Array 1 284495-283612 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTP010000004.1 Listeria booriae strain FSL L7-1761 NODE_4_length_505396_cov_42.838447, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 284494 30 100.0 36 .............................. AGAAGATAAACATTGACCTTGATTTAAAATGAGGAG 284428 30 100.0 37 .............................. ATGCTCGCTTATATGGCGATGGCTTTATGAGTATAGG 284361 30 96.7 35 ...C.......................... GAGTATACAAGTAATGTGAAGATAGCAAAGTCTTG 284296 30 100.0 35 .............................. GTAGCATTAAAGATTGTAAGCAGTGCATGGGAATA 284231 30 100.0 36 .............................. ACTGTTTTGCTATGCGGAAACACGTTTAAGCTACTA 284165 30 100.0 37 .............................. TCATGAACACTGCCGTGTACTCCTCGAAGGTGCGTCT 284098 30 100.0 37 .............................. ACGTTCGAAGGCTTCTTGGCCAGTCATCCATTTTTCC 284031 30 100.0 36 .............................. CGCGCATATCCACGTACCATACGACTAGCCGTTAAA 283965 30 100.0 36 .............................. ATTTTTAGCAGTGTATCGCCTTTATATAGTGCGTAT 283899 30 96.7 35 .................A............ TAAATGTTCTTTAATTCCTCGAATAAAACAACGAT 283834 30 96.7 35 .................A............ TACAGTAGCTTTAAAAAAGTAATACAGCAATCTAA 283769 30 96.7 34 .................A............ CAATCCACATCATTATTTTGTTCTTGCTCTTTTA 283705 30 100.0 34 .............................. ATCTTTCCTTAGTTAGGATCGGTGCTGCCGTTCG 283641 30 80.0 0 .........C.....C.A.....CA...C. | ========== ====== ====== ====== ============================== ===================================== ================== 14 30 97.6 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCGCTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACTTCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAACAATGGGGGCATCGACAGATTTTTGTTATGCATTGGTACTAAAGGGTTTAAACCTGTTTTCGGAGTTTGGATTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : CGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTCAGTCTACCAAGCAATGTTCGTAGCCAGTATACTCTACTTTCCAGCTCTCACAAAAAATCCTCACGATAATCCTTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCCCGTTTTATTATGGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACTTCATAATACGTCAATGCTTCTGTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCGATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAA # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 66783-67275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTP010000007.1 Listeria booriae strain FSL L7-1761 NODE_7_length_117362_cov_36.375146, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 66783 30 100.0 35 .............................. ACTTCTTTAATCCTTTTAAATTGGTTAACAACTTT 66848 30 100.0 36 .............................. CGTTCCCACAAGCAGCTAGCAACAAAATCAAACTTA 66914 30 100.0 36 .............................. GCAAGGCGAAGTCATCAAGAACACTAAGGAAGCGTA 66980 30 100.0 39 .............................. GATGCTGTAGAGGTTGAGCTTAAGACTGTAACAAAAACT 67049 30 96.7 36 ..................C........... CTGCTTCATGGTAAGCCTGAGCGTGCGAATTATAGT 67115 30 96.7 36 ........................A..... CTGGTTATTTCTGAGTAAAGTTGTTCATCGATTTTT 67181 30 100.0 35 .............................. TCCCCAATAGTGATCTTCCCCACCATTCGAATTTT 67246 30 86.7 0 ..................C.T...A...T. | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 97.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GACGCTGAACGCAATATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTTCTAATTGCCGTCGGATTCGCCGGCACAACCAAATCAGTATTCGAAGACTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTTTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCACAGGGGGAGAATGGATTAGGATGGTTTTCGAGAGGTTGAAAAAAATAAACGAGTGCAAAAAAGATAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGTGTAGGAGTTAGGAGGGTACCT # Right flank : TCTCAAAGAAAGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAAGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGAAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATCAATTATTATCCAAACAAGAGATATCTGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCGTAAAATACCTAAATAAAAGATGAATCACTATTAAAAACAGCACACTAACCATGAAAAGACCACTCGATACCCAGTCCATAAAAAGGGATACAAATACTAAAATTACGAGAAC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 220819-221376 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASTP010000002.1 Listeria booriae strain FSL L7-1761 NODE_2_length_751295_cov_40.005012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 220819 30 100.0 37 .............................. TCTTTTTTATTTAATTCTTTTGGGAATATTCCTAATT 220886 30 100.0 36 .............................. TCCTGTAACACCTTCTTACGCCTGCACAGTTCCTGC 220952 30 100.0 36 .............................. TCCTACTGATTTCTTGTTAAGAATAACTCGATAATA 221018 30 100.0 36 .............................. ATCGACAATATGGACATTGCAAGTAATAATTTAAAA 221084 30 100.0 35 .............................. TCCAGAGTTATGCAGTCCCTCGGTGAATTTGTGGG 221149 30 96.7 36 .G............................ CTGGGTAATATCCTTTGGAAGCAACGACCTGTTGGA 221215 30 96.7 36 .............C................ CAATTAATTTCAGCGGCACTTAAATTAATAATAACC 221281 30 100.0 37 .............................. ATAGCGTATTTGGTGCTGGAGTTCCTGTTAGGCCAAC 221348 29 86.7 0 .................A..-...C..G.. | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 97.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : ATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGTCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTTTGTGGGGGAAAGAGGGGATGGTAAGTGGTGTTTGGAAAGCGGGGATAAAAATCTGTCGACCGTCGGTAGTGTGGAATTTAGGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTACAAGGGATTGAGCCTTTTTCGAAGTTCAGGTTATAAGGTTAGAGAGTGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATCGGGTACCT # Right flank : TTAGATTGCCCACAGATGCAGTGTTTCTATCCATTTTTTACAGAAGCAATTATCATTTAACAGCTTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAACCTTGCGAAACAAATTGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //