Array 1 31784-30187 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIJH01000041.1 Salmonella enterica subsp. enterica serovar Heidelberg strain STy018 Cotig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 31783 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 31722 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 31661 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 31600 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 31539 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 31478 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 31417 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 31356 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31295 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31234 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31173 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31112 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31051 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 30990 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 30929 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 30868 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 30807 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 30746 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 30643 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30582 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30521 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30460 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30399 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30338 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30277 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30216 29 96.6 0 A............................ | A [30189] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8391-7265 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIJH01000067.1 Salmonella enterica subsp. enterica serovar Heidelberg strain STy018 Cotig_29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8390 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 8329 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 8268 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 8207 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 8146 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 8085 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 8024 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 7963 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 7902 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 7841 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 7780 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 7719 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 7658 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 7597 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 7536 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 7475 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 7414 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 7353 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 7292 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //