.0 32 ............................ GTGTATTCGTCAATAATCGATGCAATATCAAT 721 28 100.0 32 ............................ ATTCAAACCGTCGCCATTAAGCAGCTGCTTTT 781 28 100.0 32 ............................ ATTGGCCGTGGTTATCCTGCGCGCAACTATCA 841 28 100.0 32 ............................ ATTTTAGATAATGCGCCGATGCCAACTGCAAT 901 28 100.0 32 ............................ TTGCCACCCTGTTATTTTTTCAAACTTCACAG 961 28 100.0 32 ............................ GATGGACCGCATTTTGAGTTACCGGCTTAATC 1021 28 100.0 32 ............................ ACGCAGGATTGTTTGAGTAAGCTGTCTTAAAC 1081 28 100.0 32 ............................ TGGAATGAATTTATTGAAATGGTAACGCTAAA 1141 28 100.0 32 ............................ TAACTCTAAACGTCTAGCGCGTAAAGCCTATT 1201 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : | # Right flank : AACATTAAAGCACTTAAAATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 511-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJS01000044.1 Moraxella osloensis strain UMB0416 .16933_8_26.44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 510 28 100.0 32 ............................ ATTAAGATAAGCCGTTGTTCTACTAGGCTTAG 450 28 100.0 32 ............................ TGTGCAAGCGTCCTTCCTGCGCTCTGCCAATT 390 28 100.0 32 ............................ GTTTACCCATCGCCACGCTAATCAATCTCAAT 330 28 100.0 32 ............................ TTGCTTACGATGATTACGCCAAAGACTACACC 270 28 100.0 32 ............................ AAGAACAAAATAAAAAACAAAGTGAGCTAACC 210 28 100.0 32 ............................ ATTTCCCAAAAGAAATTTGGGTTATCCTTCGC 150 28 100.0 32 ............................ TTTCTCTGGGCTTTTAGCATTATAGCGTTTAA 90 28 100.0 32 ............................ AACGGAGCAAAAAGAACAAAAACAAGGTTTTG 30 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : | # Right flank : AAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [3.3-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 90269-89941 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJS01000006.1 Moraxella osloensis strain UMB0416 .16933_8_26.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 90268 28 100.0 32 ............................ TTTTTACTATGTATTGCTTATACCGTTTACAA 90208 28 96.4 32 .............T.............. AAACATTCTTAATTGGCTACCTATTTTCCTTA 90148 28 96.4 32 .............T.............. TTCGACCAAACGAACATAGTTGGCAGCAAAAA 90088 28 100.0 32 ............................ TGTTCCAACTTCAGAATCCAAATAATCAAACT 90028 28 100.0 32 ............................ TTACGAGTCTTTGCCAACCTCATTTACTGGCA 89968 28 71.4 0 C.........G..T.....A..G..TCT | ========== ====== ====== ====== ============================ ================================ ================== 6 28 94.0 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : CCCCCGCAGTAGTTCGATGAGGCTGTGGTTGTCGATTTGGTCAATGCTTAGCTTTATTGACATCCCGTTATGACTGGAAATTTGAAGTTGTATGCCCGTAATGGTCGGTGTTATGGCAGTTGTTTGTGGTATTGGTTCATGCTTGGCTTTATGTTGCAGGGTAATAGGTAAAAAAGCAGGCTCATGCTCAATGAGGTTAGTTTCAATATTTGAGTTGGATAATGGTTGAGCTAAGGTTGCTACGATTTTCTCGTCTCTAGTAGCTTTTATCCATTTCTGCAGTAAGTTCGGGTTGATGCCGTGACCTTGAGCGAGATTTGCTATCGAGCGTTGGCCTGTTAAGGCTTGTTCTACGAGATAGGCCTTGAGTTCTTTGCTGTATGTCCGTCGCTTCGGTTTGGTTATGTCTATTTGTGCCATTTTAGTGCCCACTTCATTTTTAGTGGGCACTATCTCGCATTTTTTAGGTTGCTACTAGATGGGATGGTCGGATGCTTACA # Right flank : TAATTAGTAAAACAGTGAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTAAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCGTTCAATTTCTGTAGTGAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATTCTCGAAAAACCACGTAAACACTTGATATCACTGCAATAAAAAAGCCCCAATCAATCGATTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTATATGCCTAAAAGGGTCTAACAATCTACTTGTGTAAGTAGGAGTGCCATTTTACCAAAAAATTTTGCTTTTGCAAGTGGTTTTAATTTTTCCCTTCAATTTTTATTGCGCCCTCTTCAGCTAAGTTTTCGTTAAGGTTAGGTTGTTTTAATACACTCAGCCACTCGGATATACCTCAGTA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.30,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 193738-202894 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJS01000003.1 Moraxella osloensis strain UMB0416 .16933_8_26.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 193738 28 100.0 32 ............................ CAGCGGATAAGTTAGATAAATTCAAAGCAGGG 193798 28 100.0 32 ............................ ATTAAGATAAGCCGTTGTTCTACTAGGCTTAG 193858 28 100.0 32 ............................ TGTGCAAGCGTCCTTCCTGCGCTCTGCCAATT 193918 28 100.0 32 ............................ GTTTACCCATCGCCACGCTAATCAATCTCAAT 193978 28 100.0 32 ............................ TTGCTTACGATGATTACGCCAAAGACTACACC 194038 28 100.0 32 ............................ AAGAACAAAATAAAAAACAAAGTGAGCTAACC 194098 28 100.0 32 ............................ ATTTCCCAAAAGAAATTTGGGTTATCCTTCGC 194158 28 100.0 32 ............................ TTTCTCTGGGCTTTTAGCATTATAGCGTTTAA 194218 28 100.0 32 ............................ AACGGAGCAAAAAGAACAAAAACAAGGTTTTG 194278 28 100.0 32 ............................ ATTAAGATAAGCCGTTGTTCTACTAGGCTTAG 194338 28 100.0 32 ............................ TGTGCAAGCGTCCTTCCTGCGCTCTGCCAATT 194398 28 100.0 32 ............................ GTTTACCCATCGCCACGCTAATCAATCTCAAT 194458 28 100.0 32 ............................ TTGCTTACGATGATTACGCCAAAGACTACACC 194518 28 100.0 32 ............................ AAGAACAAAATAAAAAACAAAGTGAGCTAACC 194578 28 100.0 32 ............................ ATTTCCCAAAAGAAATTTGGGTTATCCTTCGC 194638 28 100.0 32 ............................ TTTCTCTGGGCTTTTAGCATTATAGCGTTTAA 194698 28 100.0 32 ............................ AACGGAGCAAAAAGAACAAAAACAAGGTTTTG 194758 28 100.0 32 ............................ ATGTCGGTGCTTCTTGTCGTGGTATTCCTGGC 194818 28 100.0 32 ............................ TTATAAAAAACCGGTTTGGGTTGGATACGACC 194878 28 100.0 32 ............................ ACTAATGCGCTCAAATGATAGATAAAGTAAGC 194938 28 100.0 32 ............................ ATGAGTCGCCACTTACCATCCATGCAAAGCGT 194998 28 100.0 32 ............................ AGCCACCGTTGGGTAAGGCAAAACGCACCGTG 195058 28 100.0 32 ............................ CCTTGAATGTCCCCTAACATATCTTCAATCTC 195118 28 100.0 32 ............................ CCTTGAATGTCCCCTAACATATCTTCAATCTC 195178 28 100.0 32 ............................ TAGAAAAAGGCTGCTTATTCGTCAATCGCAGT 195238 28 100.0 32 ............................ TACAGACCCCACCACACCCACCACACCTGAAA 195298 28 100.0 32 ............................ TTGAGAAGGGGCTTTTGTATCTTTATATTTGA 195358 28 100.0 32 ............................ TAGCTTGTTGAATTGGATGTTGCCAGCTTTAA 195418 28 100.0 32 ............................ CGTACTCGATTTGCAGTCCCAAATATTGATGC 195478 28 100.0 32 ............................ AGGATGCGATAAAAGCTTATATGGCGTCATAT 195538 28 100.0 32 ............................ ACTGACCCAATTTGACCAGTCCGACACGTTGC 195598 28 100.0 32 ............................ CGCAAAACAAAGCACGACCGCCGCGATTAGAA 195658 28 100.0 32 ............................ ACTTTTTTTAACCGCATATCACGATAGCGCGT 195718 28 100.0 32 ............................ AATGTGAGCGGTGAGCGTGTGTCAGCCGTGGG 195778 28 100.0 32 ............................ ACACCGTATGCTTTTTCATTGGTACAGAGTGG 195838 28 100.0 32 ............................ AGTGAAATAATCAGATAGGTTTTGTGGGATGT 195898 28 100.0 32 ............................ CTGTGCGACTGGCTCCGTTAAACTGCAACGTG 195958 28 100.0 32 ............................ AATGGAATTGATGTATATGAGATGGTCAGAGA 196018 28 100.0 32 ............................ AACGGGGCAATTTATACAGACAGCCAAGGCAG 196078 28 100.0 32 ............................ CAATGTCGATATCGCAGCTATACATACCCCTA 196138 28 100.0 32 ............................ TAGGTCAAAGTAATCTTTTGCGTCAAGCGTCA 196198 28 100.0 32 ............................ AATTACCTTAGCAGCTTTACGCTGTGATAGCC 196258 28 100.0 32 ............................ AGTATTTAACTTAAACCCAGTCAGACCAAAAA 196318 28 100.0 32 ............................ AGTGCGTCAAAAGGTATCAATGGCGATGTAGT 196378 28 100.0 32 ............................ CTAGCGAGTGGCTAGGGCGGTGGGTTAGTTTG 196438 28 100.0 32 ............................ AATACAGCCCCGCCAAATTGTCTGCTTTTGAT 196498 28 100.0 32 ............................ AAGCAATGCCTGATACTGCACTGACCGCATTT 196558 28 100.0 32 ............................ TGTAGATTTTGCACGGCTATTGGCAATCTCTT 196618 28 96.4 32 .............C.............. GCCCTGTTGAGATTAAAAATCTTGCCTGGGGT 196678 28 96.4 32 .............C.............. TGCTTTAAAATCGCCAAAGCGGTTTTGATATT 196738 28 96.4 32 .............C.............. GACAGGGACATTTTTAGGGGCTTCATCTTGTG 196798 28 96.4 32 .............C.............. GCAATTATGGCAGGACTTTCGATGGGTAAAGT 196858 28 100.0 32 ............................ TACTTTGTGAATTATTGACCGAAGTTAAAGCT 196918 28 100.0 32 ............................ TTACTTGAACAAGCAAGGCAAGAACATTACGC 196978 28 100.0 32 ............................ TTTACACAAAGAAAGACAGTTACCTATTTTAA 197038 28 100.0 32 ............................ AAAACCACCGACCCCACTGTTGAAGCCATTTA 197098 28 100.0 32 ............................ GCCGTGCATGACAATGGCAAATTGTTGTCCGG 197158 28 100.0 32 ............................ AAAAACTTACGCATGGCGGGTTTAACTGTACA 197218 28 100.0 32 ............................ CATCGAAAGTCCTGCCATAATTGCCGGGCGCA 197278 28 100.0 32 ............................ TTGGCATCAAAGACGCGCCTAAGACTTGGCAT 197338 28 100.0 32 ............................ TAGCGGTTATCAAGTCGCAAAATCAGCGTACC 197398 28 96.4 32 .............C.............. AAACATAACCCTCGCTATCAATCACTGCACTT 197458 28 96.4 32 .............C.............. TTGGCATCAAAGACGCGCCTAAGACTTGGCAT 197518 28 100.0 32 ............................ TAGCGGTTATCAAGTCGCAAAATCAGCGTACC 197578 28 100.0 32 ............................ CAGCGACCACTGTAGCGACTTATACGATTATC 197638 28 100.0 32 ............................ TGGTCAAACTTCAAATCAGACTGGGCTTTTTT 197698 28 100.0 32 ............................ GTGATATCAGTAATGCTGATGCGGTTCGTGAC 197758 28 100.0 32 ............................ CGGCAAAGTACCTGACAACCATGTTGTACGCT 197818 28 100.0 32 ............................ GATTATCGGTTATCGAAAATATGAAAGCTATA 197878 28 100.0 32 ............................ AACGTAAATTACCCGAGGGCGTCCGCGTCCGA 197938 28 100.0 32 ............................ ATTCAAACCGTCGCCATTAAGCAGCTGCTTTT 197998 28 100.0 32 ............................ TGATGATAATTATGCTGAAGCGGTTATCAAGC 198058 28 100.0 32 ............................ ATTTTAGATAATGCGCCGATGCCAACTGCAAT 198118 28 100.0 32 ............................ GTGTATTCGTCAATAATCGATGCAATATCAAT 198178 28 100.0 32 ............................ ATTCAAACCGTCGCCATTAAGCAGCTGCTTTT 198238 28 100.0 32 ............................ ATTGGCCGTGGTTATCCTGCGCGCAACTATCA 198298 28 100.0 32 ............................ ATTTTAGATAATGCGCCGATGCCAACTGCAAT 198358 28 100.0 32 ............................ TTGCCACCCTGTTATTTTTTCAAACTTCACAG 198418 28 100.0 32 ............................ GATGGACCGCATTTTGAGTTACCGGCTTAATC 198478 28 100.0 32 ............................ ACGCAGGATTGTTTGAGTAAGCTGTCTTAAAC 198538 28 100.0 32 ............................ TAACTCTAAACGTCTAGCGCGTAAAGCCTATT 198598 28 100.0 32 ............................ AACATTAAAGCACTTAAAATTGACAATATCCG 198658 28 100.0 32 ............................ GAACCTTATAAGACAATTCCAATCCCTACTGT 198718 28 100.0 32 ............................ TATTCTTTGCCGTGACGATGACGAGTACAGGC 198778 28 100.0 32 ............................ GTAACTTTCCATACACTTCCGCCAATGTCTTT 198838 28 100.0 32 ............................ AATCCGAAATTGCCAAGCACTTGAAAATGAAG 198898 28 100.0 32 ............................ CAGAGCGCGGCATTGCTTCATGTGCAGATTAA 198958 28 100.0 32 ............................ TAACGAAGAGATGTTTGATGAACCTGTTGATA 199018 28 100.0 32 ............................ AACGGAATCAACTTTTGAGCCGACTTTGTCAC 199078 28 100.0 32 ............................ ATTGTCATTTTGGTAAGATTCCATTTTTGCTG 199138 28 100.0 32 ............................ GTTGGATTGATTTACGTCTGCAAGCCCTACCC 199198 28 100.0 32 ............................ ATTGAGACCAGTGACGTTTTTTGATAATGCAA 199258 28 100.0 32 ............................ CAAAAGACACGGTAAAGGCTGAGCGTCTAGGC 199318 28 100.0 32 ............................ AAGCAGTAGTTTAAATTAAGGGTAATCATGAA 199378 28 100.0 32 ............................ AATGCAATGGCACGCAAGCAACACAGCCGACT 199438 28 100.0 32 ............................ CCTGCCAAATGATATCGCGCATAATGATTTTA 199498 28 100.0 32 ............................ AAAAAACTGGACTTTTCACCAATATTAATGCC 199558 28 100.0 32 ............................ GCAAACGCCTGTTTATACCTTTAGCCGTGCAA 199618 28 100.0 32 ............................ CCTGTTACCCAAGATGCAAAACGCCAACCTTG 199678 28 100.0 32 ............................ ATCATCAGTGCTAATATTTCGACACGGCACAT 199738 28 100.0 34 ............................ CGCTGGGATGCGGGTAAAAGAGATAACTATTTTT 199800 28 100.0 32 ............................ AAACTGCCGCCACAATAGTCTAAACTTGGGTC 199860 28 100.0 32 ............................ CAGTGAAGGTGTCGAAAAAACCAAGCCTGAGC 199920 28 100.0 32 ............................ ACAAAGGGATAAACTAGCCACCCCATTACAGG 199980 28 100.0 33 ............................ CAATAAAAAACGCCACCGCCTAAGCGCGTGGCA 200041 28 100.0 32 ............................ ATGAAAATCAGCTCACCATCTATCCCACTCGT 200101 28 100.0 32 ............................ AATGCGCTGCGCTGTTTCATAGATAACTTCAT 200161 28 100.0 32 ............................ AAACTGACGCTATCTTCTAGCTTGTCATAAAT 200221 28 100.0 32 ............................ AAAAAGCAACTAAGCAAGCTATTCAATCAAGA 200281 28 100.0 32 ............................ TCTATACTTTGAGTGCTACCCATGCGGTTATA 200341 28 100.0 32 ............................ ACAAAAGTCCTGGAGTCGTAACGAGCTGTGCA 200401 28 100.0 32 ............................ ATTGGCGCACTCATCAAAAACCAAATCGAGAT 200461 28 100.0 33 ............................ AAACGGCTTTGAGGTGCAGTCAGTTTTATTTCA 200522 28 100.0 32 ............................ ATGTGTATTTATCGCCGTTGGTTGCCACTGGG 200582 28 100.0 32 ............................ TATACCAATATGGGGAAAGTGGGTTAACGGTT 200642 28 100.0 32 ............................ TGTTAAGTCTAGCACTTGGGCAGGGGCATCAT 200702 28 100.0 32 ............................ TAACATGACATTCATAACAAAAAGTTTTTATG 200762 28 100.0 32 ............................ AAGAAAGGCGAAACAGTTACTTACTTGCTGCT 200822 28 100.0 32 ............................ GTGTAATAATGAATACCTGTAAACTTCCCACC 200882 28 100.0 32 ............................ AAGTTGTTGCCGTTTTAGTGGGATTGGTTCGC 200942 28 100.0 32 ............................ TGCAGGCGGTGTGACGGTCATTGGTACAGGCT 201002 28 100.0 32 ............................ CGCTCAGATGTCAGCCATGGGCGGTCAGATTA 201062 28 96.4 33 .............C.............. TGTTGTTCTATGTATTGACGAATCTGTCGTCAA 201123 28 100.0 32 ............................ ACCAAGAAAAATCAAGCCAATTTGAAAAAGAC 201183 28 100.0 32 ............................ TTGAGATTGTTTAGCTAATTATACCACACTAC 201243 28 100.0 33 ............................ CAGTAAAGTAAAAAATATTTGCGGTGCTTCCTT 201304 28 100.0 32 ............................ TTTGGGCGCATCAATGGCGCAATGATTACTAA 201364 28 100.0 32 ............................ GATTTGTTGTTGCATTTGTGCTAACAGTTCAG 201424 28 100.0 32 ............................ GCAGATTATCGCACCAGTTACCCACTAAACCT 201484 28 100.0 32 ............................ TTGCGGCGTAAAATGTTGGGGTCGCGTAATTC 201544 28 100.0 33 ............................ AGTAAAGAATTAACCGCCATGATGTTGGATATT 201605 28 96.4 32 .............C.............. AATTCAAAATATTAGCCGTATCTGTCATTGTT 201665 28 96.4 33 .............C.............. AGACGGATTTGAATATTTAATTATATAATTCCT 201726 28 96.4 32 .............C.............. TGTAGGGCAGTTGTCCGATGTTGGTTTGGAAA 201786 28 96.4 32 .............C.............. TTGCCCCAGCGCATGTGTCGTTTGCCGAAATG 201846 28 100.0 32 ............................ GTTGGGTGAATGATGGATATAATCTGATAGCG 201906 28 100.0 32 ............................ GACAGCAAAAACAGCCAAGGCAGTCACTTTAG 201966 28 100.0 32 ............................ GAGATTGAATTATCCAAAGCCGTAGAGCCACA 202026 28 100.0 32 ............................ ACCACGCAAAACACCGATGCTCACTGAGCCTT 202086 28 100.0 32 ............................ TTAACGCGCTCGGTCTTGCGATACCACAACTC 202146 28 100.0 33 ............................ TCATGGCTTGTTCAAGGTTCTATATCAATCTAT 202207 28 96.4 32 .............C.............. AAAACCACATGACACGCCAGATAGCGCAAGGC 202267 28 100.0 32 ............................ AGGTCATTGATTGATGGGATAGCTGTATATGC 202327 28 100.0 32 ............................ TTGATGACGAAAGAGAGGTGAAAATTTTTGAA 202387 28 100.0 32 ............................ AATCGCCTTACCAGTCTTTTGATTAATGAAAA 202447 28 100.0 32 ............................ AAACATTCTTAATTGGCTACCTATTTTCCTTA 202507 28 100.0 32 ............................ CACCACCATCATAAATCCTAACACCTGCGGTT 202567 28 100.0 32 ............................ ACATCATTTGCTCAGTCATCCGCTCACCACCT 202627 28 100.0 32 ............................ AAACATTCTTAATTGGCTACCTATTTTCCTTA 202687 28 100.0 32 ............................ TTCGACCAAACGAACATAGTTGGCAGCAAAAA 202747 28 96.4 32 .............C.............. TGTTCCAACTTCAGAATCGAAATAATCAAACT 202807 28 96.4 32 .............C.............. TTACGAGTCTTTGCCAACCTCATTTACTGGCA 202867 28 75.0 0 C.........G........A..G..TCT | ========== ====== ====== ====== ============================ ================================== ================== 153 28 99.5 32 ATTCACCGCCACATAGGCGGCTTAGAAA # Left flank : CGTTTGATAGATTATGTACATATCAAACGTATCCAGCCTGTACCCGAAGTGCATGGGCATGTGGTGGTGAGGCGTTACCGCTACAAGAATTTTGACAAAAAGGTGGCGGAGTTTGCCAACTTTAAGGGCATCAGTGACCAAGAAGCGTTGGCGCATTGTCTTGCCCATAAGCGTGCTATCAAACACTACCCTTTTATCACCCTAAAAAGTCAAACCACCCAAAATGACTATAAACTGTCAATTTGGCAAGAAGTGGCGAAGGATGAAAAAAGTGGCAACTTGAATACCTATGGGATGAATAATCAATCAGATGCGGTAACCGTTCCCCACTGGTAATCAACCTTGCCGACAGACTATAAGGGTGAATAACCCTTATTTTTGACTCAATAAAAATAGGTATAAATTTCAATCAGTTATATCCAGGCAGAAAATGTAGGGTAAAAAGGGTATTTTTACTTGGTAAGCCTTGCTATAACTGCTTTTTTTGGGATAAAATTCCT # Right flank : TTAATTAGTAAAACCGTAAAGTTTATTTATTTTTACTAAAGTGACCAAAAACAAGTGGGTGTAAAATTAAAAGTCTTAAAAAAATGCGTGGTCACCAAATGGTCACCTTTTGGTCACCGTTCAATTTCTGTAGTAAAAAAGGTGCCCAAAATCACAAAAGTGGTCAAAATTTCAATCCTCGAAAAACCACGTAAACCCCTGATATCACTGCAATAAAAAAGCCCCAATCAATCGATTGGGGCTTTTGGAATATGGTAGGCATAATCTGACTCGAACAGACGACCCCCACCATGTCAAGGTTTGCCACGATTCGAATCTTATTTTATCTTAATGTACCTTAATATATATTTTCTTTAATATCAATGATTAATAATACGTAATTCCTTTATCAATTTAAATGATTTAAAGTATACTGGAAAATTTAGGGCACAGAGAAACTTCAAAAATTAGAATTTTTTTACCCCCACCCTTTCACTTCATTTAAGAAAAAATAACGTAAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACATAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACCGCCACATAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //