Array 1 1354-1501 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJW01000011.1 Photorhabdus cinerea strain DSM 19724 scaffold_0011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1354 28 100.0 32 ............................ CCGGTGATCCGGTCCGTTGATGTGCATTTTGA 1414 28 100.0 32 ............................ GCTCCACGGGTATAAAGACCGTGTATATATTC 1474 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 37 GTTCACTGCCGTACAGGCAGCTTAGAAG # Left flank : AGGCATTGAATGATTTGCAAGCATTACCCTGGTTAAAAGGACTTAGGGATTATACTGAAATAATGGATATCCAACCCGTACCTCAAGATACTCGATATCGTTGTGTTAGTCGGGTACAGGTTAAAAGCAGCGTGGAGCGGCTTCGTCGTCGTTCGATCAAAAAAGGGTGGTTAACGGAGGAACAAGCTCGGCAGAGCATTCCAATAAGCAAGGAGCAACGTACTCATTTACCTTTTTTGCTTCTTAAGAGTTTGTCATCAAGACAAACTTTTCCATTGTTTATCGAACAAGGACCAATAGAAGATAAACCAACGTCAGGCGTTTTCAGCTCTTATGGATTAAGTTCATCTGCTACTATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGGGATTAGTCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : GTCTTTAATAATCAATATATTAAAGCTAATATTTAACGTCACTGCCGCACAGGCCGCAGCGCACTCAATTGAGCGCGCTAAAAAGGAAGTTAATCTTGTATTTCTTGGAATGGGTTACTTCTTATGCTTTTGAGCATACGCTTCACTATTAACCCATTGATGATCCTTTTCCCAGGTAAATAGCCATTTGCGGGTTGGCCCGGCCATGACATTGAGATAATAGTTGTCGTAACCGGCAATGGTTGCTACTGGATGATAGCCTTTGGGAACTATGACCACATCCTTGTTGTAAACAGCCATTGATTCATCCAGTGAACGGTCGTCGGTATAGACGCGTTGCATGCAGAATCCTTGAGATGGGTTTAAACGATGGTAATAGGTTTCCTCCAGATAGGTTTCTTGTGGTTCATCGTTTGTATCGTGTTTATGGCTGGGATAGGAGCTGGTACAACCTTCATCGGTAAAGACTTCAACCACCAACAAGCTATCAGCTGGTTTGT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1162-2136 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJW01000058.1 Photorhabdus cinerea strain DSM 19724 scaffold_0058, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1162 28 100.0 32 ............................ TTTATCTGATTCTGCCAGTTTACCCATGTAGC 1222 28 100.0 32 ............................ TTTACGGCTGGCCACTTGTGCCCGAAAATAAC 1282 28 100.0 32 ............................ TATATATCAGTAGGTTAAGGCTGTGTTGTTGT 1342 28 100.0 17 ............................ CTTAGTTGACACCGTTC Deletion [1387] 1387 28 96.4 32 ..T......................... ATTCTTTGTCCATTCTATTTCCTTTATTCAGA 1447 28 100.0 32 ............................ CTTGAATTGTGAGCCTTGCGAAATATGGCCGA 1507 28 100.0 32 ............................ CGTATTATAGCGATACTAATGCGGCCCGGTTC 1567 28 100.0 33 ............................ TTAGATTGTGAAACACTTTGATGTAAGATTATC 1628 28 100.0 32 ............................ CCTAAAAATCACCCTATTTTCATTCCTAATTA 1688 28 100.0 32 ............................ ATTCGATTGCGAATATATGAAATTAAAACAGG 1748 28 100.0 33 ............................ TTATCCCGGATATGAACGACGGGCGGTAAATAT 1809 28 100.0 32 ............................ AATTGAGTTTTCATACCCGGTTTGTTGATGAA 1869 28 100.0 32 ............................ GAAATCTCATGATGAGGCCGTGTGCCGTAGTG 1929 28 100.0 32 ............................ AGTAATTCATTGAGCTGATGGGATGACAGATC 1989 28 100.0 32 ............................ GCCAGACTTGCGACGTCAGCCATTTAAAATCC 2049 28 100.0 32 ............................ AAAATGATTCATTAGAACAACTGACGGTAGTT 2109 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 31 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TCTATTAGACGCTTAAGCTGTAGAGGTGATATTAAGCGTCAACTGTTTATCGTTACTGTTGAAAATGCAGACACCTCGAGTAAGTTCCGAGTGATCCCATATGCTGAACTTACAGTTTGTAAAGACAAGGTAAGATACCTTGTAAATCCGGCATATCAATATCCTGAACTGGAGGATTGATTGTCTTCAATAAATACCAATATTGAAAAAGCCTGCGAGATAAGAGGCGCTAATTTTTGTCGATGATAGAGTTCGGTGTGATTGTTCTATCATCATTGAACGTTTTACAGGCAACACTCTCACTTACTGCATAGATATTAGGATAGAAGGCTTGAGTGTGTGATGGTCTTTGGGATACAACCTTATTTTTACCCTTTTTTTGAAGTGATTTATAACCAATTGATTTTTTTGAAAAATTAATTATCTCTTATAAAAAGGGTTTTTCACTTTTTAACAGTTGTGCTATTTAAAAATCAACAGGTTAAAGTTAATATGTAACA # Right flank : AGTTGGGGTGTCACCGTTTGGCACTATGCCGATGTGTAAAGCATAATCATTCCTGTTCAGGAAAGGTACCACGCTGCGAATTAGTAAGGAATTGTAAAGTTTTTTTAATTTGCATTCGCGATATTTTACCTTGTGTAAAATTTATGCATAATGTTTTCCATAAGTGAAATTAACTATTCGGGTAATTCTTAATTATGGATAACAGCTTTTCTCCAAGTGACCTCAAAACGATTTTGCATTCCAAACGCTCTAATATTTATTACCTGCAATATTGCAGGATATTAGTTAATGGTGGCCGTGTTGAATATGTCACTGATGAGGGAAAACAATCACTGTATTGGAATATTCCAATTGCAAATACCACGGTGATTATGTTGGGAACGGGGACTTCTATTACTCAGGCGGCAATGCGTGAATTTGCTAAAGCAGGTGTTTTGGTCGGTTTTTGTGGTGGTAGCGGTACACCGCTGTTTGCAGCCAATGAGGTTGAAGTTGATGTA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4563-3571 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUJW01000061.1 Photorhabdus cinerea strain DSM 19724 scaffold_0061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4562 28 100.0 34 ............................ CCTGAAATTTTTGAATACTACGACTTACCCCCTG 4500 28 100.0 32 ............................ CATGGGTGAAAACAACGATAAGGTGCTACTGC 4440 28 100.0 33 ............................ GGCGACGAGGAAGACGCCGAAGAAGAGGATGAC 4379 28 100.0 32 ............................ GTGATCAGCTGGCAAACTGGCAACCGGCGCTG 4319 28 100.0 32 ............................ GCGTAATGTGTAGATATATATATTTTGCTTTG 4259 28 100.0 32 ............................ TTTATATGTGATGTATATATACAGGCACAAAA 4199 28 100.0 32 ............................ GATGATGGACACAACATTCTGTTGGATATTCG 4139 28 100.0 32 ............................ TCACCAATTCCGTATTTATGGCAAATATTAAT 4079 28 100.0 33 ............................ CGCCGTAGGCTTTCATGGCCTCAACAACCTTAT 4018 28 100.0 32 ............................ TTATTGCAGCAGCGTGATAATGGAGATACAAC 3958 28 100.0 32 ............................ ATGAAATCAGTGAAGAAGATGCGAAAGCTGAG 3898 28 100.0 32 ............................ GGATAACAGCGAATATATGAAATTAAAACAGG 3838 28 100.0 32 ............................ CATCACTCCCTATGCAATTGCCCCGGGTGTTC 3778 28 100.0 32 ............................ CCTGATAATCTGAATCGGCGCCAGACCATAGG 3718 28 100.0 32 ............................ TGTTAATAAGGCTAACTTCGCGATCCTTCACT 3658 28 100.0 32 ............................ AAAAAGAACGCGCCCGCCTGACAAAAGAAATC 3598 28 89.3 0 .............T......T......G | ========== ====== ====== ====== ============================ ================================== ================== 17 28 99.4 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAGAGGATCAAAATGGTCATGATTTCACTGGGAGACATGTGACCTTGTCGGCGGCGTAAACGATGCCCGCTATCGAGACAAAATTGTTCCCATTGAGGGATGAAAAAACGGCAAAAATCATCGACATGACAGAAAATTTCAACTAAGTTGTCCATAGCCTGTTCCACCTCGGAGCTGTTTTTGGTGTGCACCAAAACTTTGCTCCTGGAACAGGCTTCTCGTCAATTTCTTATCCAGAATTCGGGTTAATTTATATATTTATTACAATATGTTAAAACGAATTTAATTATTTCTGTGACTTCTAAATTCTGCCTAAATTTGTACTTACATTGACTAAGATATAGTGTTTCTGTCACATCCTGGTTTTTGACCCTTTTTTAAGGGGCGATTTTAATTTATTGATTTTCAATGGAATATTATTTCTCTTGTAAAAAAGGGTTTTTTCGTTGTTTTATTAAAATATACTTTAACTGTCAGTAGGTTAAGGTTAATATGCAACA # Right flank : ATGGTGAAACACGACGGGTACGGATTAGAGGCGGAAATCCGTAAGACATTATGGATATGCATCATATTTTTGCGGTAATGGCAACATCTATTGCCGAAGTTGGTCGGGATCATGATTATGATTGGAACATTGCTGAACCGGGTTCAATGCGCTCATTGATACAACTTGTCAAATGTATTTAAAGCGATAGGCAAAAAGAGGCACAGATGCCTAGGTGGTACAAGTAGTTTAAAAACACAATAAAGGTTAGTTAATTGCGTAGTCGTGGAGCCAGTAACTGATTGCGGATGGATTCTGCTAGCTCGTCCAGAGAAGGTTGTTCTGGATGGTCATCTGATGTTTCGTAGGCTAATTGTGCTTCGGCCAAATAAGTATGTACGGGTTGGCCGTCGTCATCTTCCATCACAACATGATACCAAGGAGCAGAACGCAAAGCAGCATTGGATGCAATGTCATCCTCTTGAGGTTGTTCCAGAGAATATTCCACATCAATGTCTACG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //