Array 1 18165-16977 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYAP01000002.1 Escherichia coli strain 402654_aEPEC, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18164 29 100.0 32 ............................. GCATTACGGTAAATCGCTGGGGCTGTCCCGTA 18103 29 100.0 32 ............................. CTGGGGCTGCACATTGACAATAAACCGCCGCC 18042 29 100.0 32 ............................. ACTTGATTACCGCTATTTTCTGACGATTTAAT 17981 29 100.0 32 ............................. CCTGATAATTTACGCTATTCAGCGGAGATGAT 17920 29 100.0 32 ............................. TGGCTATAGTATCATATGATTTCTATTTGTCA 17859 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 17798 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 17737 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 17676 29 100.0 32 ............................. CCGCCGATTTCCCTGGCGTCAAAAGCGGTGAG 17615 29 100.0 32 ............................. CTCTTTCTCAGTCATCTGGCGCTCAACGCCGG 17554 29 100.0 32 ............................. GCAGCAATTGCCGGAGTTTTACTAATTGCCTC 17493 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 17432 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 17371 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 17310 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 17249 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 17188 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 17127 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 17066 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 17005 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGTCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATGGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8957-9960 **** Predicted by CRISPRDetect 2.4 *** >NZ_CYAP01000017.1 Escherichia coli strain 402654_aEPEC, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8957 29 100.0 32 ............................. TTGTGCGAACCTCAGTTATTGTGCCCTGACGA 9018 29 100.0 32 ............................. AATTTATTCGGTTTATTCCGTCGGCGCGCGAC 9079 29 100.0 32 ............................. GGGATTTGCACTCCAGTTGATTGACCCGCAGC 9140 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 9201 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 9262 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 9323 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 9384 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 9445 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 9506 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 9567 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 9628 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 9688 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 9749 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 9810 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9871 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9932 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //