Array 1 1276-2563 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAO010000268.1 Pseudomonas sp. AF1 contig_268, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1276 28 100.0 32 ............................ CCGAGTGGGCCGAGCGCGCCATCGATGGTACT 1336 28 100.0 32 ............................ TATCAGTGATGAGCAGTTGGCGGAGGTTGAGG 1396 28 100.0 32 ............................ TACATGATGCGACCCGAATTTCGCATTCGAAA 1456 28 100.0 32 ............................ TGTCAGAAGGGATTACCGCGGACCTGGTCGCA 1516 28 100.0 32 ............................ TCAGGCTCATTTCGTTGTCCTCGATGCCCCGG 1576 28 100.0 32 ............................ GGGAGGGCATGTGATGCGAGCAGACGAGTACC 1636 28 100.0 32 ............................ GGGCCCGACGGCTAGTAATTCGCGGAGGATGG 1696 28 100.0 32 ............................ TGTCCGACAACCCGCATAGCATCCCTGAGCAA 1756 28 100.0 32 ............................ AAGGACTCTGATCTCTTGACTCACCATTTCCT 1816 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 1876 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 1936 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 1996 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 2056 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 2116 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 2176 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 2236 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 2296 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 2356 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 2416 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 2476 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 2536 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 33-1980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAO010000233.1 Pseudomonas sp. AF1 contig_233, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 33 28 100.0 32 ............................ AAAATGAAACGGATCAGCTCGCCGACAATCTC 93 28 100.0 32 ............................ TGGAGCGCTGCACCATTACCCGCGCAGCCCGA 153 28 100.0 32 ............................ ACCCGAATGCATCACCAACCCACGGCGTGCCC 213 28 100.0 32 ............................ CTCCAGAGCGGGTCCGACAATAGTCAAAACCC 273 28 100.0 32 ............................ AGGACTCAGCGAGCCTTCACAAGACGCCTCCA 333 28 100.0 32 ............................ ATCGAGCAGTGCATCGCCGTCTACAACCAGCT 393 28 100.0 32 ............................ TGATCGACATCAGGAACGCCCACAGAGGCCGC 453 28 100.0 32 ............................ ATCACGCCCCAGCCACTTTTCAACCCCGCACT 513 28 100.0 32 ............................ GGTGTGTGCGGCCAGCTCGGACCCGAACTTGA 573 28 100.0 32 ............................ AGTCACAGCCGCCGCAGCAGCCAGACCGCCCG 633 28 100.0 32 ............................ TTAGCGAGTCACCGGGACAAAGGTGACCACGG 693 28 100.0 32 ............................ TGTCCGAACTCCCATCTGTTGCCCTGATCAAC 753 28 100.0 32 ............................ AGAAACTGCGGAACCGGAAGTGCATTGATCAA 813 28 100.0 32 ............................ AAGTTCGTGACTGAGCACCGGCACCTGGGCAT 873 28 100.0 32 ............................ ATCACGTGTGATTTTCGATGAACGTGATTTTT 933 28 100.0 32 ............................ GGAACGAAGCGGGTGCGACACGTCGCAACTGC 993 28 100.0 32 ............................ AGACCATCACACCGGTGACGCTGCACATCGTC 1053 28 100.0 32 ............................ GCATAAAAGTGCCAACGTCGACTTTGTAGCGT 1113 28 100.0 32 ............................ AGGAGGTTCTGGTCCGTCGCCCAGTTCCCGGT 1173 28 100.0 32 ............................ TCGCCCGTCACGGAGCCCGCCGCCTTGGTCAC 1233 28 100.0 32 ............................ AGAATGGACTGCCGAGCGCCGGCCGCCAGTTG 1293 28 100.0 32 ............................ CGGCATTGCTGAATGCCATAGCGGATCTGCTC 1353 28 100.0 32 ............................ GGCATCCCCGAGCGCAAGCTTCCATCCCCGCC 1413 28 100.0 32 ............................ AGCGGCCTGGACCTGGTTCGGCCCGTCCAGGC 1473 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 1533 28 100.0 32 ............................ GATACCTGACGGCCTGGTGCTGGATCACCTGT 1593 28 100.0 32 ............................ TGTCCTTTCAACTCGGTCTGCTCGTAGAGGTT 1653 28 100.0 32 ............................ TTGAGAAGCCGCGGGTGTCTAAGAAACTGGTA 1713 28 100.0 32 ............................ AAGACGTGGCAGGCGGCCTACAACCACGACGA 1773 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 1833 28 100.0 32 ............................ GTATGAAGTGTGTTACCGCGTGGGCGATTCCT 1893 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 1953 28 96.4 0 ...........A................ | ========== ====== ====== ====== ============================ ================================ ================== 33 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACTCTGCGCCTCGACGTCGGGATCTACGAAAAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1001-1508 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFCAO010000360.1 Pseudomonas sp. AF1 contig_360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1001 28 100.0 32 ............................ TCCCGGTAATGCCGGACAGAAGCCCGGCGAGA 1061 28 100.0 32 ............................ TGTGTTTCTAGCCGCTGGCCGCCTCTACACCA 1121 28 100.0 32 ............................ TGGGAAAGTCGGTCGACGAGCTTACCGTGGCA 1181 28 100.0 32 ............................ TAGCTCACAAGCGCGCTCAGCAACTACTTCTC 1241 28 100.0 32 ............................ AGTATCGATCTGCGGGACATCATCAACGAGGC 1301 28 100.0 32 ............................ ATAGACCTGAAAGAGGCCGCCCAAGTCCTGAT 1361 28 100.0 32 ............................ TCGGTCGGGCTGCGCCTAACGTAACGTCTGCA 1421 28 100.0 32 ............................ AGTCGATGAACATGAAAATCCCTGTCAATATC 1481 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TGGGGCGAAACCCCTAGGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //