Array 1 41310-43179 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000011.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 41310 37 100.0 36 ..................................... GCACATTGACTTGTTGGGTTACAACTCTGAGATTTG 41383 37 100.0 36 ..................................... TGGCATTGGATCGTACTTCGCTGCCGCCGGACGCCG 41456 37 100.0 37 ..................................... TCGTACCACTCAGCCCATTCGGTCGTCAGCTTAGCCA 41530 37 100.0 36 ..................................... CGGCCCTGGTGTGATGACACCGACGCCCGTCAGGTC 41603 37 100.0 35 ..................................... CTTCAGAGCCTTCTCCGCGATAGCAATCTCCGGGA 41675 37 100.0 37 ..................................... GGATGCACCGTCACGGTCACACCGCGGATGCGGTCGA 41749 37 100.0 37 ..................................... GCAGCACGAAGTGGTATGTCGAGCCGCCGGAGGACGG 41823 37 100.0 35 ..................................... GATTTTCGGTATCATACCATTTACTAACAGCGTAA 41895 37 100.0 37 ..................................... TTACGACGGGAATCGGTTTGTTTCCGAACCACAAGAC 41969 37 100.0 36 ..................................... GTACACGTCATGGAAAAAGCGGTCGTACATCTCCGT 42042 37 100.0 36 ..................................... CCCAACGGCCTCCGCGCCCCGCTCGCGCAGGCTGCC 42115 37 100.0 40 ..................................... GTTGATGTTTGCCATGTACAGGTCACCTCTCATCAGATTC 42192 37 100.0 34 ..................................... TTCCAGAGCCCCGCATGGCAGAACGCCCCGACGT 42263 37 100.0 36 ..................................... GCCAATGGCGTCAATCCAGTTGTCGATTTTGCGTTG 42336 37 100.0 38 ..................................... CTGCAGGCCACACATACAAGCACGCTGACCATTACCTC 42411 37 100.0 37 ..................................... AAGGCTGTCGGAACGCGTAACAATGACACGGCCGCAA 42485 37 100.0 37 ..................................... CCACAGCGGGCCGGCCCGGAGCCGTTCTTGCGCCTGC 42559 37 100.0 38 ..................................... CCGCCCCCGGCGGAACGTCCTCCATGACCGCTTACTGC 42634 37 100.0 36 ..................................... TTCGGAAACGGGAGCATGCCGGGTGGTGTGCTCAAG 42707 37 100.0 39 ..................................... ACTGTCTCCACGCACCAGTACCATGTGTGCACGGGCGAC 42783 37 100.0 35 ..................................... ATCCAATGGTGTCAAGCGGGCGAATGGGATTCCGC 42855 37 100.0 34 ..................................... TCCATTTTCCGCAGCCTCCCATCTGCGTATTTCC 42926 37 100.0 36 ..................................... TTTGTTACGTGACCTCTCATCAGCGATGAACACCTC 42999 37 97.3 36 .................A................... CTCGTGTGGTGATAGTGCCTACGTAGTGCTCTTCGT 43072 37 100.0 34 ..................................... GCGAAGGACCAGTTGAGTTGGCTGTTGAACGAAA 43143 37 97.3 0 ....................................G | ========== ====== ====== ====== ===================================== ======================================== ================== 26 37 99.8 36 GTTGATCCGCGGACGAAGTCTGCGGCCCCATTGAAGC # Left flank : GGGTAGACAAAAGGCATGGTAAGTTGTGTCGGATCTGCCGTCATGAACCGAACGCCAGCGAATTAGAACCAGCGTACTAGAAAAGCGTTCGGCATCCACGATGTGAGCACAGCAATCCGTGATCGTCAATCCTGTTCGGCAGCCTGTCGACGTACGTGGTGCTGTAGGTTAGGAATGGGCAGCAAAGTTTACGATGAAGTGATTTGCTGCTGGGTAATGGCTGAGCGGCGTGACATTTTGGGGCATGGGATGATCCAGACCGCGGGAGAATTACGGCATAAAGGAAGACGGCTTTCAAACTACGCAGCTTTGCGCGAACCCTGTGTGACGGCGAAATACCGGGGGTTTCGCGCATTCCTGGAAACCCGCATGATATCTGGATTTTTTGCTTCGGAGCGGCTACAATGAGGGCGTCTGCAACGGTTGAGGTGCATGTATTCTTGAGGGGTTCGCGGAAATCGGCTGAGATTCCGCGTCATGACTGGGGTGGCTCGGGAAGA # Right flank : GAAGTAAGTGAAGCCAAGGGCTGGTCCTGCGCGTCGAGCGACCAGAAGTACCCGCCGTGCTCCGCGTCGAAGAAGTCCGGCTGCAGCACCACGTACGCCGCGTCGGCCATGTCGCGGTACGCCGCGAGAACCGCCGCCCAATCCGCAGTCGAATCCGCGGCCCTTTCTGCCACCCTGTCCGCAGCCCAGTCCGCGGCACCGCGCACCGCCCTGCCCGGCTCGTCGGCGGGGTCCACACCAGGATGTGCCACTGTGCCACTGTGCCGCCGTGCCGTCATCCGGCGCACAAAGCGGGCCCAGCATCCGCGCGCTTGCCGAAACCGTCCACAGGATGTGGGCGCAGATGACGAGCGATCGCGGCGCGCCCGCGAGCGGATCGCCGCTCGGGCCGACCGCGCCGTGGCATCCGCCCTGTGCCGCATCCCGTGCAAAGCGCAGCCAAAACGGCAGGATGTTGTGCGTCAACATGTCACGGCAGGCGTCCGCCCACGCGTACGCCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCGCGGACGAAGTCTGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 105-1857 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000014.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 105 36 100.0 37 .................................... TCATGGTCGTCTGGTGCAGTTCCAAATCGTGCGGTTA 178 36 100.0 36 .................................... GGAGTTCAAGGAGGAGGACGAAGAAAGAGGACGGTG 250 36 100.0 35 .................................... CCATTCACGTCGCATGGATACAATCCTATTATTGC 321 36 100.0 34 .................................... TTTGAGGTACGTCACCCGTCCGAACGGTACTTTG 391 36 100.0 35 .................................... GGAAGTGTGGGGTTGACATCGGCATTGGTTGACGA 462 36 100.0 36 .................................... AACAAGACCCAAACCGTGTGAATCAATTGCTCAAGC 534 36 100.0 35 .................................... TCCCATTTCACACCAGTCGCACCCTCTAGTTTCTC 605 36 100.0 35 .................................... GCACTGCACGTAGTCGTGTCTGTGGGTAGACTCAA 676 36 100.0 37 .................................... GTTCCCGAACAGATACAAAAATCTAGATTCGATGTAG 749 36 100.0 36 .................................... CTTGGGAAACAGATAGAGGTGAGCGCATATGGCTGA 821 36 100.0 37 .................................... GCGCATGGCGTGCGGCATGTGTTGGACGGCGACCATG 894 36 100.0 35 .................................... TCTCGAACGCATTGGCATGGCGCGGACAACGATCT 965 36 100.0 34 .................................... TCTGACTTTTTGTTACTGTTGTCAAGGCTGTCAA 1035 36 100.0 35 .................................... GGGATATATATCCACCTTTCGCGCCAACCGCGACG 1106 36 100.0 35 .................................... CAAAAAAGTTCGTCTGGATCTCTTTCAAACAGCTT 1177 36 100.0 35 .................................... TCTAGTTCGATTGAAGAACAGGCGCCCACTATCGA 1248 36 100.0 37 .................................... GGCCAATTGAACCGTCACATCTCCGCGCTTCCAGAAG 1321 36 100.0 35 .................................... TTGAACCATGTGTTCTGGACACGCGACGCCAATGA 1392 36 100.0 35 .................................... CGTAGCTGGTGAACTTGTGGATGCAAAGACGGGAA 1463 36 100.0 35 .................................... TTCTCGGCTCAGCATAATCACCACTCCAAAGGAAC 1534 36 100.0 37 .................................... CTTCGTTGGAGCCCAAACGACAGGGCCGTGCCACGAA 1607 36 100.0 34 .................................... AATGATGACTGCGTGCGACTTGCGCGGCTCACGC 1677 36 100.0 37 .................................... TCATTGTACTCAAACGGCAGTTTGAACTGGCTGGACA 1750 36 100.0 36 .................................... GATATTTCCAGAGGAGGAATTTCCACATGAGCGACA 1822 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 25 36 100.0 36 GTCGGAACGATGAACAAGGGATCGAAGAAGTGGCAC # Left flank : GGTTGTTCGTCATGCATGAGTTTGGGGGAGCCGTGGAGGGAATGCAAGGTGGGCGGGATTTGACGCTTACGAAGTTCCTTGGCAATCTCAGTGGATGGAAATGCG # Right flank : CCAGACATACCCCCTCACCCCCGGGCCACTCCATCCCGCCCCAACAGCCGGGCGGCGTGCCCTTCCGCCGCCCAGCGCGCCAGATACGCGACAAACGCGTCCATGGCGCGCGTGCGGAACTGCGACGGGTGCATGAGCCATGAGAACTCGCGCTGCAGCGGCACGCCCCGCACGCGCAAGGCGCGCAGGGTGTCGAGGGCCCGCTCCTTGCGGATGGCCCATTCGGAGACCACGGCGACGCCGAGCCCCGCCTCGACCGACTCCTTGATCACCTGCGTGCTGCCGAACTCCATCAGCGTGCGTGGCACAAACCCGGCCTGCTGAAACAGCCGATCCGCCACGTCCCGCGTCCCGGACCCGCGCTCGCGGACAATCCAGGTCTCGTCCGCCAACTCTTCCGGCTCCACCTCCGTACGGTTCGCCCAGCGGTGCTGGCGGCCGACGATGACCACCAGCGTGTCGGCAAGGAACGGCCGCACCTCCAGGCGGAGCTTCGGATC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACGATGAACAAGGGATCGAAGAAGTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA // Array 2 5299-6287 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000014.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence014, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 5299 37 94.6 36 C..................C................. TTTGAGGCGGTTGCGCCGGTCGCGTTGAAAGTCAGT 5372 37 100.0 39 ..................................... GCACTAATCCAAACACCTTTACCACTATCTGGCCGATAT 5448 37 100.0 35 ..................................... GCGGCTCGGGTTCCAGGTGAGCGCGGTGGCCTCGG 5520 37 100.0 38 ..................................... AGCCGCCGGAGACGGCGCAGGACGTGCGGCGGATACTG 5595 37 100.0 35 ..................................... GTTCTCTGTGCAGCCGCTGCACGCCGGTGTGTAAG 5667 37 100.0 36 ..................................... GCACAGGATGTTCCTCATCCCATGCGGTTTGCTCCA 5740 37 100.0 37 ..................................... TCTGCGAATTTTCGGGAGTCGTGAGAGAGGCTTTCAG 5814 37 100.0 37 ..................................... ACATCGTGGCTCAATCGTCTCATTCTGACGCTGCAAG 5888 37 100.0 35 ..................................... GACAAGGCGGAGCGGATTGCAGCTCGCGCCAAGAA 5960 37 100.0 36 ..................................... GATCGCGGAGCACACGGGCTGGACCGCGCATGATGT 6033 37 100.0 35 ..................................... GCAGTCCTATCTCGACATCGGCAAGAAGTATGGGA 6105 37 100.0 37 ..................................... GCACGCCGACGGCGTTGTCGATGGCAAACGCGGTCGG 6179 37 100.0 35 ..................................... TCCGAACAGCATGGTTATCACAGCGCCCCACGGCG 6251 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 14 37 99.6 36 GCTTCAATGGGGCCGCGGATCACGTCCGCGGAGCAAC # Left flank : CCTTTGTATCCCTTTTGCGCCGGTTCCATCTTGTGGCGCAGAATGAACGACTCGACAAAGCGATCGATGTCGAGCGTGGTGATGCCGGGACGGATGAGCTTGGCGAGCGCTTCATGGCACGCGGCGACCACCTTTCCGGCTTCGCGCATGAGGCTGATTTCGTAACGGCTCTTGATGGTGATCACGCTGCTTCCTCCCCTGCTGTCGCCGTGTGTCGCTCTCCTCAGGGTACCACAGAAGGGACAGGGGAGGGTAGGAAGCCGCGCATGGTGACGGGGTGAGTGACGGGGAAGCAGGGTTTTGGCGACGGTTCGGGCCTCCTGTCCGTACCATGCTGTGCGTCCTCCGCATGGAATGGTTATGGCTTCAAGCACGGCACCGGCCACGGCGGGTCCAGGGGTGCCGGTCGGATCGTTCAGGAGGAAGAAGCGTTGGCAGCACAACGAGTGTTTGGCATCCTGCTCGCGACGTACGATGCAGAACATGAGACACACACGCAT # Right flank : CGCCTCTCTATCCAGCCCTGTCCTGACGCGGAATCCCGGCCAAATTCCGCGAACTCCTCCGCATGAGATGCACCGCTGCCGCTTCAGACGCCTTCATTGTACCCCCTTCTTGGCAAAAAATCCAGATATCTCGCGGGTTACCTGGATTGCGCGAAACCCCCGGGGTTCGGCCATCACTCCGGGTTCGCGCAGTTCGCGCGACGGCTGTCGGATACTGCTTCAGGGCCCAACCTGGGATTATCCCGGCTCGTTCTCCTTCCTTCGGCCCCATGCTGACAGACTTCAACCACCTGGCCAAGCGGTCAACCGACCCAGCCATCGCTTCCTCCCCATTCCGATTCATTCCGATCCCGCTGGATAACCATGTGGCCCACCGTGTCGTTGTCCGCCCCCACGGGTATCTCATGCTCAGGCTCTCAACCCCGCCGCTCCTCTATGCCCCATCGAAATATCCACGATGAATATCAACCCTACCATCCGGACATGCTAGATCACGAAAC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCGGATCACGTCCGCGGAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0.41 Confidence: MEDIUM] # Array family : NA // Array 3 22267-20101 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000014.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 22266 37 100.0 38 ..................................... TCTACTTGCCGCCAGGTAGCTCCGTGATTCCGGCGGGA 22191 37 100.0 36 ..................................... ACGGTGCTCAACTGCGGAGAGATGTCCCCAAGCGGC 22118 37 100.0 36 ..................................... TGTCTGAGAAACTCGGCATCCCTACTGCCAAGCTTC 22045 37 100.0 36 ..................................... TCCTTGCTTATTCTTCTTCGACAAGAGTTCGATGGC 21972 37 100.0 36 ..................................... ACTTCAAACCGTCGCGTTATGGTCGGTTTGACGAAC 21899 37 100.0 36 ..................................... GTCCAAGAGGTAAGCAAGGATCCTCGCTACTCAGGC 21826 37 100.0 37 ..................................... TTCTCGTAGAACCTTGTGATTTTGGCGAGGAGCTTAC 21752 37 100.0 38 ..................................... CCCGGCCACTGACTGACGCTTTGGACCCCCTCTTCTGC 21677 37 100.0 36 ..................................... GTTCACCACCTCTCTGCTTGTCCCATCTCAGGCGGC 21604 37 100.0 36 ..................................... GAAGGCCGGGCGGGCGGCCGGCAGGCCGTCCCTTCC 21531 37 100.0 36 ..................................... TAAGAAGCGATTTACTCTCGCTTGAAAAATCTCTGG 21458 37 100.0 35 ..................................... GAGGTGCTCAATAAGCTGGCGATGGATGGGCCGTC 21386 37 100.0 35 ..................................... CTGTAGTAGATCGACAGAACCATCACGTCCGTCTC 21314 37 100.0 38 ..................................... ACGCGATTGCGCGCGGCTTCAAACGTCGCAAAAACATC 21239 37 100.0 39 ..................................... CCGTTTGGAACGCAAGGAAAAGTCTTCCTCCTTCGTGAA 21163 37 100.0 34 ..................................... TTTCTTATGACGGTCGTCAAGTGTCTGTTAATGG 21092 37 100.0 37 ..................................... GTCGTCTGGCAGCCGGACCCGGAGGTAGTGACACCCG 21018 37 100.0 34 ..................................... TTTCTTATGACGGTCGTCAAGTGTCTGTTAATGG 20947 37 100.0 37 ..................................... GTCGTCTGGCAGCCGGACCCGGAGGTAGTGACACCCG 20873 37 100.0 34 ..................................... TTTCTTATGACGGTCGTCAAGTGTCTGTTAATGG 20802 37 100.0 37 ..................................... AACGGTTGAGGACTTGGCATTGCAGTTCGCGGAAGCT 20728 37 100.0 35 ..................................... GTAGAACCACTCCTCACAGAAGGGATCTGATAAAA 20656 37 100.0 37 ..................................... ACCATGGGCCTGTTGGTAGTGGAAAAAGCTACTGTGC 20582 37 97.3 37 ................T.................... GTCTTGATGTCGTTGTACGCATTCTGTTGATTGGCAT 20508 37 97.3 37 ................T.................... ATGTTGCAAGACGCCGATCCCAACACTGTTATACACG 20434 37 97.3 39 ................T.................... TCACCAGGATCGGGCGCCCGGGATAGTGCCGCTCCTTCC 20358 37 97.3 38 ................T.................... TTTCTTTCCATCCTCCTTACGGGACTTCTCGGCTTCGT 20283 37 100.0 36 ..................................... TCGATCCGACAATCGGTCCACTGCCTGTCCCCCATG 20210 37 97.3 36 ................T.................... AGCCCGTGCTTGGTCGGCGCGTCGGCGCTCAGCACC 20137 37 94.6 0 ................T...................T | ========== ====== ====== ====== ===================================== ======================================= ================== 30 37 99.4 36 GTTGATCCGCGGACGAAGTCCGCGGCCCCATTGAAGC # Left flank : CTGACGTTCGGCCTGTTCACGTTCGTGATCAACGCCTTGTGCTTTTGGCTCGCGGCGGCGTTGACGCCCGGGTTTGTCGTGCACGGTTTCTTGGCTGCACTGGTCGGCGCACTGTTGACCAGCGTGATTGGCGGGGTGTTGCACCGATTGGCACGATGAAGAGCAGGAATTTTGAGGAGCAGGAGTTTTGAGGCGCGGGAGTTTTGAGGCGCGAGGGTTGACGCAGACGATGGCTCTTGTGCAAGCACCGGGGCATCGGAGGCAGCGGGTTTGCGGATCTGCGCACACTGGCGGTGTCCAGCAAGTTTCCTGCGCGAACCCCCAGTGACGGCGAAACCCCGGGGGTTTCGCGGAAACCCGGGAACGCGTGAGATGTCTGGATTTTTCGCCATGGAGCGGGTACAATGAGGACGTCTGCAGCAGTTGAAGGGCATGTGTTCTTGGGGGGTTCGCGGAAATCGGCTGAGATTCCGCGTCGTGACTGGGCTGGATCGGGAGGC # Right flank : GGTCATCCCCGCGGCTCGATGGCAGCATCCACACGGCTCCGCGGTTGAAACCATGTCTGAGCCACCATGGTAGGCACCAACGCGCTCAAGATCACCACCGTCACCAGCACGGTGTACTGCGCCTGCGTGATGATATGGTGGCTCAGCCCATATAAGGATGAAATCGTGCCGAAGGTGAGTCCTGTGGCCATCAGCAGCGTGGTGTAGTTGGCTTCGCGGGCCGCATAACCCAACATGGAAGCGAGTGGGCGGACGCCCATGATTTTGGTGACCATTTTGACGCCGAAGAAGATGAGGATGAGCCATGCGTTGTGCCACACGTCCGGCAGCGACACATACAGACCCGCTTTGAGAAAGTAAAACGGCGTCAAGAGCGCAAAGGCCAAGCTGCGCAACCGCCGGGCCACCTCAGGATACCGCAACAACGTACCGGCCAAGACCAACCCCGCCAGATAGGCAGGTAATACCGCCTCGCTCCCCGCCGCGGTCGCCAGCGCGCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGATCCGCGGACGAAGTCCGCGGCCCCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.30,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 1652-121 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000023.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence023, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1651 36 100.0 35 .................................... CATACCCCGCTGTTGCAGCCACTTGAGCGCCTGCT 1580 36 100.0 35 .................................... ATCTGTGCCGCCACGTCCTCCGCTTTGCGCGGCGC 1509 36 100.0 36 .................................... ATCGCAAGGAGCTTGTCCGCATAATGCGGGTCTGTG 1437 36 100.0 35 .................................... TAGTCGGGGTGCAGGTTCCATCGTTCGCTAGCTTC 1366 36 100.0 34 .................................... TGGACCGTGCCGTCCGTATCGACGTAACCATTGA 1296 36 100.0 35 .................................... TCGGACGCGCAGCTGAACGCACTCGAGCAGGCCCG 1225 36 100.0 35 .................................... TCCTCCAGCGCGTCCAGCTTCGCCTCATGCAGCTC 1154 36 100.0 34 .................................... CAGAGTACGAGCGCGAGCGGGGCACTGCAGCACA 1084 36 100.0 35 .................................... AAGTGGAAGACCTGATGGAGTTTCGCGGGAAGAAA 1013 36 100.0 35 .................................... TAGAGACGTACTCAAGCGTGGACCTCGCCAAATGC 942 36 100.0 35 .................................... ACGAGTCAGTTGGCTGCTTCAATGAGTGATGCACT 871 36 100.0 34 .................................... CATGACTCCCATAAACAATGGAAAGCGAAAGGAC 801 36 100.0 38 .................................... ATGTATGCCCCGGTGCGGCCGGACGGATAGTACCGTGA 727 36 100.0 34 .................................... GTCTTGCTCGGGTTGATGTCGCCCGAGATAGCCC 657 36 100.0 36 .................................... TGCAGATGGACAGCGAGCTGCGTTTCGCGGGCATAC 585 36 100.0 37 .................................... ACCACTCAGATCATCAAACGCAACATCAAAGCGCGTA 512 36 100.0 37 .................................... CACCGGGATCGCTGGCACCTGTATCACCTCCTTTCAC 439 36 100.0 36 .................................... ACGCTCCACTCGTCGGTAGCGTAGACGTATTCCTCG 367 36 100.0 34 .................................... TATCCCTTCTCGGTGCGCTCAACCACACATCCGC 297 36 100.0 34 .................................... TCGAGACGGTGTTTCAACACGTGCGCGAGATCAT 227 36 100.0 35 .................................... TTTCCGAAGACAAAAATCTGGATTGGATGAGGCTC 156 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 22 36 100.0 35 GTGATCGAAGCTGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGGTGGGAACTCGCCGCCCTCTTGGCGGAAGAGGACAGTCTTCTCATCGCGCCCATTCATGACGCAGACGTCAACCGCATCGTCCAACTCAACGTGAAAAACATTATCGCCAAATCCGAGGATCGTTTTGAATTGCTTTAGGACGCTGCACTTTTAAGTACCGACTTCGTGCTTCGAAGCTTCATTTCCGAATTTAAGCATCCATAGTACAAGCACCGATTTAGGCATTCAAGCATCAAGGTCATGAAGCGGCGTGGCCTTCATTCCAATCTCGGTTTGCCTTGGTGTTTTCGGACACTCCGCGGGATGAAGGTGTCATTCCATGCTTGAACCAAGGATAAGAGGCCCACAACCCAGAAGTGACAAAGGATTGCGACGGTCGAAGCGTCAGGGCGAGCCGTTGACCAATAAGAACATGTTCTATGGAGGGTGCTTTGTGCTTGGATTCTTGAATGGTCGGAGAGAAATGCTGCGGAAAACCTGGAATTCGGCAGGGTGCT # Right flank : CATGCCGATCTCGTTGTCCTTGATGATGTTGATGATGTGATCGAAGCTGTTGTCCACGCTCGCTTTATTTGACGGCGTTTTTCCAACCGTCATTGTCACCTGGAATTGTGGCGCATTCCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCGAAGCTGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 1 43412-44481 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000016.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 43412 37 100.0 39 ..................................... ACGTCATCATCCCCTTCCGTGTTGGAGTTGTCATCGCTG 43488 37 100.0 40 ..................................... GCTGGATTGCAATTCGCTGATATCTTCGAATCACCACCGC 43565 37 100.0 38 ..................................... AGTCACTGAACGTGATTCCGCGTTCAGTGTCCTTGTCG 43640 37 100.0 36 ..................................... TGTCCCTGCTGGCATGGCCTCAAAAAAGAACACCCC 43713 37 100.0 34 ..................................... GGCTGTGGCAGAGGACGGACGTCATGGGTCTGAC 43784 37 100.0 38 ..................................... CCGGCAATGGTTACAGTCTGTCCGGATACCGAGTGTAT 43859 37 97.3 35 ...............A..................... GTATTGGCCATCATGACCGGGATGCGCCAGGGAGA 43931 37 97.3 38 ...............A..................... CTGATCTACGAGCCGACTGGTGCCGCGCCATCCCCCGC 44006 37 100.0 36 ..................................... GCAGCGTTGACTCCCATCTGACCGGCCTTGTGGAGC 44079 37 97.3 36 ...............A..................... CGCCTCGCTGATGGTGAAGTTGGGAACATGAACCGG 44152 37 97.3 38 ...............A..................... TCCAATGAAACGCGAAGCAACTCGCGGTCTTCATCTGT 44227 37 100.0 36 ..................................... TCCTATGGACTGCTCGGGAAGATGCGGATATAGTGC 44300 37 100.0 36 ..................................... AAGTCGAAATATTTGGTTCCATCACCGTAAATGTAA 44373 37 97.3 35 ...............A..................... TTCCTGCCACCACCTTTCAAAGATATCTAATTCGC 44445 37 89.2 0 .........A.....A........C...........T | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 98.4 37 GTTGCTCCGCGGAGACGATCCGCGGCCCCATTGAAGC # Left flank : ATCGTCAGCATCCTCGCCCACTTCGTGGTCGGCGCCTTGAAGAGCATCGTCACCGTGCGCAGTTGGTGGAAGAGCGGCTTGGAGATGACGCTGGTCGGCGTCATCACCGGCGTGGTTTCGTACGGGCTCGGTTTGGTCGGCGCGAAGGTGTTGTAGGGACGCGCGGCGAGCCTGCCGCGGGGCGGTGGTCCTGCGATGCTGCGATGCGGCGGTTGTCCGACGGGCGGCCGCCTGCGGCGGGCAGCCGATATGGGGCGTTACGGGAAGAGAGGGCGGATTTCAAACGGAGCGGGTTTCAAACCGCGTGGCTTGCGCGAACCCTGAGTGATGGCCAAACCCCGGGGGTTTCGCGCAAGTCCGGAAACCCGCGAGATGTCTGGATTTTTTGCTGAAAAGGGGCTACAATGAGGGCGTCTGCAGCGTCAGAGGTGCAGATGTCGTCGAGGGGTTCGCGGAAATCGGCCGGGAAGGCGCGTCAGGACTGGGCTGGATCGAGAGGA # Right flank : TCAATAGGACAATGGAGAACTTCTTTACAAGGCTGACCAGTGTACAACCGCGAAGCGGGACAGGTTGGACGAGAAATGGGCCAACGTGACCTTTTCGGAAACCAGATGGCCGCACTGGCTCGTCGAGGATAGGTCGTGAATACCATATCTCATTCGCAATCTGTTATTTTCTATTTGAGGATCTATCTGGATAAAAAATTTTTTTATTTGTGTAAGAAGGATCATTCAATTTATTTGTCGAATTCGCCGAGTAGTTCATGCTGCACCACCTTGAATGAAAGGAGTGCAAGGATGGTGGCCGTTCGGTCGATCCGTGTAAAGTTGGCGGTCGGGTCGCCGCAGTATCGCGATGTTCGGCGAGGTTTATGGAAGACGCACCAGGTGATGAACGACGGGGTACGGTATTACTGCGAATGGCTCGTGCTGATGCGCCAAGAACCTATTTTTGACGAAGACGAACATGGCTTGACCGTTGTGCGAAAATCCCGTGAGGAGATTCA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCCGCGGAGACGATCCGCGGCCCCATTGAAGC # Alternate repeat : GTTGCTCCGCGGAGAAGATCCGCGGCCCCATTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 52000-56000 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000016.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 52000 36 100.0 35 .................................... TGGATGATGGCGTTGTGCCAGGTCAGACCTACTAT 52071 36 100.0 38 .................................... GAGCTTGTCCACTTCAAGTGCTGTCTTGGGGATGCCCG 52145 36 100.0 36 .................................... TTGCTGACAGACTTCCACACACGAGGATGAGAGCCA 52217 36 100.0 36 .................................... TTCTTCCTCCTTTGCTGTTGGAGACGCTTCAGCCTC 52289 36 100.0 36 .................................... TTCTTCCTCCTTTGCTGTTGGAGACGCTTCAGCCTC 52361 36 100.0 36 .................................... TTCTTCCTCCTTTGCTGTTGGAGACGCTTCAGCCTC 52433 36 100.0 34 .................................... ACGGATGAATCAGAGCTTATCGAGGCCCAAGCGT 52503 36 100.0 35 .................................... TAGATTCCTGGGGCCGCGCTTGCCGCGATGATTAT 52574 36 100.0 36 .................................... CAAGTCAGAGATGAACATTCGCCCACTCAAACCGCA 52646 36 100.0 35 .................................... GCCAGGCCGTTGCCAAGGCTGTAGAGGCTGGGCAG 52717 36 100.0 37 .................................... ACACCAATGTTGGTTTGGCGGTTTATAACGGGGCCAC 52790 36 100.0 36 .................................... TGTTCATATCCTGTCACACCACCACGAATTGCGGCC 52862 36 100.0 36 .................................... CGGCCAAGAAACCACGCAGGGAAATGTACCGTCGTT 52934 36 100.0 36 .................................... ACCGGAGTTTAAGGAACGGGCTATGTTGGATTTTGC 53006 36 100.0 36 .................................... GCCTCTGTCTCCCGAGCGTCCTCGTCGTAGGTATTC 53078 36 100.0 35 .................................... GTATTGAATGCTCCAGCCGCTGGATATGGGACTGG 53149 36 100.0 36 .................................... CCTGGTCGTCTAGTTGGTCGTCCAAGTAAGACGGAA 53221 36 100.0 34 .................................... GTAAGACCTGTGTTGAGATTCTGCCATTCCTCAC 53291 36 100.0 39 .................................... ATGGGGAGGCACCTCCCGCAGGTTTAAGATGATACATCA 53366 36 100.0 35 .................................... AAGCAAACGCAATGGACCGATGAACACCCGGTGCT 53437 36 100.0 38 .................................... CCTCCAATTTGTCAAGAGGGGAACACCTGTTCGCCTCC 53511 36 100.0 36 .................................... TAACATACCGCGTTTACTTTGTCAACTGGTGCCTAA 53583 36 100.0 37 .................................... GCGAACGGAATTTTATCCGATTTGGTGAAGAGTGGTA 53656 36 100.0 37 .................................... TGTGCGGAGAAGATCGATGTCCGCATGGCGATATTGG 53729 36 100.0 35 .................................... AAGCAGGGGAAGGTCGTCAAAGTCGTACCAAAGGG 53800 36 100.0 36 .................................... TTGTTCAAATATAGCACGCGGGTACACAACTCGTGG 53872 36 100.0 36 .................................... TTGTTCAAATATAGCACGCGGGTACACAACTCGTGG 53944 36 100.0 36 .................................... TTGTTCAAATATAGCACGCGGGTACACAACTCGTGG 54016 36 100.0 36 .................................... TTGTTCAAATATAGCACGCGGGTACACAACTCGTGG 54088 36 100.0 35 .................................... TCTGAACAGCGGTCAGTGCTCAGATGGCCGGTGCC 54159 36 100.0 36 .................................... TTCCGGGCCATGTGCGGCGAGATGACACGCGTCCGC 54231 36 100.0 34 .................................... TATCGTGGGAGTTTGTATGAAGTAACACCCGCTT 54301 36 100.0 35 .................................... CTCTAGCTTTCTCCGTTCCTCTTCTGTGCGCCTCT 54372 36 100.0 38 .................................... TCGGGTATGGGGCTGCAAATCCCGAAACCGCAACGGTT 54446 36 100.0 37 .................................... ACGATGAGCCAATAGTACATCACGCGACACCCCATGC 54519 36 100.0 38 .................................... ACCGAGGACGTGAACCGAGCAACGGCGCAGGCGCAGGA 54593 36 100.0 36 .................................... AGCCGCTCCTTCGCCGCCTGCAACCTATGCCATGCC 54665 36 100.0 35 .................................... AGCCAATCTCGTTGATTTTCGTCCCTGCTGGCAAG 54736 36 100.0 38 .................................... TTTTGAGGAAAATCGACAAAACATATTGACAGTGTAAT 54810 36 100.0 36 .................................... GTTATGGTCAATCGACATGCAGCGGAAACCCTTGGT 54882 36 100.0 35 .................................... AGCTGCTTGACGGTGATCGTCACATCAATGTCCAC 54953 36 100.0 35 .................................... ACAAGAAAATCCATATCGATCACACCTTGAATATC 55024 36 100.0 36 .................................... ATGCGAGTGTATTTGCGGCCGCCCCTCCGGTGGCGC 55096 36 100.0 37 .................................... ACAGTGACTTGATTTTGGGCAGGCATTCCGTTTGCAA 55169 36 100.0 36 .................................... ATTACGATGCCGTTTAGACCTGCGGACGAATTGTTG 55241 36 100.0 36 .................................... ACGATCCGTGACTGAACCTGTGCACGACGCGGTAGT 55313 36 100.0 38 .................................... CAGCAGGACGGTGTCACCAAGATACAACACGCCAACAA 55387 36 100.0 36 .................................... AACTTGTCGCGTTCTTCTCCGGTGACAAAATCCATC 55459 36 100.0 35 .................................... AACGGTCTGCGGCGGCCTGCAGTTGTTGCGAATCC 55530 36 100.0 37 .................................... TTGGCAAAGAGTGTTTTGGACGGTGTTCACAGTTCTA 55603 36 100.0 36 .................................... TCCGGGCTGATCGGAGCCTCATGAGAATGCATCATT 55675 36 100.0 35 .................................... TCCAAGTCATCGGCCCTAAGCGGCGCTCTGCCTTC 55746 36 100.0 37 .................................... ACTTCTGCCAGCCACTCCACATCATGCGCGGTCCAGC 55819 36 97.2 38 ....................T............... CGGTGATATAGCTCATGTATCTACTTCCCCCATATTGA 55893 36 100.0 36 .................................... ACAAGAGCGTCGTTATCATGGTCAAGATGGCCGTGA 55965 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 56 36 100.0 36 GTCGGAACGATGAACAAGGGATCGAAGAAGTGGCAC # Left flank : GGCACGGTTACGCGAGACACTGTACGACCTCATTCATAAGGAAACCGATCAAGTCTTGTTTGCTCGCCTTGGCAGTGTGGAATCAGACGCGTTGGATCGTAATCTCACCGTGATTGGTCGCGAATACGATCACCTTGATTTGAAGAAACTGATTTTTTAACAACGATAGCTTGCGTGCGTACCGGCTGAACGTTACAATAAAGGCAGCCGGATAGGCGAGCCGCGACCTATAGGGTCGTAGGCTGAGCGGGACTTTGTGCCGACGCCTCAGAGACGAGGCATGTCCCGCGCTTCGATCCCTTGTTCAGCGTTCCGGCTTAACGAGCGCCTCGTCAGGGCAAATGCCCTGGGAGGTGCTCGCATCTTTGTCGCGGTGCGGATCGATGGCTTTGTATGGAGAGGGAAGAGGGGTGTATTCCCATGACTCACCGACTTGGTCAACGGGATGCTCGAAAGAAGGGCCTCAAGCTTGTGCGGATTGGGCATTGCGAGCACCCGCT # Right flank : CGAAGTTCCGTGAGCGTCAAATAGCGCACACCTGGCGTCAGTCCGTCTTCTGCGAGATGATCCCCTCCAGAATCCAGTCATGGAGGGATCACCGTGACAAAGGCCGAGTTGGAAGCACTTCGTAAGCTTTGGCGTGCCCGCGTGGCGGACTTTCGGGCCAGCGGGTTAACCGGCGCAGCCTGGTGTGCTGCGCATCAGGTCAAGGAACACCAGCTGTGGTATTGGGTCGGCAAGTTTAAGGCGGACACTGACCACGACGGCCGTCAACGTGAGCATGCTGAGCCGCGTTTCATCCCGGTGCGTGTGGAGGAATCCGCGCCTGAAGTGACGGACAAGCTGCTGTCCGTGCGCGTGGGTCCTGCTGTCATCGAGGTCACGCCCGGTTACGACACTGAACTGCTGCGCGATGTGGTGCGCACCCTGGCGTCGCTATGCTGAACATCGGTGCTGGACCGGGGGAGTTGCGCGTGTACCTGGCCTGCGGCAGCACGGATATGCGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAACGATGAACAAGGGATCGAAGAAGTGGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 8615-9825 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000034.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence034, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8615 36 88.9 38 ..C................T.T..........T... TCGCGCGGGTGGAGTTGGGCGCCCGGAGCGCGTCACTG 8689 36 97.2 38 ....................A............... GGAACTCCAGCACCTCATCCTGCTCGCGGGTGGCCGAG 8763 36 100.0 35 .................................... GTTGGGCGCGGATCTCTTCTGACGGCTTATCAGTC 8834 36 100.0 40 .................................... CGGGTCGTCCACCAGGTCCGCCAGCGGATACGGGTAAACC 8910 36 94.4 39 .......A............A............... TAAGCTGGCCAGTCTGCTCAAGCTGGTAAGCCCACTGTG 8985 36 97.2 38 ....................A............... CCCTGAGATTGTGATTCCGATATACGCTGGTCTAAAAA 9059 36 94.4 40 GG.................................. GTCGCTGTGCTGTTCCGGTCTTCGTGGGGACCGCTAGGAG 9135 36 100.0 39 .................................... AAGAGGCCAGCCCAACCACCAACCAGAACAAACGCAAAC 9210 36 100.0 40 .................................... GCGCGTCTCTAGCTCAGCGATTTTTTGCCACTCTTTTAAC 9286 36 100.0 36 .................................... GAAGGAACAACAGGATATAACGTTCGCAAACTTGAC 9358 36 100.0 36 .................................... CTCCGTAGGGTGTCCGGAGTGACTGGCGGTGTACTC 9430 36 100.0 35 .................................... TTGCGGACCATTTGCTGTCGATGGGGCTGGCCTCC 9501 36 100.0 35 .................................... GAGATATGGGCAGAGTGCCTTGGCAACGATCCGAC 9572 36 100.0 38 .................................... TGCTCAAACATGTACAAGTCTCCCTTGATCCTGAACTC 9646 36 100.0 37 .................................... GCTTATCAATCTGTGAAGGAGTTTGAGCTATCAAAAC 9719 36 100.0 35 .................................... CGAGGCGTTCTACCGGCTGTACGACCAAAGCAGCC 9790 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 17 36 98.4 38 CTTCAATGGGGCCGCGGACAGCGTCCGCGGAGCAAC # Left flank : CGGCTGTCTGGAGGTGTACGCGTCGCTCACGAGTTGCCTGCGCCGCTATCAGGCTCGCCGCGGCGAGCGGGTGGATGCGGACACGTACTTCGCGCGCTTGGCGGCGGGCGACGCGGACGCGGTGGCGGCGATGCGGGAGACGGGCGAGTACCTGGGCATCGGCATCACGAACATCGTCCACGGCCTGAATCCGGAGCGCGTGATTCTCGGCAATCGCCTGGCCGACGGCGGGGACGTGCTCCTTGCCGCGGTGGAACGGGTGCTGATGACGCGCAGCTTCGCCCAGCCGTACTTTCGGACGACCGTCAGCCTGGGCCGGCTCGGCCGTGACGCGTGTGCGATTGGCGCGGCGTCGCTCGCGCTGCAGGCGTACTTCGCGTTGCCGCGGACGGAGTGAGCAGTCGGCGACGGGGCCCGTGGGGACGGGGGTTTGGAAACGGGGTGCGGCTACGGCACGTCCCCCAGCCGCCTGTTTCTCAGGGGGCTCGGGCGCGGCGCGC # Right flank : CCCTTCGTCCTTGTGCCTAGATACGGCGCGGGCTTTGCGCCTTTTTCCGCGAACCTCCTCGTGGGAGGGGGGTCACACCATCAATTCCACGCCCCCATTGTACCTCGCTCTCCTCGAAAAATCCAGATTTATCGCGGGTTTCCGCAGATCCGCGAACCCCCCGGGTTTTACCCATCACTCGGGGTTCGCGCAACTTACCTGCCCCTGCCGGGCTAAGCCCCATATACCTTCGGCGTACGCCGTGCATATCCACTCAATTCGTCACCGTCAGTTTGACGTCGGAATGGTTGATCCACTGGATCAGTGACCAGTTGCTGGTGAACACGCCTTCCGGGAAGATGTACGTCCCCGGCTGGGTGGGCGTCCACGTCCACGTCTCGGTGATGGTCTGTCCAGGCGCGAGGCTCGCGCTGGGCGCATTCTGTGCGACCCACTGCCAGTTGTCGGTAAAGACATACTGTACCAAGAGACCGTTGGTCAGATACCCGGTCGGCGCGGTC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCAATGGGGCCGCGGACAGCGTCCGCGGAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.30,-14.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 2624-2883 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000008.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 2624 38 100.0 38 ...................................... GCCGACACAAAAAGAGCCTCCCCAACCGGAGAGGCAAC 2700 38 100.0 35 ...................................... CGTTATCGGGTTTGACGCCATTATCAACGGGGTAA 2773 38 100.0 35 ...................................... CGGACCTTGATGCGCTGGCAAGCGAGATTGAGGAA 2846 38 94.7 0 ....A...........A..................... | ========== ====== ====== ====== ====================================== ====================================== ================== 4 38 98.7 36 GTTGCTCCGCGGAGAACATCCGCGGCCCCATTGAAGCG # Left flank : CCCGGCTGGCGCGCCTGGTGTTGCGGCGGGAAGGCGGGTTTTGCCGTTTGCGTGTGAGTCATGAGGTTGCCTCCTTTGTCAAAAGAGCGCCGGCACAGGCGGGTCTGCTGATGACCACCTGCTGGCCTCCACATCCCTCTGATGGCCTCCACTTCCCTGCGGCCACCTTGGTTCGGTGCAGCCCATGCATGCACAATTTGATTGTGCTTCAGCCATACTCCCACCATGCGTGACACGTCAACCATACGTCGTATGAAGGGATATGCTTCGTATGAAGGGAACGCGTATGACCGAAACGGATCGCGAAGTCACGCGAACCCTGAGTGATGGCCAAACCCCGGGGGTTTCGCGGAATGCTGGAAATACGCGAGATGTCTGGATTTTTTCCCGAAGAGGGTGCTACAATGAGAGCGTCTGCAACGGAAATCGTACTGGTGTTGTCCAGGGGTTCGCGGAAAAAGGCTGGAAAAGCACGTCAGGCCTGGGCTGGATTCGGTGGA # Right flank : GTAGGCCGAGGACCATGTCCGCGGCCCACGGCCTCACAGCAAAAGCGGGTGGCGACGCCCCGCACGCCAACGGCCGGTTGCCCGGTCGCCCACCGGTTGCACGCCGGCCGCCCGCCTACACCTCCAGCACCATCCGCGGCGACAGACGCGGGACGGGCGCGCCGAACGCTTCGCTCGCTTCCCGCAACAACTGATCGACGTCACCGTAGCGGGGATAGTGGGTCAACACCAGCCGCTTGGCGCCAGCCCGGCGCGCCAGCTCACCTGCCTGCCGCGAGGTGAGATGTCCTGCGCGCAACGCCGCCTCCTCCTGGCCGATGAACATGCTCGCCTCGCAGATGAACAGGTCTGCACCGGCCGCAAACGCCTCGAGGGGCGGGCACACCGAAGTGTCGGCGGAGAACACGAACGTCCGGCCGCCCTGCACCATCTTCACCGCCAGGCAGTACACCGGGTGAACCGTCTCCGCGAACGACACGTCCATCCCGGCAATGGACAGC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCTCCGCGGAGAACATCCGCGGCCCCATTGAAGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-13.20,-13.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2955-1689 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000076.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence076, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2954 35 91.7 38 .C.-.A.............................. ATTGTATCGTGGACAAGCTGACGAGAGCGCCCGAACCA C [2947] 2880 36 100.0 35 .................................... ATACTGCATTCACCGGAGGCGCCACTTGGTTCGAC 2809 36 100.0 34 .................................... ATCTACCCGATTCTTTTGCCGAGCAGTTCGATGG 2739 36 100.0 38 .................................... ATATGATATGGACAAGCAAGGAGGTGATAGCGTGGCGA 2665 36 100.0 37 .................................... ATTTCGTCTTCTACGGGATCCAGACCTGTCGTTTCAA 2592 36 100.0 39 .................................... ACGCGGACAAAGCCGACGGGCAAGCCGCACAGCGCCCTG 2517 36 100.0 39 .................................... TAGCATTCCTGCTTGTCCATACTGCCCATATATAGCCGC 2442 36 100.0 35 .................................... AGGATAACTGCTCCACGCGCGTCGCCTTTATTGAT 2371 36 100.0 34 .................................... TATGGGGTGCCCGCGCTATCGAAAGTGATACTAG 2301 36 100.0 37 .................................... ATGAGCGCGATGAGAAGCCCCAGAAGCGCAGTGCCGT 2228 36 100.0 36 .................................... ATTAGCTGGGCAGACACATTGATCGTCACGACTCTG 2156 36 100.0 36 .................................... TTCATGGGGTCAGAAAGTAGTATACAGCCCATATTT 2084 36 100.0 35 .................................... TTTTGCGGTGTTGATTTATCGTGTAGCTCGTCCGC 2013 36 100.0 37 .................................... ATGGAACACCCGATTACCATGTAGTTTATGGTGTGTT 1940 36 100.0 36 .................................... ATCTCGCAATGAACGCCCGTCAATTCTTCGCTTCAA 1868 36 100.0 37 .................................... TTAAGCTACGGTGGCATACATAAGCGCAGCCGCCCCC 1795 36 100.0 35 .................................... TTTTGCGGTGTTGATTTATCGTGTAGCTCGTCCGC 1724 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 18 36 99.5 36 GTGATCGAAGCTGTGATGCCGAAAGGCGTTGAGCAC # Left flank : ATCCTCCCATCTCCGCCACACAATTTGAGAAACCCCGCCGACAACGATGACAAATAAAGCG # Right flank : CTGGGATGCTCGCCCTTGAAATACTTACGTACGATGATGTGAACCAAGCTTTGATGCCAACGGGTTCATGGGGGCAATACAGCCCGCGAACTGGAGCCGTGTTCGCGCCGTATGGTGCTCGCGGGCTGTCGTCCGTTGGCTCATGGCCATGTTGGTGACTCGTTCCTACTTGCTACTTGCCATCCAACTCAGGTTTCAATGGATCAACCTCGTCAGCCGCTTATGCCGCCAGACCAGGCGGTAGTACGCGTACTGCAGCCCCAGGTTGGCGACGAACCCCGCGCAGTAGCCCACCCACACCCCGTCAATGCCGATGCGGCCGGAGAGCACGAACGCGACCGGGATCTCGATGACCCAAATGGCCAGAATCGACAAGAGGGTGGGCCAGAACACAATGCCGCTCGACCGCATGATGCCGGAGAGCACCGCCGCGTTCCCAAAGACAAGGTAGCTCCAGAGCGTGATCATCAACAGCTCGTACGCGATGTCCAGGGTGTGCC # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCGAAGCTGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 15411-13184 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMOY01000039.1 Alicyclobacillus cellulosilyticus strain JCM 18487 sequence039, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 15410 37 97.3 36 ...................................T. TCGGCGTGGCCGTCCTGGTACGCCGGCGCCTTCAAG 15337 37 94.6 37 .....................A.A............. AACCGCACATCCCCGCGCGGGCGCACCGGGATCTGGT 15263 37 94.6 35 A......................A............. GCAATCGCGTCAAGACGATACAGAGGGAGTATCCG 15191 37 97.3 37 .......................A............. GAAAAAGATATCCGGGCACAGTGCAGACAGTGGCGAT 15117 37 100.0 35 ..................................... TCCCGCACAACCTTCACAGTCGGTGTATCGGGAAC 15045 37 97.3 38 ..............................T...... GCAATTCTTTGTCTGGGATATATATCCACTTTTCAGGC 14970 37 100.0 36 ..................................... CGTGGTTCTGATGGTAGGCCGTACATTGAGCCTCAT 14897 37 100.0 37 ..................................... TTCAACACCTAACGGCTTCGTCATGGACGGCCAAGGT 14823 37 100.0 36 ..................................... GGGTCGTGTAAGATATGCGACAGTCCGTTCCGTGAA 14750 37 100.0 34 ..................................... TACTATAGGACTACTGCTGTAGCAGAGATAGAAA 14679 37 100.0 36 ..................................... GGGTCGTGTAAGATATGCGACAGTCCGTTCCGTGAA 14606 37 100.0 34 ..................................... TACTATAGGACTACTGCTGTAGCAGAGATAGAAA 14535 37 100.0 36 ..................................... GGGTCGTGTAAGATATGCGACAGTCCGTTCCGTGAA 14462 37 100.0 34 ..................................... TACTATAGGACTACTGCTGTAGCAGAGATAGAAA 14391 37 100.0 36 ..................................... GGGTCGTGTAAGATATGCGACAGTCCGTTCCGTGAA 14318 37 100.0 34 ..................................... TACTATAGGACTACTGCTGTAGCAGAGATAGAAA 14247 37 97.3 36 .......................A............. ATGGCTTCCGGTTCGATTTCGGAGCGTCCAACTCCA 14174 37 97.3 37 .......................A............. GAGACAGCTGGCAGGTGATCCGATCCTATATAGATCG 14100 37 97.3 34 .......................A............. ACGATGCGCAGAGAAAGGCAATCAACACCATTTT 14029 37 97.3 35 .......................A............. GGTGGGGAATCAAGAAACAGGACGCCGAGGCAGCA 13957 37 97.3 38 .......................A............. TTCGGGCTTACCTGGAGCCTCGAGCTGTACCAGCAGGC 13882 37 97.3 35 .......................A............. GGTGGGGAATCAAGAAACAGGACGCCGAGGCAGCA 13810 37 97.3 38 .......................A............. TTCGGGCTTACCTGGAGCCTCGAGCTGTACCAGCAGGC 13735 37 97.3 37 .......................A............. CTGGAGGTGGAGCGCGTTGCTCATTAAGATCGGAGAC 13661 37 97.3 38 .......................A............. GAGGACGGTAAGTACGGGCCCGCCACTGTCGCTGCCGT 13586 37 100.0 38 ..................................... TGAGCAAGTACAGGAGTACTCTAACGAAGCCCATAAAA 13511 37 100.0 34 ..................................... TGTACAGCGTGTCTTTGGTCTTGCCAGTCATCAA 13440 37 100.0 38 ..................................... TGAGCAAGTACAGGAGTACTCTAACGAAGCCCATAAAA 13365 37 100.0 35 ..................................... GGAGGGAACACAAGATGGCAAGCTCACTCATCAAG 13293 37 100.0 36 ..................................... TTCATCGCCTGCGCGCGACACGTCCGGCGACGTGAA 13220 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 31 37 98.6 36 GCTTCAATGGGGCCGCGGATCGCGTCCGCGGATCAAC # Left flank : ACTGGATTGTCGAACCGGATGAGCGAATCATCAACGTCTATCTGCATGACGGGGAAACGCTGCGCTGGACGGCGGAGTACAAGCCGGGCGACAAGCTGAGTCCGTCGCTGTTTCCGGAGTTGGTGATGGATGTCGCGGCCGTGTTCACGTGAAACAGGCATCGTCGTCGCGGGCGGCGTCGTGATGGATGGCGGAACGCACGAGTTTTTGGTAAACATTCTACCCGTCTTCACAGACGCTTCACGGTCCTTCCACGTTACGTCCCTATACTCGACGTTGCCAAGCATATCCTGACGCGAAACGCAGGGAGGGATTCCGGTGAAGCGAGCTTTCCAGAAACCCCTGGCCGTCCTCACCGGCACCGTGGTGGCTGGCGCCGCGGCGGTGACCGGCTTCGGCTGGTGGACGCGTGCCAACTCGAGTGTCACACATGCGGCCCTGTTCATGTTGTGTCGCTGAGACGGTCTTGGATGTGGAAATGCCAGGACCGCGTAGACGAC # Right flank : TCCGCCACATCTGGCTCAGTCGTGACGCGGGATTTCGACCGTTTTCCGCGAACCCCCCGGAACGGGGTTGGCGCCGCCTCGGATGGACGCCTTCATTGTACTCCGGGTGTGGCAAAAAATCCAGAGATGTCGCGGGGTTCCGCGGATCCGCGAAACCCCGGGGTTTTCGTCATCACTCGGGGTTCGCGGATCCCCGTCGACCCTGGGTACGACCGGGCAGGTGCAACCTTCGTGCAACACGTTTTGCACTGAGTGATCATTCACGCGAATATTTCGTCCAGACGAATCTCCAGCTCTGGCAGCACCCCGACCGGGACCGTGTCGTCTTCGCTGAAGACGGTTGGGAACAGTTGCTGGTCCGCCAACCGATAGACTTCTACAATCTGGTTATACGGGTCGACCAGCCCATACTCCCGCACCCCGGCGGCCATGTACGCGCGCAGCTTCACCGTCTTATCCTTGTACGCCGTCGCGGGGGACAACACCTCCATCACCATGTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.87, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGGGGCCGCGGATCGCGTCCGCGGATCAAC # Alternate repeat : GCTTCAATGGGGCCGCGGATCGCATCCGCGGATCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA //