Array 1 517470-517699 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSWN010000001.1 Clostridium saccharoperbutylacetonicum strain DJ069 Ga0423224_01, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 517470 31 96.8 35 .....................A......... ACGTTTTGACGATATGAAAGCGAAAAGTGCAATTT 517536 31 100.0 35 ............................... AGAAATTGAAGTTGTAGAAGCTATGGACCTTATTC 517602 31 93.5 36 ...............A.....A......... ACAAGCAATATACAGAAGGCTATAAAGTCAAACTGG 517669 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 97.6 36 TATTTAAATACATCTCATGTTGAAGTTAATC # Left flank : GTGTCCATTTCTAAAAATCCATTTTGCTCATATACATTAGTTATCTTTCTCACCATATCTCTAAATATTTGCTGTTCCTTTGGTAATAGCTCCATAAAGCCTGGTAATATACTTGGTTGTACTTTATTATTTTTCATAGTTCATTCTCCTCCTCATATTTCCTTTAATCTTTAAACATTACATATGCAAAAAACCATGCAGGCATATATCCTACATGGTTTAACAAATTACTACTAACATCTAATTCATTATCACCAGCAGATACAAGCCTACGAATTATAGACTTGCATCTGCTTTTTAACAGACTAAGTCTTGCTAGTGATGATGTATGAAATTTACTATTTTCATATTAAATGCTTTCATAATATTTCCTCCTAAAATTTATTGTTATTATTATATAACATTCAGATTCTATTTTCAATTCTAATAAAAATTAATTCAAAAGCAAGAAATAGAATGCTTGGTTACAGGCATTCTATTTTTTTTGCTGTACTTTATTA # Right flank : CCATAGCAAAATAGCCATTCCTTAAAATAAATAATACCATTCATCCCTCTTAGAATCAACTTTCACGCAAAAATTTACCAACCGTTTTATGAATTTTAGCTAATATTCATAAAATTCTTCTTAAGGCCTCAGTTTTACTTACATTAATAGAATTTATCTTTCTTTATGCCTGGGATAAACTTTAAGTTTAAATAAGAAATAATAACCTTGGTTACAATTCTACTATTTTTACTTTAATTTTTATATATAAACTTAATACATCTCATGTTAATGTCAATCGCTTTAATGTTATTCAAAGCTAATAATAATACAACATTTAAATACATCCCATGTTAATGTTAATCCAAAGAAAAAAGCTCATTTCCATATCAAAATAAATCTCATATCCCCGTCAGTATAACGCATTTACAAAAAATTTACCAAGCGACCATTACATAATTTCATTTATAGAAAATAGCTCCCTAATCCATTGCTACCTCTAACCCTATATGTCTTAAAAA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTTAAATACATCTCATGTTGAAGTTAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 2398014-2401970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABSWN010000001.1 Clostridium saccharoperbutylacetonicum strain DJ069 Ga0423224_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================== ================== 2398014 29 100.0 37 ............................. AATGAATGGAGACAAGTTCTTAATTTACCGCCTAAAG 2398080 29 100.0 37 ............................. TTTACCTAATGCCATTGCAATCAACCTCACTTTCTTC 2398146 29 100.0 36 ............................. TTGGTATTTTCATGTAAAACTTTCCTGCATCACTTG 2398211 29 100.0 36 ............................. CATGGATATTATTCATATCAATTTTATGTTCATCAA 2398276 29 100.0 37 ............................. TTTTTCTTCATGTTTTTAAACCAGTTAACTATTTCAG 2398342 29 100.0 36 ............................. ATAGGCTACTCTCTGATTGTTCTTTTTTGGCGTTAC 2398407 29 100.0 36 ............................. TATTAAAAATAAATAATGTATCTGTTGTATTTTTAA 2398472 29 100.0 36 ............................. CTGCTTTATATGGAACTTATTACAATGCTTATAGAG 2398537 29 100.0 36 ............................. TTTAATTATTTTAATCTTCCATTTGAATCTATTAAA 2398602 29 100.0 37 ............................. AAATAAGATTTCATAAGAGTTAACTTATTACCTCTAA 2398668 29 100.0 36 ............................. ACAACTAAGATACCATCCCCATCAATTATATATTCA 2398733 29 100.0 36 ............................. CCAAATTTCACGTTCCAGCCTCTTTTTTTCTTTAAA 2398798 29 100.0 36 ............................. CTTGCTGCTTTTCTTCTTTTCTTCAATTTCATAAAG 2398863 29 100.0 37 ............................. TTTGAATTTGTTTTTGTTCATCAAGTTTCTTGTCTTC 2398929 29 100.0 36 ............................. TTTTCAAATGCCATAGACATTAATTGTTTTGTTAAG 2398994 29 100.0 37 ............................. TCAAATTAATTGTTTCATTAACATGGTCACTAATCAA 2399060 29 100.0 37 ............................. CTAATCATAATTTCTGAATTTTGAAGCTTTCCACATT 2399126 29 100.0 36 ............................. TATTTTTATTGCTTTTTTCTTGCAATAAATGTATAA 2399191 29 100.0 37 ............................. TGGTTTACATTTGTTATTGTAGATATTAACACATCAT 2399257 29 100.0 37 ............................. AAAGAAATAATGATAGAGTACATTAAGGATAATGTTA 2399323 29 100.0 37 ............................. TCGTTTTTTACATAGTTGTATGTTCTTTGAATTCCAT 2399389 29 100.0 38 ............................. AAAGATTGGAGTGTGCCAGTTCCAATAACTTTTAGAAC 2399456 29 100.0 36 ............................. ATTGAAGAAATTAAAGAATTGAAAGAATTATAATCA 2399521 29 100.0 36 ............................. AAAGGAGATATACACATGAATAAAAGAGAAAGAATA 2399586 29 100.0 36 ............................. CTGGACCATATGTTTAATAATGAATCAGTTCAGTTT 2399651 29 100.0 37 ............................. AAATTTTTATATTTCATAATGAAGTCAATCGCATCAC 2399717 29 100.0 38 ............................. GATAGAATGGCTAATATTATAAAAAAATTTCTTAATGC 2399784 29 100.0 36 ............................. TGGAGTAATATTCCCTTTATGTTCTATATAAATTTT 2399849 29 100.0 36 ............................. CATATATAATTTAACAGATTTATAAATTTTGTCAAT 2399914 29 100.0 36 ............................. CCTTTTAATATTGTCTAAAACTATCAGATTTCCAAA 2399979 29 100.0 37 ............................. TCAATATATTCCATGTTATAAACGTCATAATGTTCTA 2400045 29 100.0 36 ............................. ATAGGATAAAAGTTAGAGTAGATTTACTAGTAAAGG 2400110 29 100.0 36 ............................. TAGCTCCACCGCTTGTAGCTACAACACCAACCATAG 2400175 29 100.0 102 ............................. TATTATTATCGTATTTATCAGCTTTCAATAAGATAAATGCAACTACATTTAAACAGAATGTAAATTATTATTATCGTATTTATCCCAAAGCCAATAGTCTAA 2400306 29 100.0 36 ............................. TAAGATGGTTGATAAGACTATACGTGAATATTATGA 2400371 29 100.0 37 ............................. AATGCTTCTAAATCACTTATGACGCGTTGTTGCATAG 2400437 29 100.0 36 ............................. CAATGAGTTTAGATGATGAAAGTTTAACATTAATTG 2400502 29 100.0 36 ............................. TTAGATCATCTATTCAATAATGAATCAGTTCAATTT 2400567 29 100.0 36 ............................. ATTAAATGGTTGCTTAAGAATAATAAAAGATATCAC 2400632 29 100.0 36 ............................. CATTCTCCTATCTCAATAAATGAATTATTATTTTAA 2400697 29 100.0 36 ............................. ACGCAATCACCATTTAATATTAAAATTCTGAAATCT 2400762 29 100.0 37 ............................. GTGGAATGTTGCCATCCACGTTACAATCTTGTGTTTT 2400828 29 100.0 37 ............................. CTTTATGAATTTAAAAATACTGATATATCAAAAGTAA 2400894 29 100.0 37 ............................. ACCATATTAGCCATTTTAGCTTCAAATGATAAATTTG 2400960 29 100.0 37 ............................. TTTTCCTCAAAAGAAAGCTTATCCTTATCGATTGAAG 2401026 29 100.0 35 ............................. GCTTACGTGGCAACATACAAAAAGTTTCTTTATAC 2401090 29 100.0 37 ............................. AACTTTGTTATAGCTTCTAAAGAAAATATTATTACTA 2401156 29 100.0 37 ............................. TGATTATAACATTATCATTGATGATATTTTTGTACAA 2401222 29 100.0 37 ............................. GGCATATATTTTGTTGTTGTATACTCAAAAATGTGAA 2401288 29 100.0 36 ............................. TGCATTAATACCATCATGCCCGACATTGCTTCTTGC 2401353 29 100.0 36 ............................. AAAGGTACAATAGATAGATTTACAAGTGATATTTAT 2401418 29 100.0 37 ............................. TTGGTATCAAGACTAGTTTCAATAATTATTTTTCCAT 2401484 29 100.0 36 ............................. ATTACTAGAATGGGAGGAAAAAGCAAATTAAGAAAC 2401549 29 100.0 37 ............................. TTTACTGGCTCCTTTGTAGCCCCTTCTAGTGTAAATT 2401615 29 100.0 37 ............................. CTGTTCTGCCTTCTTTTTGTGCTTTGGATATTTCGGA 2401681 29 100.0 36 ............................. TATATTTATTACATCAGTTAAATTTATTTCTCCTTT 2401746 29 100.0 36 ............................. AAATTATTATATGTTTAGAGAAATTGGGTGGGCTAA 2401811 29 100.0 37 ............................. GAATGATGTGAACCACCACTACTTCCACCAGTTGTTG 2401877 29 100.0 36 ............................. ATTTTAATCTTTGACCATACTACTATTTCTCTTTTA 2401942 29 96.6 0 ..........G.................. | ========== ====== ====== ====== ============================= ====================================================================================================== ================== 60 29 99.9 38 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : ATAAAAATGGCAATTGAAAATGAAGAATATAAGCCATTAAAGGCGTGGTGGTAAGATGTTTATAATATTAACATATGATGTTGGAGAAAAGCGGGTAAATAGAGTGCGGAAATGTTTAAAAAAATACTTAACTTGGACTCAAAACTCAGTATTTGAAGGAGAAATAACAGAAGGAAAATTACATAAATGTCTAGCTGATGTTAATAAATTTATAGAAAGAGATGAAGATTCACTCTATATTTATATGGTTAAAAATATTCACAATATAAAGAAAGAAGTAATAGGACAGCAAAAGAATTATGATGAGCTATTTTTGTAGTTGCAGTAAATCAATTTTGGGTAAAAGATGTTTTAAATCAGCATAAATTCTAGCTTTAGAGTAATAATATCTATAAACACTATTTCCATACTAAAGGTTTACCGCAAGAATATAAAAATTAAATCAAATTTATCAGCGATAAATGGCTAATTTACTAGAGTTATGGTATACTTTTTTTAGG # Right flank : TTATGATGAAAAATGAACAATAAAAGATTCAGCTATTGTTTTATATATTGTAATTCAATAAAATTATAATAAGTATGTTATAGAAAAAAATATATGACATAGTGATGCAGCACATCAAAAATTATTTAAATATATATAGAATGACTAGCAATGGATATCTCTTATTATTTAATTTTAATAAAAATAAATAATAAGAGTGAAAAATATTTTATATAATAAACAAAATATTTGAAGATAGAGTATAGTTGATACGTTGACAAGGAGATAAGGAATAATGACTTTACAACAATTAAAATATGTAGTAACCGTTGCAGACAAAGGAACAATTAGTGATGCAGCTAAGGAATTATTCATTTCTCAGCCTACAATTACTAATGCTATTAAAGATTTAGAAAAGGAAATGCATATTACTATATTTAATAGAACTAACAAGGGAATTGTAGTTTCAAATATAGGAAATGAATTTCTTGCATATGCAAGGCAAGTACTTGAACAAGCTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //