Array 1 44781-43821 **** Predicted by CRISPRDetect 2.4 *** >NZ_LBKD01000010.1 Streptococcus agalactiae strain DK-PW-089 ctg7180000004298, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 44780 36 100.0 30 .................................... TCGTGGCACTGCTTTCTATGTAGACGAAAA 44714 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 44648 36 100.0 30 .................................... TATGTCTTCTAACAGTTGCTTCTTGTGCTT 44582 36 100.0 30 .................................... TTTTATTGGTTTTCTAAGTGCTCGACCATC 44516 36 100.0 30 .................................... AGTTACTTCTGCTTGGGTTTGATAAGGGTC 44450 36 100.0 30 .................................... GAAATGTGGAGTCATTCAGGTTGATGATGG 44384 36 100.0 30 .................................... AAAAAATAAATGACTTTAAAGCACTTGGAG 44318 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 44252 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 44186 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 44120 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 44054 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 43988 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 43922 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 43856 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //