Array 1 181845-179880 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXL01000003.1 Salmonella enterica isolate STY34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 181844 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 181783 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 181722 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 181661 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 181600 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 181539 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 181478 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 181416 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 181355 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 181294 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 181233 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 181172 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 181111 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 181050 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 180989 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 180928 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 180867 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 180806 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 180745 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 180684 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 180623 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 180561 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 180458 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 180397 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 180336 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 180275 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 180214 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 180153 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 180092 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 180031 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 179970 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 179909 29 96.6 0 A............................ | A [179882] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 199469-197976 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEXL01000003.1 Salmonella enterica isolate STY34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199468 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 199407 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 199346 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 199285 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 199224 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 199163 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 199102 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 199041 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 198980 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 198919 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 198858 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 198797 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 198736 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 198675 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 198614 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 198553 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 198491 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 198430 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 198369 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 198308 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 198247 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 198186 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 198125 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 198064 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 198003 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //