Array 1 2337291-2335092 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059732.1 Spirosoma sp. PL0136 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 2337290 30 100.0 35 .............................. CCGGCCTGGAGGCTGATGTATTGATTCCACGACTC 2337225 30 100.0 37 .............................. GGATTATAAAAGGAAGGAAACGACTAAAGAAAAAACA 2337158 30 100.0 35 .............................. CTGGTGAAGTAGTTGGGGCTTACGCCAATGCCGCT 2337093 30 100.0 36 .............................. GAAATCGAACGAGGGCATTCTATCGGGCCTGCGGCA 2337027 30 100.0 36 .............................. TATTTCTCAGAAATGTAGAGTTTGTTAGGCTCCAAA 2336961 30 100.0 35 .............................. TCTTTAATTTGGGGGTACGACTGGCTGGGTACCAG 2336896 30 100.0 36 .............................. TCTGGGGGTGAACCTGCAACCACAAGTGAAACCGTT 2336830 30 100.0 36 .............................. ACAGTCATTCGGTACTAACCTATTCAACAAGGACGA 2336764 30 100.0 36 .............................. TAATGGCACTGATGATTTGGCGCCCGATGCTGGTAT 2336698 30 100.0 36 .............................. TTGAAAGGGCGCATTAGGATGATTGGTACACCTGGT 2336632 30 100.0 35 .............................. CCAAAATAGACCTCACGACAACGGAACTGTCCGGG 2336567 30 100.0 36 .............................. ATGACTCCCTCCTCTGGACTGACCCCAGACATTGCA 2336501 30 100.0 36 .............................. GTTTGTTATGAGCAATGAACAACAAATACTTGAACA 2336435 30 100.0 36 .............................. ACATCTGGGCCATAGGGTACTGTCTGCTGACCAAGC 2336369 30 100.0 36 .............................. ATGGGGGTGACTTTGCGATGGTGGAGCAGAACGCAT 2336303 30 100.0 36 .............................. GTGGTCCAAAATTACACTTTGGTATTACGGATCGAC 2336237 30 100.0 36 .............................. CCGAAAAATTCACTTGTAGCGGCTTGCGCTTTTTTA 2336171 30 100.0 36 .............................. CCTTAGACGCATGGGCACTAAAAGCCGGAATCCGCT 2336105 30 100.0 35 .............................. CGTTGCCCAGCCCTACGACGACGACTAAGGATTTG 2336040 30 100.0 36 .............................. CACCTGGGCAATGTGCTCAACCCGCTGCACTTTATT 2335974 30 100.0 36 .............................. AAGGTAAACTCGACGGGCTTCACGCCGATAATATTG 2335908 30 100.0 36 .............................. CCGGCAGTAGCTTATACTGGTCGATTTCGGCCAGGC 2335842 30 100.0 35 .............................. ACTGATTTAGCCAATATTGCTTATTGACATCTGCT 2335777 30 100.0 35 .............................. ACGGAAGAAGCCCACGCCTTCTCGAAGCTTGGCAG 2335712 30 100.0 35 .............................. AATCTTAACCACGTCAATTGTCCGATCGAAAGCCC 2335647 30 100.0 36 .............................. CTTCTACAAATTACTGGTCACCACGTCGGGGCGATG 2335581 30 100.0 36 .............................. TTATAGGGATTGAATATGGTTCGATTCTTTCCCTTT 2335515 30 100.0 36 .............................. AAATTATTCATGGTGACCCGATATCGGCCCGGCTTG 2335449 30 100.0 35 .............................. GCTGCTCGATCTGTCCAAGCCGAACGCCGAGCCAA 2335384 30 100.0 36 .............................. GCGTTAACCACGAGGTCTGGCGGGTGCGCCCAGGAA 2335318 30 93.3 37 ................T.G........... TAGTCGGTAGCGGTGAAGCCAGACGAAAAGTTATTTG 2335251 30 90.0 36 .G..............T.G........... CTTACTAAAGTGACTTTGATGAGTGCGGGGAATTTC 2335185 30 90.0 34 ................T.G..........A CAACTAAAAAGTGAAAAAATTTTTCACTTTTATC 2335121 29 80.0 0 ..C.C........-.C.T...........A | A [2335102] ========== ====== ====== ====== ============================== ===================================== ================== 34 30 98.6 36 CTTCTAATCGTACCTGAGCGGAATTGAAAT # Left flank : CATCAGCGGGGGATACAGTCGTGAACGAGACAATGCTCCAATTCATCAACGCTGAGCTTCCCTTTGGGGGCATTAACAACAGTGGCGTAGGCAAGTCAAACGGCTTCTTCAGTTTTCAGGAATTTTCCAATCAACGAGGAGTCATGAAACGCGATTTCGGGACCATGAAATTCATTTACCCCCCTTATACCGATACGGTAAAGAAGCTCATTCAGTACATTCTAAAGTTTTTATGATCTTTGTGATAACGGCGAACAGACAACGACCAATGACTACCCCAAGTCGTCGACTGCATTTTACACCTCAATTTGTTCTTTGATCAACGGCCAGTTTGCCTCCGGAACGAGCGCACTCTAACGCTATATAGCTAACTATCAGCAAGTCGTCGATCAACGGGGTTTTTCGTGCCATTACAGGTCGACGACTTTATACCTGCTTTCGGACTGGCGAAATCATCTATCTGGGCTACTTAATGCCCTTTTTGAGTCGTAAATTCACGG # Right flank : ATCAGGGCAACCACATACGCTGGGGCGTTTTTTCGTTAAAACTGCGTACATTGATACCGCATGTTACGAAGACTCGTCCTTACGCTCCAGCTGCTGTTCGTAGCCCTGATCGCCACGGCACAAACACTCCCGATTCTCGATCAAAATCCGGCTAGCCTTCGCTGGTATCGGATTACAACACCCCATTTCCGAGTACTCTATCCGTCTGGTATTGACTCGACCGCCCAGCGAACAGCGAACCGACTCGAAAGTTTGTACGAACCTGCCAGTGCCTCTCTGGAAAAGCAACCCCGGCGCATTTCGGTTCTGCTTCAGAATCAGACGACGAATAGTAACGGTTTTGTTACATTGTTTCCAAGGCGATCTGAGTTTTTTGCCGTGCCCCCACAAGACCCCGGTTTGTTGGGAACATTTAACTGGCTCGATCTGCTGGCTGTACACGAGTATCGACACGTTGTTCAAAATGATAAAGCCTTACAGGGCTATGGACGGGTTCTTTA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAATCGTACCTGAGCGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 3805830-3804353 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059732.1 Spirosoma sp. PL0136 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 3805829 30 100.0 34 .............................. CTGCTTTTAAAAAATCCGATACGGTCACATCCGG 3805765 30 100.0 35 .............................. CCAGTGCGGCTACGCTCTCCGGCGGCTTTGCTGAA 3805700 30 100.0 35 .............................. GTGGATGATACGGTACCCAATATCGTGCGCACAAT 3805635 30 100.0 36 .............................. GCGGTTAACAAAGAGGGGCGGTGTGAAAAAGTGTTC 3805569 30 100.0 36 .............................. GCGATTCGGGGGGCTACACTCGTGTGGACTACATCC 3805503 30 100.0 36 .............................. GTAGCAAAATTGTAATGCGCGAATTTTTCTAATTCT 3805437 30 100.0 36 .............................. ATTGCTATCGGATGAAAGTCGTCGTATTCCGATTGG 3805371 30 100.0 36 .............................. CCGGCAGTAGCTTATACTGGTCGATTTCGGCCAGGC 3805305 30 100.0 36 .............................. AGGGATCACTCGCGCCATTTACTATCTGAGGAGTTA 3805239 30 100.0 35 .............................. ATTTGTAATACAGGCTGTATTACAGGCTGGACAGC 3805174 30 100.0 35 .............................. ACCTCCTGTAAGTAATCAATTCGCTTAGCGGGCTC 3805109 30 100.0 36 .............................. ACGCCTATGTGGATAGTGTCAACACCTACCTGGCTG 3805043 30 100.0 36 .............................. CGATAAACCGATTGAATCCAGGGAATTGCAGTTTAA 3804977 30 100.0 36 .............................. CAGTTAAGCCGTGAGTTTGAGAAACGCAAGAATGAA 3804911 30 100.0 37 .............................. TCGGTAAAGGTGTTGTAACGAAAATCCGCAGGATTGT 3804844 30 100.0 37 .............................. ACGATAGGTGTTTCTTCGGTCGGACTCATGGGTTTGT 3804777 30 100.0 36 .............................. ATCGTGCGTCCCTTGCACTCTTGTAAAAGGTACTCT 3804711 30 100.0 36 .............................. AGGTGAGTGGGGCTGACTTGCTTACAGTGTTGGATC 3804645 30 100.0 37 .............................. TCGTTAAAAGTTATCAAGTTGTTACACATTAATAATT 3804578 30 100.0 35 .............................. AAAGTAAGGTTTTAGGTGTATGGCATCCCCATAAT 3804513 30 100.0 35 .............................. GGCTACAAAGACAAGCTGAAGGAATTACACGCTTT 3804448 30 100.0 36 .............................. ATCGAAGGAGTGTGTATCACTCCGTTCGGTAGTCAT 3804382 30 90.0 0 ....................A.....GG.. | ========== ====== ====== ====== ============================== ===================================== ================== 23 30 99.6 36 CTTCTAATCGTACCTGTGAGGAATTGAAAT # Left flank : AATTGTGCTATGTACGTAATTCTAGTCTATGACATGGGGCAGAAGCGTGTCGGGAAGATGCTGAAACTCTGTCGGAAGTATATGAACTGGATTCAGAATTCGGTGTTCGAAGGCGAGATGACAGATGTGCAGCTAAATGAGTTGCTCTACGAAGCCCGGCGTATTATGAAAGATGATGAAGACAGTCTGATCCTGTTCAAAAACCGCGACAAGAAGTGGTTGGATAAGCAGATTGTAGGTAAGGAACGGCAATCGACCGATGATTTTCTATAAGGGTGTGGCGTTCCGATTGTCGTCAATCGCCTTTATCTGTTCATTGACTTATGGTAAAGTGCTATCTCATGGCGGTGTTTTTCTGTCTATTCTGTTGACTGTCAGTAAGTCGTCGATCGGCGGCTATTTTCGTAGTTTTACCGGTTGACGACTTTCTAGTCAGAAATTGCATCGCAAAAACTGTGTCAGGGCTGTCCAAAGCCCTTTTTTTAGTCGTAAATTCACGG # Right flank : TTTATTTTAAATCTAAACTGATCGTCTAAGCGTACCAACCAGAGGAGAGGTCTGGCAAACGACCAACTTCGTCAGCAATCGCATTTGCTTATAACCATAGGCTAACAAAAAAAGGTTTGGCCATCGATTTTACATTCCAATTGCGTGTAGACTTGTTAATGAGGTCAGAGTATAGTAACCCATTAAAATGCTAGAATTTGAAACCTTAATCCTTATGCGAGTTAATCTAGCAGCAGGGATAGCCATATTTGGCTTTGCATATGGCTATCCGGTTTACCTTGGAAAACCAGGTTTAGGTAGTGGCTTTATCTACCCCTTACTCCTTTTCATTGTACTGTTTTTAGCTTCTTTCTTTATTCCAGTTAAAAAACCTTTCCGACTCGAGCGCTTGCGGAAGTTTCGCCGATTAAAGCGAAATCGGGTGTAGTGGATCCTAATCGTTTCCTTTGCAGTTGTGAATTGCTCCCTATCAATAAGTCTTGAGAGGACACAATACAGCT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCTAATCGTACCTGTGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 3 4344653-4332914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059732.1 Spirosoma sp. PL0136 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 4344652 29 100.0 36 ............................. AATACATGACCCTCAACCGGGTCAACGAGCCTTACC 4344587 29 100.0 35 ............................. GTTTTAACCCCTGCCCCTCAAATACTTCGATACAG 4344523 29 100.0 37 ............................. AAATTTTCATTCCAGTCAGGAACATTGCTCAAAAACC 4344457 29 100.0 35 ............................. GTTCCAATCAGGGACCTACGTAACCTATGCAGCCA 4344393 29 100.0 38 ............................. TCGTATCGGGTAAGATTCAGTGTTATTTAAGTTTGAAT 4344326 29 100.0 38 ............................. TCAGGATCAACTAGTTCAAAGTGCGGGTGCTCCAAGTA 4344259 29 100.0 35 ............................. AATCCTGGCATGAGGTCACACTTTCTCAGGCACTG 4344195 29 100.0 36 ............................. CTATTCAAGGAGCAATCGACGCAGCCAATTTGCTTG 4344130 29 100.0 35 ............................. GATGGCATGACAAATCAACTCATTGATCTTGGAAC 4344066 29 100.0 35 ............................. GGAGTATTATTAGCCGCGACATTTTTCAGATTAAC 4344002 29 100.0 37 ............................. AACTGGTAAAGCCCGGTATGATCGGTATTCTACTTTT 4343936 29 100.0 37 ............................. TCAACCGCCACGGCTTCAATAGCCGCTATCTGTTCAT 4343870 29 100.0 35 ............................. TTTGAATCACCTCGGCAATGGTGGAGCAGGTGGCA 4343806 29 100.0 37 ............................. AAATGGTGTGATTACTGTATTGTTCATCCAAATCAAG 4343740 29 100.0 34 ............................. TACAACCAGCCGCCAACGCAAAATATTATACACG 4343677 29 100.0 36 ............................. TTGCCAAAGAGGTCGCCATCAAACGCGGCAAATTCA 4343612 29 100.0 34 ............................. TTGTAAGCAGTGCGATGGCAGTGGTTTCGAGGGG 4343549 29 100.0 36 ............................. GTGGAAATCTCAATTTTCTGGGTACTCGTGGTGATC 4343484 29 100.0 37 ............................. CATGGAGGAAAGGGGGGCAGATTCAGCTTCTTGATCA 4343418 29 100.0 37 ............................. TAACCAGCGCGCGTCCAGGACGGCACAATTGAAGTTG 4343352 29 100.0 38 ............................. GCGAAGTGGTTTACGATGGTTATTCGGGTTCAGGCACT 4343285 29 100.0 37 ............................. TAAAAGTCCAGGAGATAACACCATCAGAAATAAAGTA 4343219 29 100.0 35 ............................. TATGTGATTCTAGGTCCCTGGCAGGCACGTTCGGG 4343155 29 100.0 35 ............................. ATCTTGATTTGTATGTTTTGGATTTAGGTGAAGTA 4343091 29 100.0 35 ............................. ATGCTGAACTATGAAAACCCCTAAACTAATCGGCT 4343027 29 100.0 37 ............................. CTCCTGTCTTGACTCCTCAATAACAGTCGGAAGAATA 4342961 29 100.0 37 ............................. TTGGCCTTTGCATGGCCACTGAGCATGGCCCACAGTG 4342895 29 100.0 37 ............................. GAGAATATCTCCTCACCACAATCAATCAGTTTCGCGG 4342829 29 100.0 35 ............................. CTGGTGCAAGGGGGACATCACTATGGTGAACCCGC 4342765 29 100.0 33 ............................. ATGATCTGGGTCGACAAATCATGTTCTTCTCGG 4342703 29 100.0 38 ............................. TAGTATAACCGACTGGCTTCTTACCTACTTTAATCCTG 4342636 29 100.0 36 ............................. TTAAAACGTGGACAGATTTAGCGACGGGTTTGCCTT 4342571 29 100.0 37 ............................. TTCTAACAGGTGATGCCAGTGTCATAAAAGAAAATCC 4342505 29 100.0 35 ............................. ATTTTCGCGGTAAGTTTCAAAGGCTTCTTCCCAAT 4342441 29 100.0 35 ............................. GGTATGCAATTCTGCATGAAACTTGGCCCTACCGC 4342377 29 100.0 36 ............................. GTCCACCATCAACAGCAACCGCACCGACGCTGATGG 4342312 29 100.0 36 ............................. TGGGTAACAGATCGATCTTGTTAGGCTCCAGTACAG 4342247 29 100.0 37 ............................. ACTGGAAAAACAGGGATACCAAGTTTATTAACTATCG 4342181 29 100.0 36 ............................. CGTTAATTCCTTCGACCCAAGCTGCACCATTCCACG 4342116 29 100.0 37 ............................. GCAGGAAGCAAACGTACTAACGGTTGAGGGCTTTACG 4342050 29 100.0 38 ............................. TTGAGGTATTTGCTCCACGCTTCTAGGTCCTGAATCGT 4341983 29 100.0 36 ............................. TTGTAATAGGTTACTGCACTTCCTGAAATAACACTT 4341918 29 100.0 37 ............................. ATAACAAGGTCATTAAGGATGCTTTCATAAATCACGC 4341852 29 100.0 36 ............................. TTAACTCAAATGAATGCCTATAGCCAAAAATCTATT 4341787 29 100.0 37 ............................. GCGAAACAACAATGCCCGTGTTTGGTGTTGGAAAACC 4341721 29 100.0 37 ............................. TCTCCACAACGAATCATTAACGCAAGCCATTGACAAT 4341655 29 100.0 36 ............................. ATGGTGCCACCGTCCAAGTGACCTTTACACCCGTTC 4341590 29 100.0 35 ............................. AGTTCTATGCCCTTGCTGAACAGGTAGCCATGGAG 4341526 29 100.0 37 ............................. AAGACACGTGGAGCCTGCATAAAGAGGCTGGAATTGG 4341460 29 100.0 36 ............................. CAGGGGTTGACGTTTACCAGGACTTCGGGTGCAACG 4341395 29 100.0 37 ............................. GGTTCCAAACGTCCACGAAAAAGCGGGTCGTTGGATA 4341329 29 100.0 35 ............................. GTGACGGACGCGATGAAGGATGGTAAGTACATCGA 4341265 29 100.0 36 ............................. TGGCTGGACGCACACAGCCGAGTCAGCCAAATGGAG 4341200 29 100.0 37 ............................. TGGTGGTCTGCGAGCCAGGATCGGTAGTTGTCGTCGA 4341134 29 100.0 36 ............................. ATACCAGGCATTGGGGTCTTGCAATTCGTTGCTCTC 4341069 29 100.0 35 ............................. TTTGCACGTCGAAACAGATATCCAGGGGCGTATCG 4341005 29 100.0 36 ............................. GTGGCCCTGCACGAGCTGAACATGGTCGGGTGTTAA 4340940 29 100.0 35 ............................. TTGCATAACTCAGCTCCTGTTGGGGGTCGCCAGTA 4340876 29 100.0 36 ............................. TGAAATATCCTATTTATCGCCCTTTAATTGTACTAT 4340811 29 100.0 37 ............................. AACCTCGATCATCAGGCTTTTAGGCATCTTGAGTCCT 4340745 29 100.0 36 ............................. TAGACGATACCGATAAACCCCATTGACTCCATATAG 4340680 29 100.0 36 ............................. CTGGTAGGCGTATCCCCCCCATACAGAATGGATACT 4340615 29 100.0 36 ............................. AAAAATCAACGCCCTTTCGCAAACCGAAAGCCTGGT 4340550 29 100.0 37 ............................. GCAATACTTCGAACCCACACGGTACGACAGCCGCCCA 4340484 29 100.0 37 ............................. TTGTGTCGAGATAGTATAGGAAACCAAGCCCCAAGAT 4340418 29 100.0 37 ............................. GTGTCACAGAGGCATCTGCCAGTTTCGATGTCGATAC 4340352 29 100.0 37 ............................. GGATATAACCCGTCGCATTGTAACTCGCTGAGCCGGT 4340286 29 100.0 37 ............................. GTATTAATATCCTCATCAAAATTATCCCATACCAGAA 4340220 29 100.0 38 ............................. TAAAATGCAAAAAGGCCCTACCCGGAGTGATCCAGGTA 4340153 29 100.0 35 ............................. GAGCTACAACCTCCGACGCATCGGGCAGGATAATG 4340089 29 100.0 38 ............................. CGAAGTAGTCCGGGTACCGATTGATAAGGGCCTGAATG 4340022 29 100.0 35 ............................. GTGCTGAATAAAATCATTCACGCAGTCGGCGGGGT 4339958 29 100.0 37 ............................. GTTAACTACTGCGCTGGCCACTGCCAATACAGAAAAA 4339892 29 100.0 36 ............................. TTCGTATGTGCCTTGCCGCTGAATTGGGACGGAACC 4339827 29 100.0 38 ............................. TATTTTTCAAAGGTTCGCTTAATCCAGCCTTCAATCGC 4339760 29 100.0 37 ............................. GAATTCTGGGCACTTACCTCCCAGACGCCCGAATGGT 4339694 29 100.0 36 ............................. ATTACCACGACCCCACGGCGAAGTATTGGCCTTTAA 4339629 29 100.0 34 ............................. GGTGATTTGCGCCAGTTTCGCTGTGCATACACGC 4339566 29 100.0 36 ............................. GCCCAAACCATTACGACCTGTAATCGAATTGCGCTG 4339501 29 100.0 37 ............................. TGAAAAGCGGTGGCAACATGAACACGATCAACGCGAG 4339435 29 100.0 35 ............................. TGGGTTTCTTACGTAGGCTGGGCGCTGAAAGGAGC 4339371 29 100.0 37 ............................. TGAAGGTTTTCGCGACTTCATCCAGGTCAGAACCCAC 4339305 29 100.0 36 ............................. GGAGTAGGCTGGATCACTTAAGTTCTACAACTAAGT 4339240 29 100.0 38 ............................. GTACGACCGCCAAGTTTATCACGATGCTGGCCGTCAAA 4339173 29 100.0 37 ............................. TTGAAAGACCTCCCCAGGCACCCGTCTTTCCGGGTTG 4339107 29 100.0 37 ............................. TTTTTTAACGGGGGTATCTTTGGCGCGTTACCCGCTC 4339041 29 100.0 38 ............................. GACTTATCCTTGTCGGGGTCAATACCGATCACGTAGCG 4338974 29 100.0 38 ............................. TCTGCTTCTGTCCACTCAGGATTCAGCGTGCGGCCATT 4338907 29 100.0 35 ............................. TTGGCTGAAGGCAGGTTACACCAAGGACGACAGGA 4338843 29 100.0 35 ............................. TTCATCCATCAGCGCATAGATTTCCTTTTTGATCG 4338779 29 100.0 34 ............................. GCGGTTGATGTTCAGAATAAGACCACGCTTTGAG 4338716 29 100.0 37 ............................. ATGATTTCAAAGACTTTATGAAGGAATGGCCGGAATA 4338650 29 100.0 38 ............................. TAAACGTTGCCAGCACATTCGCCAGCCCTTTGGCTCCA 4338583 29 100.0 38 ............................. GTTTTACAGCATCTCCACCCCCGGCTGAACTTAATCTC 4338516 29 100.0 35 ............................. AGGGACGGGGGCAGGGGGTAGGGTGCCTCCTTTTT 4338452 29 100.0 37 ............................. GAATCAACGACAGCCGATTGCCATTCGCGGCATTCTT 4338386 29 100.0 38 ............................. TCAGTGTCGTTCGGGGATTGTGCAGGGCACTATACACG 4338319 29 100.0 41 ............................. GTGTCCATTCCGAAAGGCCAAACCGGTATGACTCCGGGCAC 4338249 29 100.0 38 ............................. CCTTTGCCAAAGGCAGTTGCCGTATCGGCATGGACCAG 4338182 29 100.0 37 ............................. TTAAGAAAGGGCATTGTATCTGCCACCGGCCCGTTCT 4338116 29 100.0 38 ............................. AATGCAGGTACATGCTCATCGCGTGATCTTCTACCCAG 4338049 29 100.0 36 ............................. CTTTGATATTGACATCAATGCTGTTTTTGCCCATCG 4337984 29 100.0 37 ............................. GGCCGCCCCCTTTCCCTTCCGATTGGAACCCAGCCAT 4337918 29 100.0 34 ............................. GGAGAAGAACCAACAGAAAAAAGGTGTAACTCTA 4337855 29 100.0 37 ............................. GTAAAAAGTGCTACGCCTGCGGAGGAACAGGTATCTA 4337789 29 100.0 37 ............................. ATTGGATCTTCACCGTTGATATTGAACACACCCTCCT 4337723 29 100.0 35 ............................. TAAGTCAGCCGATTTCCTCAATCATCAACAAAAGC 4337659 29 100.0 36 ............................. CCAAGAGAGTCACGGTAAAGAAATCCGCTTTGCGTG 4337594 29 100.0 36 ............................. ATTCCACCGGTTGCTCGTTTCCACTTTTGGCGGGTG 4337529 29 100.0 36 ............................. TGGGTGCCATACGGAGTCTGAACACCTTTGCCCGAA 4337464 29 100.0 35 ............................. TTGGCTCCGGCTTATCCATCAATAAGCATCGTTGC 4337400 29 100.0 37 ............................. GTAGGCTATCACTGCGTGAAGTGCTTCAGGCCAAAGG 4337334 29 100.0 36 ............................. GTATATCGTATTTGATGGGGGGCCAATTGGTTGCAT 4337269 29 100.0 37 ............................. GTTATCCCACCAAGGCTCCAACCGAGCGGCTTACGAA 4337203 29 100.0 35 ............................. TTTAAAAGCAACTGGTACGGTTTTCATGCTTAGTT 4337139 29 100.0 37 ............................. CTTTAATCACTGATTATAAGGCGGTTTCAGATGCGTA 4337073 29 100.0 38 ............................. TATACCCCCATCTGTACCCGCTGCCAGTTTTTTCGTAG 4337006 29 100.0 37 ............................. CGATGAACTACTTCAACTCATTAGTCGCAAAATAGCC 4336940 29 100.0 35 ............................. TTTTGGAATAGCCCTTTAGGCCGAGGTACTCGTAG 4336876 29 100.0 38 ............................. ATGCTTCGCCCAATAAGCCTGAATAAGCTTAATGTAAT 4336809 29 100.0 37 ............................. AGGTCGTAATCACAGATACCAAGCGATCCAGGGGCAA 4336743 29 100.0 37 ............................. GACTCAATATCCGGGATGCTACGTTACTGGCGTTACC 4336677 29 100.0 37 ............................. GTTTCTCCAGAGCTATGTAAGCGGCCGTGTCACGCTT 4336611 29 100.0 37 ............................. CTTTCTTTTGGGCAGCTTTCAAGTCTTCCTCCTTCTT 4336545 29 100.0 36 ............................. GATATACATTACTTCATTCCGAGGAATCTACGCGGG 4336480 29 100.0 37 ............................. ATTGCCCTGCGCGTGCTGTATTACGCGATCAATACAA 4336414 29 100.0 37 ............................. TCCTTCAAGTATTATCCGGGCGCAACGGATAGTATTA 4336348 29 100.0 37 ............................. GTTTTCAACTGATTTTCTTCCGGGCGGCAAACGATCA 4336282 29 100.0 35 ............................. TAGCTCAATTCAAGTCGAGTTTTGAGTTGTTGTAT 4336218 29 100.0 37 ............................. TTAAGATCAAAGGGAAAACCTACACGAAGGCACAGGT 4336152 29 100.0 37 ............................. CTACGAATCGCTCGGACTCGATACTGTAAAACGTAGC 4336086 29 100.0 37 ............................. ATCTGGACGAAATTAGGGTATGGTGGTCGGGTGAATA 4336020 29 100.0 35 ............................. TTACGCGGGATGATAATTCAGGTGCAAGCCTAACG 4335956 29 100.0 36 ............................. TTGTCGTCGTTATCGCCAACGCGCCGATGCTGGTGC 4335891 29 100.0 36 ............................. AAGGGTTGGACCTCAAGCACTACTACTACATGGGTA 4335826 29 100.0 36 ............................. ATGGCGTTGCCTGGTCTTCTGGAACGTATTATGGCT 4335761 29 100.0 35 ............................. TCGACAGATCCTGCTTGGCCAGATTCGCCAGGGCT 4335697 29 100.0 36 ............................. TGTTGTACAGGTAATCGCTGTTAGACGAAATGTTGG 4335632 29 100.0 36 ............................. GATACCTGCACGCTGACTACGACAGCTAATATTGAT 4335567 29 100.0 36 ............................. GTGTGTTGTTTGAGGTTCGCACTTCTTCACGTGAAC 4335502 29 100.0 38 ............................. CGTCGATTCGGAGCATTTCAGAAAACCAGAGCGTAAAA 4335435 29 100.0 38 ............................. AGCTAAAGGGCTGGCTCATCCGTGTCGAGCAAGAGGCA 4335368 29 100.0 37 ............................. TTGCTTACTGGCTTCCTTTTGAATCGCCAATTCCGCC 4335302 29 100.0 38 ............................. CTGACCTACTCGGGTGACATGGCGGTAGACTATGTCAT 4335235 29 100.0 37 ............................. TTCTTATCGGGCTGTTCATGGAACGTTAAAGGCAGTT 4335169 29 100.0 34 ............................. AGGTGATAAGACGTGGCAGGACCTTAATGCTGGC 4335106 29 100.0 37 ............................. GGTATGATCCAGTATGGCCTGCAACACGCTTCCCTTC 4335040 29 100.0 36 ............................. TAAAAGCCGCCCGATCCTCAGCGCAGGTACCGCCCA 4334975 29 100.0 36 ............................. ATCGGTGCGCGCAGCGGCTTCCAAACAAAAGAAAAT 4334910 29 100.0 37 ............................. CATAATCAGAAGTTTGATTATTCGACTGAAAGCACAC 4334844 29 100.0 36 ............................. TTAGGCTAAAAGCCTACTAAAGTTACCTCTACCGAC 4334779 29 100.0 38 ............................. GGCTATAAGCTCAAGACTCACTATTATGATGGCGCTAG 4334712 29 100.0 34 ............................. GGAGAAGAACCAACAGAAAAAAGGTGTAACTCTA 4334649 29 100.0 37 ............................. GTAAAAAGTGCTACGCCTGCGGAGGAACAGGTATCTA 4334583 29 100.0 37 ............................. ATTGGATCTTCACCGTTGATATTGAACACACCCTCCT 4334517 29 100.0 35 ............................. TAAGTCAGCCGATTTCCTCAATCATCAACAAAAGC 4334453 29 100.0 36 ............................. CCAAGAGAGTCACGGTAAAGAAATCCGCTTTGCGTG 4334388 29 100.0 36 ............................. ATTCCACCGGTTGCTCGTTTCCACTTTTGGCGGGTG 4334323 29 100.0 36 ............................. TGGGTGCCATACGGAGTCTGAACACCTTTGCCCGAA 4334258 29 100.0 35 ............................. TTGGCTCCGGCTTATCCATCAATAAGCATCGTTGC 4334194 29 100.0 35 ............................. CTGAGTAAGGAATAGTGGCCTCGTAGGTTGCGCCG 4334130 29 100.0 37 ............................. TAGCTTCGCCACTGGTCATGACTGATTTCGGCCGGCC 4334064 29 100.0 37 ............................. TTCTGCAATACCTGCTGCAACGTGAGGGCGCCAGTGG 4333998 29 100.0 38 ............................. AAGTAGGCTTAGGCCAATGTGGTTGCTGGCCCCCTCCG 4333931 29 100.0 38 ............................. AAAAAGATCCCTCGCAGAAAGCCCAGATATTAGGACTC 4333864 29 100.0 37 ............................. TCTTGTCGTATTGCTCGTCTTCGTGCGGATACAGGCA 4333798 29 100.0 37 ............................. CTGTTAGCGATCTAAAGGACGCTCTTTCGCAGATTTC 4333732 29 100.0 37 ............................. ACGTTCTCGTTTGCAATGGATTTCAACCCCGGCGCAA 4333666 29 100.0 37 ............................. ATCAGATGGTCAACCTCTTCGGTTTCCCAGGTGTTGG 4333600 29 100.0 36 ............................. GATCGGTTGGCGCTTTGTAATTGTCTTTGACTGCGG 4333535 29 100.0 35 ............................. TCAGGTTCGCGTTTTTGGTCAGCGTTGGGTTGAAA 4333471 29 100.0 38 ............................. ATTACAGAACTACGACTGGCTGCTCATCTGGAGCAATT 4333404 29 100.0 36 ............................. AATATGAGTGTTTTCACCTGATTGAATAAGAAAGAG 4333339 29 100.0 36 ............................. ACGCAGCGACTGCGTTTGGTAAACAGGTTGGGGAAA 4333274 29 100.0 36 ............................. GAAACACGCAGGAGCACAAGGACGCTCGTTCATTGC 4333209 29 96.6 37 .................A........... AACAATCCCCCGCCTGTTAATCAGTATCTTGGCTCGA 4333143 29 100.0 37 ............................. TGTTGTCAATCGGTTGCGGCTTAACTAGTCGCCGGGT 4333077 29 100.0 38 ............................. AAGGACATTTATTTTCAATTTAAAAGCCTTTTAGGCGA 4333010 29 96.6 38 .....................G....... GCGCGAAACACTTGCCCAGTCGCCTTTTGTTGAATGGG 4332943 29 93.1 0 .......................G....T | G [4332916] ========== ====== ====== ====== ============================= ========================================= ================== 180 29 99.9 36 GTATCAATCGCACCTTCGGGTATTGAAAG # Left flank : ACTAAACCGTTATAACTATGCCGTTTTGTATTGCCGTTTATGATGTGAAGCAGAAGCGAGTGGGTAAAATGCTCAAATTATTCCGGCGTTACCTAACATGGGTGCAGAATTCCGTCTTTGAAGGTGACCTAACCGTTGGTCAGTTAAAGCAATTACAATTGGAAGCGGATGCGCTTTTGCAGGACAATGACGGCGTGGTGTTTTATCAGTTTCGCGACGAACGCTATGTCGAACGTATTGCCCTCGGTACTGATGAGGTAAACCGAACGCGGTTTTTATAAGTCGTCAGCCCGTCGAGTTGCGAGATTATTTCGGCATGAATAATGCCTGTTCTAGAAGGCATACCTATCGAAATCGGGCCATACTGATTAATAACGGCCTTTTTATCAAGTCGTCAGCTTCCTGCTTTTTTTGCAGTACTATAGGCTGACGCTTTTTTGTGTTATTTTTAAGACTGAAAACCTTCTTAAAAGGCACGTACAGTGCTTTTTTAGGGCTTG # Right flank : ACTACTAGAAATAATGATGCTTTATTATCGTCTGAATCCACGCCTATGTTGTTGCTTTTGCTCCCGTTTTTCACGAGTCTGTTGAGCTAGCCTTTTGACTTCATCTTCATCGACAGGCTGGCCTTTCATAGGCTGAGATCGTTTAACTTCTTGACCTCCGCCCGTGCCTTGTTGATCCCCGGTTTGGGTTGAGGTTTGTTGTTGTCGGTAAGCCTTTATCATGTCAGCCGCCTTGTCTTGACTTTGAGAAATATCGGGCGATGGCTCCGGCGGTGTTGGCTCTCCTAAATACTCCAGCTGCTCCTGAGCAAAACGGGTTTGTACGTCTTTGACTTTCTTTTCGTGGAGGACTTTGAGCCGATCTAGCTGCCCATCAAATCGGCTTTTATCGTAATGATCGTTTTGTAGTCGTCTGATTGTGGCTTGGTCTGCATAATACTCCTGATTAAGCCGTTCAAGCTCCTTGTCTTGCTGGGCTAACAGATCGCTGTATGTCATAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAATCGCACCTTCGGGTATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.00,-2.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //