Array 1 52012-48243 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000024.1 Nodosilinea sp. P-1105 NODE_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================================== ================== 52011 34 100.0 39 .................................. GTACTTATAAGCTGGCCCTATCAAACCCTCAGCTACACA 51938 34 100.0 34 .................................. GTAAGACTAGAGCCGAAGAATCCGCTTACTACGC 51870 34 100.0 47 .................................. TGCTGAACGGTACCCTACGTCGGGCGTTCGACTTCGACCTATTCACG 51789 34 100.0 35 .................................. AATTCTCCAGCGATCCGGTTTATCTCTATTTCGTT 51720 34 100.0 36 .................................. TGGAGGACTATGTTGCTTGCACCATGTTCTGTGAGA 51650 34 100.0 38 .................................. CGCTAGTAGCTCGATACTTGCCGCGATTCCAAGGCCCT 51578 34 100.0 43 .................................. AACAAAGACTCTGTAGGTTGAGTGTGGTGTATCTGCAAAGTAG 51501 34 100.0 38 .................................. AATGGAGTTCCCTAAGCGGGTCGCCACCCTCAAATACT 51429 34 100.0 36 .................................. TTGAGCAAGCTGGCCTAGCCTAATGCCGAAACCTAG 51359 34 100.0 40 .................................. GTTGGTGGTGGAGGATTGTGATTGTTAGGGATGTTGCCGT 51285 34 100.0 46 .................................. ACTTGGCGCTCGCCGTGGGTGTCGCAGTTGGGGACCACGATTTGGG 51205 34 100.0 38 .................................. AGTCACCATCTGGGACGGTAACACCTCGCTTGACCGCA 51133 34 100.0 43 .................................. TCACGTCTGTCTTCACCGCCAACACCCCCGGCGCATTCGGCGT 51056 34 100.0 43 .................................. ATGGAGGTCAGCACCTCTAGCAATGGCAGCGACTGGGCTACGT 50979 34 100.0 38 .................................. CTTTGAGCTTAGGGTTTTCATTACTTCGTAGCCTTCCC 50907 34 100.0 41 .................................. ATCGCCTGGGCTAGGGCGGTGGGGAGGTTAGGCATTAGTAA 50832 34 100.0 36 .................................. TATCGTAAGGCGGGTCAAGCCGGTCTATCCCTAGCA 50762 34 100.0 35 .................................. TCGCCCCGCTACTCTCCCTGATGCCGTCCTTGCCC 50693 34 100.0 50 .................................. TTTCCGCCCCTACAAAGAAACCTATCCCCAGCGCTATCCCCTGATGCAGG 50609 34 100.0 38 .................................. GAAGTCGGTTTCAATAGTAATGCAGTACTATAGGGTAA 50537 34 100.0 44 .................................. AGCCAGCGTAGGGGGGTGGTCATGGGTCACTCGCCTGTCAAATT 50459 34 100.0 39 .................................. TAAAGCGCTGGGTCAAGACCAGGCTGGGGTCAGGGTCAA 50386 34 100.0 42 .................................. ATTTGGGGTCAGTCGAGTCGATGAACACTTAGGGCATTGCAT 50310 34 100.0 39 .................................. TTCAATGGCGCTCCACACCCCAGAGAACTCGCCCTCTAT 50237 34 100.0 39 .................................. TACCACCCGGCCGCCGGATTATCAGAGTCATCCTCTAAG 50164 34 100.0 35 .................................. CATCGGTGTTAGGCATATTGAATTCATCAGCCGCA 50095 34 100.0 37 .................................. GTGATGTCGGGCTGTAATGGTTCACGTCGGATTGATT 50024 34 100.0 40 .................................. AGGCGATTAAGTGTAGGTTTAGTGTCGTCCTTGTCCGACT 49950 34 100.0 40 .................................. TCGCTCCGGGTCCGATTCGCGTCGGGCACGGCCAAGAACA 49876 34 100.0 39 .................................. TCTAGGCTTCGACTTGGGACCCGTCGGGTCTATGTCAGG 49803 34 100.0 37 .................................. ATGGCTGAGTCGATTTTAACAGATAAAATGCCTTCTA 49732 34 100.0 37 .................................. AATAGTTCATTTTCGATATCAATACCTGGTGGTAAAA 49661 34 100.0 38 .................................. CAAGGTAAAGGGACAACCTATTGTGCCTGATACGTCAG 49589 34 100.0 40 .................................. TATCATGGTGCCAGATTCTTCTAATTGAGTCGCTGAGAGT 49515 34 100.0 35 .................................. CTATTTCTCGGGTAACTCGACCAAACCAGTTCACC 49446 34 100.0 40 .................................. GTGGTAGACGTGGTCCTCGACTTGTAAGTCGCCCCAGAAT 49372 34 100.0 37 .................................. TCAGCGAGAATGGCGAAGAAGCCTACGCAAAAGACGT 49301 34 100.0 36 .................................. CGCCGAGACGACCTACGGTGGGAATGATGATTTCCT 49231 34 100.0 35 .................................. GGACTAACGCGGGAGGAGTGCCACCTCATACAACT 49162 34 100.0 36 .................................. CATCAGCGCGTCGTTGAGCGATTTGGATGTCTCGTT 49092 34 100.0 40 .................................. ATAAACACGTTCGATTTCATCTACGCTGCCCGTTGAAGAA 49018 34 100.0 41 .................................. AATATCGGCAGCTGTAAACAAAGGTGGTGGGAATTCGCACA 48943 34 100.0 36 .................................. TTCAGCTCTGCCTTCGCTAGCATCCGAGCTAGCGTA 48873 34 100.0 46 .................................. ATAATACTTACCAGTTTTTCCGTGAGACTTTCCTCGGAGGATTCAT 48793 34 100.0 35 .................................. CCAATCAGGGTGTGTTATAATGGAGTTAGTTTAGT 48724 34 100.0 43 .................................. CTCTGAGTCACAATGTAGGGTTGCGTGAATAAACGCGACTGCT 48647 34 97.1 38 ..................T............... GTTTTTTAGCCCGTTGCCATACTTGCCAGAAGGCATTG 48575 34 100.0 44 .................................. TATAATAGGCATATAGCATTTTGCCAGTGTCATATTTGACGAAA 48497 34 100.0 39 .................................. GAACTGGTTCTTAAACCATATCTTGGCTTCAGTGTGTAA 48424 34 97.1 38 ..................T............... CCGGTGCAGGGGGATGGCATTGCGGATCAGTTGGCGCT 48352 34 100.0 42 .................................. TTTTCTATCTCTACCCAGTGACACAAAGCACCCCGCGCCGCT 48276 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================================== ================== 52 34 99.9 39 CTTTCAAACCACTTCCCCGTAAGGGGACGGAAAC # Left flank : CTACGACATCCCCGACAATCGCCGTCGCTATCGGCTCTCTAAGCTGCTAGAGGGCCACGGGCGACGGGTGCAGGAGAGTGTCTTTGAGTGCTTTTTAACCCAATCTGAGATGGAGCGGCTCTATCAGCAGATCGCCGGGCGGCTCAACCATGAGGAGGATAATGTGCGGATTTACTGGATCCCGCCAAAGGCAATGGCCAAGACAAAAACGATTGGCAGCCCTAAACCCGAGCCACCGCCGTCGTCATATATTTATTAAGGGACGCTCGACAGAATCTGAGCTTGTGAGTAAAGTAGGGTAATAAACCCACGCAGGTGGTGTGTACCTCGAAAACCTAATAGTTTCATTAACCTCCGTGGATAGACTAGCCTGTAGGGGTTTTAGGCTGTTCGTCAGATACTTTTTTGTGGTTTATGGGGTAAAACTATGGCAGGAAATGTACCTCCGTGGTTTCACCCCTCTAGAGTCCTCCCTGCATAAGGTTTTCAGAGCAGGGGGC # Right flank : ACATACAACGAAAAGATCCCAGGGTTCTTAAAGAACCCTGGGATCTGGTTACAGAGAGCTTTACCCCATCCCTCACAAGGGGGCGCTGCTAAGATTATTCGCTACGATCATCCTTCTCCCTCACCGCTCGCCGCGCCAGCTTGCTGTAGGTCTTTGCCGTCTCATAGGGAATGTCCAGATCCACCGCGATCGCCTGCAATGAGTCCCCCAGCTCCCGCCGCGCTAAAATCGTCGCCCAGGTTTCCGCCGAGTCTTGGGCACGGTGGCCGCCGGTACGCTTCTTCTGGGCTACAAAAAAGGTCGTGAGTTCATCAATGCGATCGGCCAGCAGTTTTTGGGCCGCTGGTTTTTCCTGGGGGGCTACCTGGCTCAGGTGCCAGCCCAGGCGGGTTTGGCCCAGGCCAAAGGTGGTCTTGTGCCCCGTACCGCAATAGGGGGCATAGTGGCCCAGGGTATAGAACAACTGCACATACTCCGGCCTATCGTCAGCCTTGGCACCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAACCACTTCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 57928-55532 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000024.1 Nodosilinea sp. P-1105 NODE_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 57927 35 100.0 39 ................................... TGAGATGACCGATATCCTTGAAAGATTGACCCAATGATG 57853 35 100.0 34 ................................... GATGAAGTTAATTGAAGGCGGAGTGAAATTTACA 57784 35 100.0 43 ................................... CATCCCTGAAGTCCTCGATGGAAGCAACATTAGGAATGAAGAG 57706 35 100.0 37 ................................... TGGATGACATCAACTGGAGCTGAGGGTGGATCTCCTA 57634 35 100.0 39 ................................... GGGTAATATCGAACGTTAATACTCCTACGATGTCTACTC 57560 35 100.0 36 ................................... CTTTTCTGTAAACACGCTGTGAGATTTGATCCCATT 57489 35 100.0 40 ................................... GAAGTAGTTGTTAACCACTCCGCATGTGAAGTAACTAGAG 57414 35 100.0 38 ................................... TTCGAGACGAGCGCTTTGGGCGCTGTATTCAAAGAAGG 57341 35 100.0 37 ................................... CGGGAGCTGACTAGTTGACTAATCTCGGTTTCATCGG 57269 35 100.0 34 ................................... CAGAAGCGTCAGGGGACAGACCAGCGACCGCAAA 57200 35 100.0 36 ................................... TATCTTGGGTCGTCCAAGGGGACGAGAAAGCTTCGG 57129 35 100.0 37 ................................... TTAGGAGAACTCGCGAGGTGTTACCCCGTAGTTGCCC 57057 35 100.0 37 ................................... GCGACGGGGATAGTCTTATAAAAAACTACCCATAGAA 56985 35 100.0 39 ................................... GATGATGTCGAACTTAGAGTAACGCTTTTTGTTCAGAGG 56911 35 100.0 39 ................................... CTACTATCTACCGCATAGCTAAGAACTAGCCCCCAACTC 56837 35 100.0 34 ................................... ACTTGTAGACCAGATTGATCTACTTTGAGGTAAG 56768 35 100.0 33 ................................... TTCGGCATGGACCCGAGAAACTCTATCGGCCAA 56700 35 100.0 35 ................................... TGTAAGTAGATAAAACTCTTCCCTTTCACTGAAAT 56630 35 100.0 36 ................................... GTTTTAAGTAATACGCTCCCTCCCCGCAAGGAGTGA 56559 35 100.0 35 ................................... AAAAACTAACCTTTCTTGCTGGGAGTGGTGCTATT 56489 35 100.0 35 ................................... GATTGAGACCCCACAAACGTGCTATTGAAAGCACC 56419 35 100.0 35 ................................... TAGGTCTATGTGGGCTCAGCTGAGCAGCATCAATG 56349 35 100.0 37 ................................... TTGGACCACCATACCAATCATTAGCAGAATACAAGTG 56277 35 100.0 35 ................................... ACTGCGAGAGCAGCTTCTTCGTGCTCCAATTCCAG 56207 35 100.0 37 ................................... TCTATCTTTATTACCTCTCTCGGGATTGGGGGGGCTC 56135 35 100.0 34 ................................... AATGTTTGCACCGCGCACAGTAAACATGATCCCT 56066 35 100.0 40 ................................... ATAATGGGGGTAGACTAAGGGTGGGATGGAGCTTTCCACC 55991 35 100.0 36 ................................... TCTTGCACCATTTCAATTACCCCATGGAATTCGCTC 55920 35 100.0 39 ................................... ACTAACTACTCCGCAATCCAGCGGAAGTTATGCGGAAGC 55846 35 100.0 35 ................................... GTGTGCCTGCTGGTACTCAGTGACACCTTGCGCGT 55776 35 100.0 33 ................................... CTGAGTCGACCGTAACTAGAGAGCCAGAAATGC 55708 35 100.0 34 ................................... CTACACCTACGTGAAAGGCGATGTATCCAGGCAA 55639 35 100.0 38 ................................... TATTCCCAAGATTGCTGTCTCTCTTTAGGTGTGCGGGG 55566 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 34 35 100.0 37 GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Left flank : TTTTGAATGGTTTGTCAACAATGAGAAGCGGGCAAAACTCGCCCTACCCGCTCTAGCTGACAGTCGTCCTGCCAGCCTTCCCTTGCATCCATAACGGGAAAAACCAGGATCGCCATACAAAAGAGGTTGATAACTGATACATCAGCGTCTCAAAAGTTGCCTTTGTGTAAACGTTTTTGCGACGGTATAGACATCACTAGAGTAGCGCTTGATACAGAAGCTCTTTTTTTGTCAAAATGTTGCAGAACGTTTCGTTTCTATGGCCAAATCTCTAGAAATCGGCTATTCTTAACCTAAAGCTCCCGTTTTTGAGGGGGTCTTCCGATCCTTGAAAACCGCATAGTCTCGTTGACCCCCTCAGATGCCTTTCCGTACAAGGGTTTCAGCCCTGTCTGAGGGTGGTTTATTGACAGCAATTCTCGATTATTTGACCCCTTAGCCGACCCCCTCAGATTTGGGGTGTTGAAAGCCTTACAAGTCAAGGCTTTCAGCGCTAGGGG # Right flank : GTAATTAAAAAACGAAGAGAGAAAAACGAAAATAGAAAATTCGTCGTCTACCTTAATTGCGTTGGCAGAACCCTTTCGTTCGTCGTTCTTCCTTTTTCTCTCTTTCTCCCCTGGGGGACGGAAACGTAATAAAAAAACGAAGAGAGAAAAACGAAAATAGAAAACTCTCTGCCCACTTCGAGCATGTAGGCCAATTCTTTTCGTTCTTCCTTTTTCGTTCTTACCCAAAAACGCCCGGTTTGTCGTGTTAGTTGGCGAAATGGGTGACAAGGTAGATTAAACAATTGAGCCTGTGTGATGGAAACATTTTTCGTTAGCTACACCTCCCACGATCGCACCTGGGCCGAGTGGATCGCCTGGACGCTAGAAGAAGCGGGCCATTCCGTCATCATTCAAGACTGGGATTTCCGCCCTGGTGGTAACTTTGTGCTCAATATGCAGCGGGCCATGCAAAAGAGTGATCGCACCATTGCCGTCCTGTCTCCCCACTTTTTGCAGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA // Array 3 72157-70402 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000024.1 Nodosilinea sp. P-1105 NODE_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 72156 35 100.0 33 ................................... TCGAAAGTGAACCCTTCAGCATTGTGGAATAAA 72088 35 100.0 33 ................................... GGGAGCACCCTCCTTCAACGAGGGCCTCCTCTT 72020 35 100.0 36 ................................... GTCGCCCCCGGAGGGGGGGGCATCGTGAACCGAATA 71949 35 100.0 37 ................................... TTGAAGTCTTTTTGCTAAGTGGCTCAAATAGGGTAAT 71877 35 100.0 35 ................................... TATGGTCTCCATTCTTTGGATAAATGATTGCAACT 71807 35 100.0 37 ................................... TGGAATGTATCGGAATTAAAGCCGTTCAAAGTGAACG 71735 35 100.0 36 ................................... TTAAAAACCTAGCCAAAGTAGCTTTCTGGTAACCAA 71664 35 100.0 40 ................................... TCATTACTCTCACACTCGACAACCTTATACGAGCCATCTG 71589 35 100.0 40 ................................... CCAAAGTAGCTTTCTGGTAACCAATGAGTACCTGTTGAAA 71514 35 100.0 38 ................................... GCTTATACATCGTCTCGCGAATCATCATTTGCTCATAC 71441 35 100.0 35 ................................... TTTGTGGTTAGCCTTTACTTTACTGTTATGCGCCT 71371 35 100.0 36 ................................... AAGTACAACTGATGATCCATTGGATCAAAGAACCAT 71300 35 100.0 40 ................................... GATCAACTGGACATCTTTAGCTCATATTGAACTGGTAAAG 71225 35 100.0 37 ................................... TCTTCCTTCCTTCTTTTGTTGAAGAAAGTATCCCAGA 71153 35 100.0 39 ................................... TGCCCTCGACGAATACCAGGTGTACCATGAATAGCTGTG 71079 35 100.0 35 ................................... TCTCCGTAATCCTCAAACTCATATCTATTGACATC 71009 35 100.0 36 ................................... CTAAGGCTTGCGCGAGCGCAACGGTGAAACCAAGTC 70938 35 100.0 36 ................................... TTCTGAGGAAGTCCTAATTGAAGGACCTTAGCGATC 70867 35 100.0 34 ................................... AATCAAAGAAACTCTAACTAACTTAGTCATTTGG 70798 35 100.0 40 ................................... CGATAGAACGTGACATAAACAAAAGTCTCCTAAGACTTGT 70723 35 100.0 37 ................................... GCGAGTGTTTGAATGCCCACCCTGAAGGTTCAGGAAG 70651 35 100.0 36 ................................... ATCAACTTTGAAATTCTTCCAAGGAAGAATCCAAAG 70580 35 97.1 35 ..C................................ ACCAGATTGTGATGCATCACTGTAACCTTGTACGA 70510 34 97.1 40 ..............-.................... CATCCTCCCGTGTTGACATTCAGGTCTCCATTTTCGTCTA 70436 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 25 35 99.8 37 GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Left flank : AGTGAAGCGCCATGGCCTGCTCCACTGGGTAGAGTTGCCGCCCTTTGAGAAGCACAGCATTGGGAGAAGCAACATAAAGGCCAAAATTTCTGACTGTGACCTGATTGTGTTGATTACGGGCTACATGCGGCATAAGCAGACCGATAGCGTTGTGCGACTGAGGAAGCTAGGGGCGCTATCGGGGGATGTTTTGCTGGTGAGCTGCCGAGGCAGGAGTGGGGTGGTACGAGAAATTTTGACCCACATCGGCCAGAAGAATTGTTAACGTTAGCATTGAGAGGTTGACGCTTTGAGTTTGAACGGCTAACCTGAGGGGGTCTGGCGAACCTTGAAAACCCCATAGTCTCGTTGCCCCCCTCAGATGCCGCTCCGTACAAGGGTTTCAGCCCTGTTGGCAGAGGGGTTATTGACATGAATTCTCAATTATTTGACCTTAGATTAGACCCCCTCAGATTTGGGGTGTTGAAAGCCTTGCCCTGCAAGGGTTCTAGATCGAGGGG # Right flank : CGAACTAAAGAACGAAGATGGAAAAACGAAAATAGAAAATTTGTGGTCAACACGCTTCATCTTGGCCAAATGCCCTTCGTTTTTCCTTTTTCCTTTTTCCTTCTTTCTCCCCTGGGGGACGGAAACCGAACTAAAGAACGTAGGGCTTGCCCTTCCCGGAGGGTAGATGGAAAAACGAAAATAGAAAATTTGTGGTCAACATCGAGCATGTCGGCAGTCCCTTTTCGTTCTTCTTTCTTCCTTTTTCATTCTTTCTTCCTCCCCCTGGGTACTCTAGGCAAGCTGAGCTACCTGCTAAAAATGCCTGTTAGCGAAAATTCTCAACCGGAAGACTTGCGGCAGCGAACGAAGACATTTGCCCTACGGATCATCAAGCTTTATGGCTCATTGCCGAAAAGCACCGAGGCTCAGGTTTTGGGTAAACAGCTTCTACGGAGTGGTACCTCCGTAGGGGCACATTATCGAGAAGCCGTGCGATCGCGCTCCAAAGCTGAGTACAT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCTCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 80936-82915 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000001.1 Nodosilinea sp. P-1105 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 80936 37 100.0 35 ..................................... AATCAAACTCAACCAACGCGCCGCCGCAGTAGCAG 81008 37 100.0 34 ..................................... AAGCGTATGCGGGATATTTATTTTCAGCAACACC 81079 37 100.0 36 ..................................... GGCAATAGCCCTATGCAGTAGCGCATCTCAGCGATC 81152 37 100.0 34 ..................................... ATGTAAGATTTTCCGATTTGCGTTATGAGCATAG 81223 37 100.0 36 ..................................... CGGCGATGTGACCGTTGTCATCTGCAAAACGGCCAA 81296 37 100.0 35 ..................................... AAGGTTGGCAGAGTTAGCGGGCATCGACATCGACC 81368 37 100.0 34 ..................................... AGTTTAATTTCGCCAAAACGAACATTCCCATTCC 81439 37 100.0 35 ..................................... AGCCAGTAGTTTGCTGCCGACGATACGGATCAACT 81511 37 100.0 37 ..................................... CGGAATGTACTCGATCGCGCCAGTGACCGGGTTTAGT 81585 37 100.0 35 ..................................... TCCAGCAGTATCAAAATCAGGGTCACTGGCATCAA 81657 37 100.0 36 ..................................... AGTTTGAACTATTAACTGATGATCATTTTCTCTCTA 81730 37 100.0 34 ..................................... AAAACGCCGCTCTACCACAGCCGCCCACAACGCA 81801 37 100.0 34 ..................................... CGGTCCCGGTGAAATAAATGTGCTGGTTAGCGAT 81872 37 100.0 33 ..................................... TGGGTCGATGGTAAAAACGATGTGGCCTGATTC 81942 37 100.0 36 ..................................... CTCATTATCAAGCTGTACAAATTGATTCCTCTCAAG 82015 37 100.0 35 ..................................... TAGGCCGTGGGCCAGGACGGTGCCCGTCGGTGATG 82087 37 100.0 34 ..................................... CTTGCCAAGCCGTTGCTGTAGCTCCGGTGGTAGC 82158 37 100.0 38 ..................................... TCCAGACTTGACGGCTTTGCTATTTCATTCGGTGCGCT 82233 37 97.3 35 ........A............................ CGGTTGCCAAACATTCCCCTTACGGTGCTTTTAAG 82305 37 97.3 33 ........A............................ CAAGTAGCTCCTGGCCCTGGGAGTTTCCTTTAT 82375 37 97.3 35 ........A............................ GTTGGGTGATGGGTCGAACGGGGATAGGCAGGATG 82447 37 100.0 35 ..................................... AAAGGCGTCCGAGGCAGCCCGTTGCTCCTGCTCAA 82519 37 100.0 35 ..................................... GGTGTACTCGTCCCCCAGCTCATCCGATCGCAGGA 82591 37 100.0 35 ..................................... GAACCAATAGCGTAGGATCTACCGTCATCAACCCT 82663 37 100.0 35 ..................................... CCGCCAGCAGAGGGTACCCCGGCATGGGCGTGGGG 82735 37 100.0 35 ..................................... TTTTCAGTAGTTTCATTGCAATGGCGATCGCCCTG 82807 37 100.0 35 ..................................... CAGCACTTATCGCGCTACACGTCTCCCTTCGGATG 82879 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 28 37 99.7 35 GCGCCAAACCCCCCCAAACCCTCTCAGGGATTGAAAC # Left flank : ACGTCGCACTAAGATCCACAAGATCCTCTCGTCCTATGGGCAGTGGATGCAGTTCAGTGTGTTTGAATGCAGCTTGACGCCGACGCAATACACTAAGTTACGGAATCGCCTCAACAAGTTGATCAAGGCTGAGGAAGATAGCATTCGATTTTACTTTCTCTGTGAATGCTGCCAGCAAAAGGTGGAGCGCATTGGCGGCGAGGCGGTGCGGGATGAGACGGTGTTTTTTGCCTGATGGCTTGGCGCGAGCAGGGGGGTGTGCTGGGGCGATCGCGCTTCGTATTGGCCAAAGTGCTGGTTAATGGTGGGTTTGGAGACTTTTGTACTGAGTTGGGGTTCGCGCAATGGTTCTAGAGTTTGCTCTGAGGCTGTTTGAGGAGTTTAGGGTTTGTCTTGGAGGCTGTTTTTCTGGGGTAGGGATGCTAGGATTGGAGGGTTCGCGCTTTTGGACCTCGAAAACTAAATATAGCAAGGCTTTCAGAGGGCCGCCGCAGTAGCAG # Right flank : CTGGATACATAGGCCCCATCGTGAGGCTGAGCGTAGTAAGGTAGATGTGTTGTTTCCACATGCCTAGGGGTGTGCCGGATAGAGGGGATATCCCTCAGCCCAAACGCAAGAGAGAAATGAGCGAGAACTATAATCCTGATACCGTTGCCGGTTTCCAGAACTGGCCAAAGCCAGAACAAAAGAAGGACTACGGTGGCTTCAGAATTTTATCGGTATGCCTTTTTGTGCTTCTGTTTTTTACTTGGTGGGAGATGCTAGAGCAGCGAGAAAGGGCCAGCGAACTGGAGGATCTGCTTTGGGCCTACGACGAAATCTTGCAGCCTACAGAGCCAGAACTTGATGCGATCTACGATCAGGTTTTCCGTATGGAGAACATGCGCAGAGATGCCCATCACCCAGAGTCACCCAGAGGGCCAGGACCATTCTGAATTTATGTAGGCGCCAAAACCCTCCAAACCCCCTCAGGGATTGAAACTTCTGAATATGAAAGCGCAGTAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGCCAAACCCCCCCAAACCCTCTCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [11,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : NA // Array 1 917-4178 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000110.1 Nodosilinea sp. P-1105 NODE_110, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================================================================== ================== 917 36 100.0 42 .................................... AAGAAGGTGATTCTATGTACTTGCCTAATGAAGTAGTTGATT 995 36 100.0 39 .................................... CTTAGTAGCATCATAGGGGATACTAAATTGATAGAGTTT 1070 36 100.0 40 .................................... CATCAGGGTGGAGAGCCCCGCGATCGCTACCTTGAATAGG 1146 36 100.0 42 .................................... GCAGTAGATTGTCTACGGCTACAGGCTCCCCATGGATGCCAG 1224 36 100.0 41 .................................... TCTTGAGGCTTACCTTGCTGGCAATATCAACTACATGGTCT 1301 36 100.0 45 .................................... CATGTTTAAGAGTTTCCATTTTTACGCCCTCCATCGGCGACAGGT 1382 36 100.0 36 .................................... TTTGAGAACTTTTGTATTGGAGTTCAATGGCATAAA 1454 36 100.0 42 .................................... CATTACCTTTTGTTTAACATTAGAGATTGCCTTGCCTGTAGG 1532 36 100.0 39 .................................... AAGGAATACTCCATGACTTACTACGGCATACTTTCAGAA 1607 36 100.0 38 .................................... TTGCCAGATTGTCCACGCTGCATTATTCAGCTTACTGG 1681 36 100.0 45 .................................... GTGAAGCCCATACATCCTAGGACTAAGCTACCGTTTTGTCGGCTT 1762 36 100.0 35 .................................... CAGAGCAGTAATAGCGATTGAGTGGGTATCATAGA 1833 36 100.0 38 .................................... TAAGCCTAGATAAAATAAGATATAAACCCTTGAGTCAA 1907 36 100.0 37 .................................... GGGTCTGGAATCGTGGCCTAGGTTTGCTGAAAGAATT 1980 36 100.0 38 .................................... AGTGAGATGGAGTCAATGCAACGTGACATTGTGAGTAT 2054 36 100.0 34 .................................... CCACATCCCGGTTGATACGGCGACCTCTTCGGGT 2124 36 100.0 39 .................................... TTTTCTTGTTAATTAGTGTTAAAGCAGCCTTTTGCTCTA 2199 36 100.0 41 .................................... AATAGGTTGGGCTGTACCTAGAGACGTAAAAACTAACGATG 2276 36 100.0 39 .................................... CAGAACCCACGCGACTATGCCAACTACATTGGCGAGATG 2351 36 100.0 41 .................................... AGGTTAAAGTTTTCGGTATGAAACATGTGTTGTCCTCGTGG 2428 36 100.0 40 .................................... TTTGAGTCGGGCCACTAAACGGTTGATTAGAGGTGCCTAC 2504 36 100.0 40 .................................... GATTCACCATATAGACGTAGACCCGTCTAATAACGACGCC 2580 36 100.0 37 .................................... AGCTACTGGCTCACGTAGTTGACCCTAGCCACGAGGA 2653 36 100.0 42 .................................... TAGAATCGCATCCATCTGGTTGAAGCTGTACTCGTCCAGGTA 2731 36 100.0 38 .................................... TCCATGATGGCGGGCACAAACCAGGGGCTATTCGCGGG 2805 36 100.0 43 .................................... TTGGCAACATAGGTGTGCTCTTTGTAAGGTGCATCAGCTCCTG 2884 36 100.0 38 .................................... AGCCGTAATAGGTGATTTACTTGGCACTTTTTCAGATG 2958 36 100.0 37 .................................... ACTATACGTGTGCCTACAGGCATCGACTGAACTTCTA 3031 36 100.0 37 .................................... CGTAGCGCTTAGGTGTCAGCGACTTGAATGTAGCCTC 3104 36 100.0 40 .................................... CCAGGGCTGGCGTTAGCATCAACTCGGTCAAGGATGGCCT 3180 36 100.0 38 .................................... CAGCGTTGTCTAGCTGGAAATCAACTCCACCACCACAG 3254 36 100.0 37 .................................... GGCAATTGGCATTGCTTGCCAGGCTGGCACACCGTAA 3327 36 100.0 37 .................................... AAAGACAGCCGAGTATATGGAGCGGATTGGATTCTGA 3400 36 100.0 44 .................................... ATTTTCCATCTAAACGAATGGGTGTAGCGGTCATCCCAAAATGC 3480 36 100.0 38 .................................... TGTAAACCGGGATCAGTTCATCCTGAAGTTCTTTCAAA 3554 36 100.0 39 .................................... TTACCCTAGATTCGCAGTCTAACCGCCATTGGGTAGTAG 3629 36 100.0 37 .................................... TTCTGCCTGTCTCCCTGCTAACTCTGTAGGTAAATCT 3702 36 100.0 43 .................................... CTGATGAATCTGATATCGATGTAAAATCTTTGGATGAGCTAAA 3781 36 100.0 39 .................................... CAGGTAACTGTAAACAAGTATAAAGCATTCATGAGATTA 3856 36 100.0 37 .................................... GCTAACAGCAGGCGGAACACAGGAAAGTACCAAAAGG 3929 36 100.0 38 .................................... ACATCTATCTTAACGCCTGCCTTAGTCATAAGCATGCA 4003 36 100.0 102 .................................... ACTTTGGAGAACGGAGAGCGGAGAGCGGAAAAACGAGAACTTTGGTGATTTCTTATAAGGCTACTGAATGCCAGCTTTCCGTCCTCCTGTTTCCGCCCTCAT 4141 36 86.1 0 ...TT.A........................A..G. | AT [4150] ========== ====== ====== ====== ==================================== ====================================================================================================== ================== 43 36 99.7 41 CCCGACCGAATGGGTTAATTCGGAATAGTTGGAAAC # Left flank : ACCTTTTTTGAGGACGGTCTGATGCTGGTACTGATTACCTACGATATTCCTGATAATCGGCGTCGCACTAAATTGGCGACGTTCTTGGAAGGCTATGGCCGACGGGTGCAGCGCAGTGTGTTTGAATGTTTTCTCGACCAGACTGAAATGCAAGATTTGTATCAGCGCATTCAACGCCGGGTGAAGGCGGAGGAGGATAGTGTACGGTTTTATTGGCTGACGCCCCAGTCGGTGGCGAAAAGTCTGGTGATTGGCGGCGAGCCAATTACCCCTCCCCCAAGTGTCTATATTGTTTGAATGAAGGCTATCGACGCACCTCTACTAATGGCTATAACCCCCATTTTATGGTGGAGGTGTGTCGATGGCTGGCGCTGTAAGGGTTTGGGGCACTGGCCACAGTGGCAAGGTGCTGATTTTTCGCCCTATGGGGTAAGCTATTGGCAGGTGCGTCGATTGGCAGGGCTGAAACCCGCTCTGGGTAAGGCCCCCAGAGACGAACT # Right flank : CCTCATCATGTCCATCTGTTAAACTGCAAACAGAAGCAGAAGAGGCATGACTGTCTATGCCACAACCATCAAAACAGCCACAACCATACAGAAACCAGATCTTCCAAGAAGGGTTTTATCTGCTGTTCTTCGGACTCTGTACCCTGCTAATCGTGCGCGTAGTCTTACTGGGTGAGGATCCGGCTGAATTGTGGGATTTCTCAGGCTTGTTCCTAGCCACGTCGCTTTATCTCACCGTTCGGCTTACCTTGGCAAAATCTATGCATCAAGAGTACGAAAAAGCGGGGAGATTTTCATTGCGCAGATTATTATTTCGCTCGTTTATAGCCAGCGTATTTTTTTCTGCACTGATGATACTGTTTGGCGCATGGTCAATCAGCACCCTGGATGATGTGTTCAGAGTAATTGTAGGTGGTTCCATCTACTTCGCATTAATGATCGCAATACCGCTGATCTCACATCAACTATCAAAACGGTGAACCAGAGCTGCGTCATCAGCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCGACCGAATGGGTTAATTCGGAATAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1589-1056 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000111.1 Nodosilinea sp. P-1105 NODE_111, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 1588 35 100.0 40 ................................... CTTCAACCATCATCTTCTTCGATCCAAAAAATCCAGAAGG 1513 35 100.0 36 ................................... GGCAGCAGTCCTCCTGCTTTACAAGCACGACCTCAC 1442 35 100.0 36 ................................... CTGTATCTTGGAGCCCCGGGAAGGTGAGTACTACTA 1371 35 100.0 35 ................................... GATGCCCCTAATAGAAGGCATCCCTCTAAGCCAAA 1301 35 100.0 35 ................................... TAGGGTACTGTGAAGGAAAAATCCTCCCAAGGAGG 1231 35 100.0 35 ................................... GAGAAAATTCTTGGGCAACTTGAGTTCGTTGACTT 1161 35 100.0 36 ................................... CCCGCCCTCGTCAATATCTAGCTACTGGAGGGCCTA 1090 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 8 35 100.0 36 GTTTCCATTCAATTAATTTCCCAGCGAGTGGGAAG # Left flank : CCCGGCCCAACGGCAAAGTTTGGAAGCTGCCCATCAGCTTCTGAAGCAAGGGTGGGGTCTTTACCTGGGAAAAGAGGAGGAGCAACAGCAGGAACGGCTGGGCAACATCGACCTGGTTCCAGTTGTCGTTCGTTTCTTCTACCCCGTTGCCACTTTCATTCTTGAAGGGGAACGCCGCCACCCTACCCAAGTCGTTAAAAAAGGCCATGGGTCTGATCAGGCGTTTGTGGATTTCACCATCAAACTGCCAGAGCGTTCCCTACAAGAATTTGGTCGCTGGGTAAACCGATTTATGCATCTGGCCAAGATTCTCACCCCAGATGCCTTAGCTAAAAAGCATTATCAAAACGCCCTGACGTTAGCAAGTCGTTACCAGGACTGAAGAAGGCAGAAGGCAGAAGGCAGAAATCGGACAAATTCTGGGGAGAAGAACCGAACACTTTAGTGCGTGGCAATATCCCCTTCATCCTTCTGCCTTTATCCTTCTGCCTTGGTTTACC # Right flank : GGTCGGCCTCTAGGAGGCCCACCACGCCTGCATTCTACACCACCATTTTCGTCGGGGTCCACCCCAACCGCCAACTAATGACATTCGCTCGCAACAACGTCCTGTGGAAAACCCTTGAAACCCTTGTGTATCAATGGCCCCGCTGGGTTCAACGAGAGAATGCGGGTTTTGGCGATCGGCAGACCCCGAGAAGAAACAGAGCCTGAGGGAGAACAGATTATCTAACGGCGAAAAAAGCATTTTAATCATCGCTGATGCCCAAAAATGGGATTTTGTGTCTTCCTTTACCTAAGGCTTCCTCGACAGCAGCCTGCTCAGCAACCGTTTAGGACTTCTGGTTAAAGGATTATAGTCCTCATGGGAGATCACCTTGATGGGCACCACCTGATCGCCATCGTCACGGCACAGTAGCCGATAGCGTCGAGTAACCGGAATTCTAATTACATCGCGCATCATCTCTAGCCGCTTGCCCGACAACTGCCAGTAGTGAGTTCCTTGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAATTAATTTCCCAGCGAGTGGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 3091-4123 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000128.1 Nodosilinea sp. P-1105 NODE_128, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 3091 35 100.0 34 ................................... ACCTGGAGCGTGCTGTTGCCAGGGGTGTACCCGG 3160 35 100.0 38 ................................... CAGCGGTACCGGCCCCAAAGAGAGCCGATTGGTTGGTG 3233 35 100.0 36 ................................... CAAAACGAGTTAAACGAGGCATAAGATAAGTCTCCT 3304 35 100.0 34 ................................... ATCCCGGCATACCGGGCCGTGACCACCAAGAAGT 3373 35 100.0 37 ................................... CCGAGTAACCCTGTTCCAAGAGAGAATGTTAATAAAG 3445 35 100.0 36 ................................... CCGCAATCAAGCGGAGAGGTCATGGTAACCGCCCAA 3516 35 100.0 35 ................................... CATCGTTTTCATTGTAGAGGTTTCCTTCTCCTCGG 3586 35 100.0 38 ................................... TGCAAGTTCTTTTCCTATATCTACGGGGCGATACTCAT 3659 35 100.0 35 ................................... GTTGAGCTTAGCGAGCTGCGAAGCCTGTAGGGGTA 3729 35 100.0 39 ................................... ATATCGTAACGCCGATCCACTGAAATATGGGTGGTGCGA 3803 35 100.0 33 ................................... AGGAATTGGAATTCCGCTGGAAAACAGTAGATA 3871 35 100.0 35 ................................... TGCGCTAGCCCCCGTTTGGACCTCCAGACTCTCAA 3941 35 100.0 41 ................................... GTATACCCAGGTATCAATGTCTGTGTTAAAGGGTTTCCCCT 4017 35 100.0 37 ................................... TTCACAAGGTTTTTAATCTCGTTTATAACCTCAACGG 4089 35 94.3 0 ....................A........A..... | ========== ====== ====== ====== =================================== ========================================= ================== 15 35 99.6 36 GTTCAAATCCCATTACCCCGCAAGGGGACGGAAAC # Left flank : GAGCAAGGGGCTAGAGTTCCCGGTGGTGTTCATCCCTGGGGTGGGCTACCTGCCCAACAGGTATGGGGAAGTGACTGATGAGGCCCGGTTGCTCTATGTGGCCATGACCAGGGCGATCGAGGTGCTGGTGTTGAGTTGCGATCGCAGGTCGGTGTTTGCTGAGCGGCTAGAGGGGGCGTTGGGGAAGGTGGCTTAATGTTCTGGGGGAAATGGCATGATTGGCGCAAATATTCAATTTTTGTGAAGAGGACCAATCTGAGTTGAATATCCTAAAATACGAAGCTAATATGCTTATAAAGCTCCCGTTTCTGAGGGGGTCTGCCGAACCTCGAAAACCGCATTATCTCGTTGACCCCCCCAGATGCCGCTCCGTACAAGGGTTTCAGCCCTGTTGGCAGAGGGGTTATTGACAGTAATTCTCAGTTATTTGGCCTCTGATTAGACCCCCCCAGATTTGGGGTGTTGAAAGCCTTGCTTTGTAAAGGTTTCAGATTGAGGGG # Right flank : CCCCTAGCCAGAACAGATGTAGGGCAACCCGTGACGTGGGCTCTAGGTGTCGATGACCAGACGGCAACCTGGTGACGGCTCCCGCCTGGCCTGCTCATCCCCGGTGGTTAGCTGAATTCTTGACGGTTTTGGGCACTCGGGTTGAACATGCCCAACTAGCGGCAGTCTAGGCTGTGGAGAGCTCAATCCCCAGACTTACACCGCACCCGGCAGCTATCACAATGGCATCCATCGGGTAGGTCGCAACGTCAAAAACCCTAGACAATTCTGTACACCACGGCTCCGTCACTCTCTCGGTTGCCAGACCTCAGCAGGTCTTGATGCTCCATCTCAAGCAAGGTGCCGCGCAGTTCCTCCGGGCTTTTGCCAGTCTTGATAACACAATCGGCCATGGTCACTTCGCCTTTCTCCTGGGCAAATCTGAGCAAGGTAACCGTGAGATCGCTGGCGTTCTCTTCCTGTCCAGCGCTAATGCCCAGTTCTTTAGCCGCTCCTCTGGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCAAATCCCATTACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.70,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 4397-488 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000132.1 Nodosilinea sp. P-1105 NODE_132, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 4396 36 100.0 37 .................................... AAGTTAGCGTCGGGTAGGTAGTCATTATCTCATCGTA 4323 36 100.0 41 .................................... ATGGAATGAAGGTAACGGTAATACTTATCCTTAGGAGTAAA 4246 36 100.0 36 .................................... CAGGTTTAAGCGGTGTTAGCGGTGCCGAAATTGGTT 4174 36 100.0 40 .................................... CCGCTGCCAATCGCCGCTACGAATGGGTAGGACAAATGAT 4098 36 100.0 42 .................................... AATCTCTTGATTGCGACTCCCACATGGGGAATGTCGGTTTCA 4020 36 100.0 41 .................................... TCGGTTAAAGTCCCGTTTGCGTTCTCCTCTTCACAAATTAT 3943 36 100.0 40 .................................... ATATAATTTAGGCGGTTGGTGTCAGCATCATACTGGTATA 3867 36 100.0 41 .................................... ATTCCTACGATTTTACACATCTCAACGATTTGCTCGCGAGT 3790 36 100.0 46 .................................... ATGATAAACACCTCGCGATTCGGGCCTTTGCCGCCGACTGCTATAG 3708 36 100.0 40 .................................... TCCTTAGAGATATGTTTGCAAGCCACATGCAAACAGCTAT 3632 36 100.0 42 .................................... AATCTATTTCGTGATGGACGGGCGCAAAGCGATATACATCGG 3554 36 100.0 39 .................................... GCCGGTGTATCCGTTGTCCTGTATCTGTTGCCGCCCAAA 3479 36 100.0 37 .................................... AATACTTTGGTTGAGCCCAAAAACAAAACAGCTAGGA 3406 36 100.0 43 .................................... CATCGTTCCAGATTGCTTCGTCGGTGTAGCCATTCCACACAGG 3327 36 100.0 40 .................................... TGTGGCGTTAGGATCTTGACTCATTGAGCTAACCTTTGTT 3251 36 100.0 41 .................................... TGTCTCAATTGTGTTTTTCTTTTCTGGAATATGTTTAGAGA 3174 36 100.0 42 .................................... ACGTCGGGCTCGCGTTCTTCGTGCGTGTCAGCTAGCTCGCGC 3096 36 100.0 35 .................................... TCAGACACATCGAAGCGCTGACGAATAAATTCCCG 3025 36 100.0 40 .................................... ATACATACTCTCGTAAATCGTGCTCAACTTGCTCATACAA 2949 36 100.0 43 .................................... GAGCATGAAGTTGCTCATGCGTGTTTGAAGCTCGAACATCCGT 2870 36 100.0 41 .................................... GTGCAAGAACTGGAGCAGCGCTGGGTAGCGGCTGGGGTGAT 2793 36 100.0 45 .................................... ACTTGCCCTTGGCTCGCCTGGACGCAATCACAGAAAGTGCGTCTT 2712 36 100.0 40 .................................... ATTGTCTCATTAGAATTCCGAAAGGCTACTTGGTTACCAG 2636 36 100.0 39 .................................... TGGGTTGGATATCCGATTTCGTTAGCTGTTTAACCTTAG 2561 36 100.0 39 .................................... CTGCTTTAACCTCATCCAAAGAGGCATAAGGCTTGTCAG 2486 36 100.0 35 .................................... TTCAGGATTACAACGCTGGCCTAACCTCTGATGAG 2415 36 100.0 38 .................................... TTGCTCTGGTGGGGCCGTTTAAGGACTATGTAATCCCC 2341 36 100.0 39 .................................... TCCTATTTGGTGAATGTGTGCTGTCAAGTTAGATCTATA 2266 36 100.0 39 .................................... TGGCTTCATATAAAATGAATTGATAATCACTAATACCTA 2191 36 100.0 42 .................................... TTACTTGACCAACGGGTAAATAGGAGATCGGTCAAATCGTCA 2113 36 100.0 38 .................................... ACCAGGTTCTAGGCATACTGTCATCCCCCAGGTCAGCC 2039 36 100.0 41 .................................... TTGAGGCCCCAGCGCACCCAAATTGCAGATGTTACAAAATA 1962 36 100.0 38 .................................... GATTTTACTGGAGTTCTTAACTGGGGAAACCCTTTTAA 1888 36 100.0 39 .................................... ACGTAATCCCCTTCGCCGTCGATCACATCATCGGCAATC 1813 36 100.0 35 .................................... TTTCCTCAAGCTTCCCGGATAGGCTGATCAAGTAA 1742 36 100.0 39 .................................... TTGGCTCCTACCAACGCTCTATCGAGCAAAATCATGGCG 1667 36 100.0 37 .................................... CAACAGATCGCCACGGCCTGCCAGCGGGGCCAGACTG 1594 36 100.0 40 .................................... TTTTCTTGTCTTGTGGTTCCGGCTCCAGACGTTGACTTTT 1518 36 100.0 45 .................................... TCTTAGAACGTTGCGCCCCAGGTCGAGCTGAGCGAGCTGCGTCAA 1437 36 100.0 40 .................................... CTTCACGCTCAAAGTATGTAACCCACTTTAATGTAGGCTC 1361 36 100.0 38 .................................... AAAACGGTCATCAGCCAAGAAACGAACATTGGTCAGAG 1287 36 100.0 38 .................................... CTAGAAATTGCTTGGTTCGAAAGAAAAGCTGTAGAAGA 1213 36 100.0 38 .................................... GCTAAAGAGTTTGGTAAGGCGGCTATTTCAGTATTTAG 1139 36 100.0 40 .................................... CAATGCCAGGGCTCGACGGTCTGTGGATTTCGCTATAAAT 1063 36 100.0 45 .................................... TAGCCTGAACGTCACGCATTGAACAGGTTGAGCTTATCCAAACCT 982 36 100.0 38 .................................... AGGGCTCTTGATTCGTTGTGGTCGTTCTTAGAGCTCAT 908 36 100.0 42 .................................... ACGAACACCCGTCAATGTGTTTCCCAGCCCTGGTGCATTCCA 830 36 91.7 46 ..............................T...TG GAAACTTGTGCCCAGTACATATGGTTAGGTAGATCTAATTCTAAAG 748 36 100.0 38 .................................... TGCACTAGCTTGTAAGATGCAGGAAAACGATCGCGCTA 674 36 100.0 40 .................................... CCTAAGTAAACCTTGGCAATATTGACATCCTTTCCGTTGA 598 36 100.0 39 .................................... CGTAATCAACAGACCCCAGTACGTTCTGTCCTGGCTCTG 523 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 52 36 99.8 40 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : CCGCAGAGCTTTTCTTTACAAGTATCTATTGATACACGACAATTAACCCCTTAACGTCCCGCCTTGTGGAGTGCTCCCTTAGGTGCACAATAAGAGG # Right flank : CACTATTAATAAAATTAAAATAGAATATTAGGAATAGAAAAAAAGGACTAAAAAATTAGTAATTTAATGTGGGCAATCTACCCTAAAGAACCCCAACAACGCATCCCCGCCGCCCGCTGCTCCAGGTTCAGGTAGCTGGTCAACGACGCCAAGCTAGCATGGCCCGTAATCGCCATGATCTGCCGCAGGGGCACCCCTTTAAACTCAAACAGGTCCAAGGCCCGTCGCACCCTAGCACCCAACCTCAACCCCACCGAATCTCCTCAAACCGCTTGGGATTCAGCTTGGTATATCGAACCGTGTGCTCAATATTGCGGTGCCCCAACCAGTCCTGAATCAGTCGAGTGTCTAGCCCCTGGTTAGCGAGATAGTAACCACAGGCATGGCGCAGCATGTGGGGATGTACCGGCACTTAACGGGTGACAACGTACCTAGAGAGCTTGCTGCATCAGGGATAGAGCATAGAAACCTCGCTGAAAATAGAGTTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [85.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 71-468 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000139.1 Nodosilinea sp. P-1105 NODE_139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 71 35 82.9 34 G.GCTCC............................ CACCCCCACCACGGGGGAAGTTTACTGTATAATT 140 35 100.0 39 ................................... TGCACCTGTTAAACTGATGGATCTCCTCCACCTCCCCGC 214 35 100.0 39 ................................... TGCACCTGTTAAACTGATGGATCTCCTCCACCTCCCCGC 288 35 100.0 36 ................................... GCAAAGTTTTCTTGCCGTCAGCAGATACCTTTTGGT 359 35 100.0 40 ................................... CACCAGCTCGCGAAGAGCGGAGTATGGATTGGGGACAAAG 434 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 6 35 97.1 38 CTCAAAACTTCTCCGGAAGTTGAATTAATGGAAAC # Left flank : CCGCAGAGCTTTTCTTTACAAGTATCTATTGATACACGACAATTAACCCCTTAACGTCCCGCCTTGTGGAG # Right flank : CGGTTTGGAGGACGGAAAACGGAGGACGGAGGACGGAAAGCATTGATGGCTAGTCACTGGCTGCATCAAAAGCTCAAGATCCCAGGGTTCTTGGGCTGTTTGGCCACGTTTTTTGGGGCATCCAGGGACAGAACCCTGGGATCTGAACCGGCGTTCTAGTCACTGGCCGCATCAAAAATTCCTTTTCTAAAGCTCTCCGCTCTCCGCTCTCCAGTCTCCGCCCTTTCACCGGCTTCTCCGGAAGTTGAATTGTAAAAATTCAGGGGGTTATGCAGCCCAATGGGTTTTAGGCTCTTCAGAGGCCTGAGGCCGTAGGTCAGGAGGCTGCTGTTCGAACCGTGCGGCCTGCATGGCAACGATCCAACGCATGCTCTAGGGAGTCCCCCACCGGACGAATAATTAAGCTATCACCCTGACGCTCAATCTCATACTCCACATCCAACCGACCGAACTGAAGCTCCTTAGGGATGCGCACAGCCTGGGAATTGCCACTTTTTTTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAACTTCTCCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 115-1614 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000147.1 Nodosilinea sp. P-1105 NODE_147, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 115 36 100.0 37 .................................... GGAAATCTGTTTTTGACAATCTTGAGGTTGCTTGTTA 188 36 100.0 36 .................................... TAGAGTTACAGGTGGCCAGATGTTTAATCTAGAGGG 260 36 100.0 42 .................................... AAAAGCAGCTTAAAGCGTTACCAGATTTTGATTCTAGGATAA 338 36 100.0 38 .................................... ACCTAAGTGTAACCTTTGCATACTGTCAGATATTTTAC 412 36 100.0 37 .................................... TAAGACGGCGGTGCTAGTGTTTGGGGCACCACCCTGC 485 36 100.0 34 .................................... GTAGCGGCATGACCATTGGCATCCAAAACGAAAT 555 36 100.0 33 .................................... AAAAATGGATAGAAACATTGAGATTGAATCAAT 624 36 100.0 38 .................................... TAAAATGAAGGAGATTGATATTCCAAACCCCCTCTAAT 698 36 100.0 40 .................................... CCCTTACGGCTAAGGCCCCTAAAGGCCATCCATTGGCCGG 774 36 100.0 38 .................................... AAAACACAACGAGAGGTATAATCCTATGTCTAATTATG 848 36 100.0 40 .................................... CTGAAGCCGTTGACGTGACGTTTGAGCGGTACAACCGTGC 924 36 100.0 37 .................................... GTAATTGATATGGCAATTCCAGTAAGAGTTATTGGCA 997 36 100.0 37 .................................... AGAAAACACCGCTACCGCTACCGCTACCGCTTTTCAA 1070 36 100.0 36 .................................... GGAAAAAGTCATGGCTTACATCAAAGAATCCTATTA 1142 36 100.0 40 .................................... CTAATTCGGTTTTGATGTATCTCCAGCCTGGGGGCGTTCT 1218 36 100.0 34 .................................... TCGGGCGATTACAATGATCTCTCTAATCGTCCAA 1288 36 100.0 39 .................................... GTAGTAGAGGGGTTAAAAATTAAAAATGTCTGACACTAA 1363 36 100.0 37 .................................... TGGCGGCCTGCTGTACGTCTGTGCGCCCTGCCGGTCG 1436 36 100.0 36 .................................... GGAGAAAGAACGAAAATATCAATTTGCGGCGGGCGG 1508 36 100.0 35 .................................... CTAAACCTGGGATCATCTAAAACAATACCTAGGAT 1579 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 21 36 100.0 37 GTTTCCATTAATTCGACTTCCGAAGAAGTTGTTGGG # Left flank : GCGGAGACTGGAGAGCGGAGAACGGAGAGTTTGAGAAACAGGATTTTTGATGCAGCCAATGACTAACCATCAATGCTTTCCGTCCTCCGTCCTCCGTTTTCCGTCCTCCAAACCG # Right flank : GAGCGGGCCTCTGGGACCCTTATCCCACCTGCATTCTACCACCCCCAATTCAAGGTGGAGCAAACCCCTCTCAATAACCCCCCTCCAATTCTCAATAAGCCCCTCTCCCAAACCGCTCAAACCCTTGTCCCGCAAGTCATTCAAGGTGGATTTCGCCATGTTTATCACCATCCTTACCCGCCAAATCCCCATATCCAGTCGCTTTCAGCGCCAGTGATCCCCTAATATCCTGACCATCGCCATCCAACAAACAGAGGTGCTTGCATCGCCACAACGTAACAATAGTTTGGCCATTACCAAAGAAAACCTAAAGCTTTCAGGGGCCTCCCCGCGATCGCGCCTAGGTTGGGATAACTTTAGCCGAAAAATGCCTGATATCAATGATTCATCTAGCCCCAGTCCCCGGTACTGCCACCTACCAGAACCCCTGAGCCCAACCAGGCCTGACCAAAATGTTAGACCTTTCCGGAATCATCACCCCAACCCTTGAAGGCTAACTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAATTCGACTTCCGAAGAAGTTGTTGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 89886-88571 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000015.1 Nodosilinea sp. P-1105 NODE_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 89885 35 100.0 34 ................................... TCCCAGAGAGCTTGCATTGCTGCTCGGGTAAAAC 89816 35 100.0 40 ................................... GCGATAAAGTTATCTCTACGATTCGGAACGTTTACCAAAG 89741 35 100.0 35 ................................... TTTTGCGATGGTGCAGGCGCTTGGGGTCCAGAGTG 89671 35 100.0 34 ................................... CAGGAGTTTACAACTGCAATAATGAGTATTACAG 89602 35 100.0 39 ................................... ATCCATCTCGAGGGTTAGGCCCTGGAGAAGGCGGAAGCT 89528 35 100.0 33 ................................... GAGCTCCTAACTCTATTAATGCTTTTGCCTCTT 89460 35 100.0 36 ................................... TCTTGGGCCCCATCATGACCTTGGACTAGGGAGATA 89389 35 100.0 37 ................................... TAGTGAGGCGGCGGATCACCACCTCACGTTTTGGAGC 89317 35 100.0 35 ................................... TCGCAGCGGCGCAAACATGCCTCCAGCGATCCAGC 89247 35 100.0 37 ................................... GTCGTATTTGCAGGCAAGGGCTCTGAAAAGGTAACGG 89175 35 100.0 35 ................................... ATGTCGAATTACACACTGCGTATCATCATCTATAA 89105 35 100.0 36 ................................... CTTGAGAATTCGCAGAACGGTAGAACTGCAAATAAC 89034 35 100.0 37 ................................... ACGAAGGTTGGGAGGGAGATTGTGGGGTCAAAGGAAA 88962 35 100.0 35 ................................... ACCCCCCAACCAATGCTCTGATGAGGTTGGTCCAG 88892 35 100.0 34 ................................... TCAAACCCGCCAGCGTTAAACCGACGAGCTGACC 88823 35 100.0 38 ................................... TTTGCCAGCGCACACGACTTGATGCATATCTACCCACT 88750 35 100.0 37 ................................... TCAAGCGGCTGGGTCATAGTTACACCCCAAATGCAGA 88678 35 100.0 38 ................................... GCCCAGGCAGCAATGAACACCGAACTGATGACCAAGGA 88605 35 82.9 0 .........................C.GCAA...G | ========== ====== ====== ====== =================================== ======================================== ================== 19 35 99.1 36 CTTACCGATTAGGCAAAATCGGACTTGTTGGAAAC # Left flank : GCAGAGAAGCATAGGTGCTGCCACTCAGCGATATCAAGCCCCAAAAGCTAATATTTATCGCACCACTGTTTCAGGTTATGTGGGTGAAGAAGTAACTCCAGGTTCCAAAGAAACTCGTGTGGGTCGTATTTGGCACCGCATGTATCCCCTAGGGGGTGAACAAGCTGGGAAATATTTAGAGTTGCTTACTTTTTTCCCAAGTTCTGAGGCCAATGATTCAGCTTCGCGAGATTTTCAAACTTTTTTGGCAAATCAACAGGAATTTCAACGACTTTGGAGGGCGTAATAGCTACAATACAGGGGTGCTTTCGTCGGGTACGGCCAACGGCTGAAACCCGCATTCTTTCGTCGAACCCAGCGGACGCCTTGCCACATAAGGGATACAGCGATTTTTTCACGACCTTGTTGAGAACGCACCCCCCTTTGTTGACAGCAGTCTGGGACCCCGAGAATTTTGGGGGTCTGGACCTGGCTCCTCGCAAGGGTTTCAGAGAGGCACC # Right flank : ATCCCTGGGTTTTTGAAAAACCCAGGGATCTGAATCTCTTGGGTACCTATCCAGGGTGGCTCTGCCGCCTATAGCCTGAGGCAGAGCCTCGGGGGGGCATTCCCACGCAGAGCATGGGAACGAGCGGAAAGAACTCTGGGGGGTCTCTGGTGCCCAGGCTCCGCCTGGGTGCCTATCCGGGGTGGCTCTGCCGCCCATAGCCTGAGGCAGAGCCTCGGGGGGGCATTCCCACGCAGAGCATGGGAACGAGCGGACCCCAGGGATTCCCACGCAGAGCATGGGAACGAGGGGAAAGAACTCTGGGGGTTAACAGTGGGATTTCTGGTAACGGTAACAATTCTTACTTGCAACCAGGGCGCGATTGGGCTACCTTACTGAGCTAAGACTGTGTGCGTGCAGTCTTAGCTTCCCAAAAATTTGGTCAAGCGCCACTGGAAGGAGATTAGGCCCTCCAACCAGTGGCTGACCCCTTCGACAGATCTAGGCTGTCTCGGAGGCTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTACCGATTAGGCAAAATCGGACTTGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 88637-89246 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMDQ01000017.1 Nodosilinea sp. P-1105 NODE_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 88637 35 100.0 35 ................................... GAGCCGACTCTGGGGTTCCTTTTAAGTGGCCCCAG 88707 35 100.0 36 ................................... CCGCTAACGGTCATTCTGCATGGCAAATGACTGTTC 88778 35 100.0 35 ................................... TCTACTAGGACCGGTGCCGAACCGGCAATTAGCTG 88848 35 100.0 35 ................................... CCCAGGACACCAAACCCAGAGGTGACCTGCTCGAG 88918 35 100.0 39 ................................... AAGTGCCAGAACTTCAAGCTAAGAGCTAGAAGTTAGAGG 88992 35 100.0 35 ................................... ATCCCCCTGAGGGGTGTAGCCAGACAATTGCTCAG 89062 35 100.0 36 ................................... GCTACTGCCTTGAGTCGGGTGAATACCCGCCAGAAA 89133 35 100.0 40 ................................... AAACCTGCTCTCGATCAAGAGGAGCTAAGTGACACCAATA 89208 35 88.6 0 ................GG.....T....G...... | G,GCC [89228,89237] ========== ====== ====== ====== =================================== ======================================== ================== 9 35 98.7 36 CTCAAAACTTCTCCGGAAGTTGAATTAATGGAAAC # Left flank : AGGGCTAATAAATGGGTTCGTAATTCGTCTAGGGTCATGGGTAATAGGGGTTCATCCCTGAAAATGACAGCGGCATTTTGCCTAGGTCTCGGGTGTTTTGCTTTAATTGTACGTCTGGGAAGGTGAGGAAGTGAGGTTGGGCAATTGGGGTGCTAGCCCACAATCGACAGCCTTAGCCCCAGAATGGCGAGAGAAAGAGTTATTCTCTATCCATATGGAGCATACACAACGACGAAAACAGGCTTCAGGGAAATTTAGAGATGAAAATCACTCAAATTTTAGCGGATACCATCCCTTTGCTCTGTTTCCTGTTGGAGTCTACCGATCGCTGAAACCCCTATTGTTTCGTCACCACCCCCAGATGCCTTGCTCCATAAGGGATGCAGCTGTTTTTTTGGAGGCTTTACTGAGAAATAATGTCATTAGTGGACGCCATGGGTAGACTCCCCCAGAAAGTGTGGTGTAGAATGCAGTTGAGGCAAGGGTTCTAGGACCCGACC # Right flank : CCTCTAAGTGAAAGGGACTGAGGGTTTGTGCTTTTAGTGACTGACGGGCAAGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCAAAACTTCTCCGGAAGTTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //