Array 1 64552-63380 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYR01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain PL1383 NODE_1_length_449249_cov_83.536561, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 64551 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 64490 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 64428 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64367 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64306 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64245 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64184 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64123 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64061 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63958 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63897 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63836 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63775 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63714 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63653 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63592 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63531 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63470 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63409 29 96.6 0 A............................ | A [63382] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 82054-80684 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYR01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain PL1383 NODE_1_length_449249_cov_83.536561, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 82053 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 81992 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 81931 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 81870 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 81809 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 81748 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 81687 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 81626 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 81565 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 81504 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 81443 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 81382 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 81321 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81260 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 81199 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 81138 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 81077 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81016 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 80955 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 80894 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 80833 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 80772 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 80711 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //