Array 1 3198-3960 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEBM01000038.1 Streptococcus macedonicus strain 27MV Sma27_trimmed__paired__merged_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3198 36 100.0 30 .................................... AGCTAAATAATGTTAGCAACACTAGAATTA 3264 36 100.0 30 .................................... TTACGCATAATGGTGAATTCATTTTAGTAG 3330 36 100.0 30 .................................... CGTACTAGACCATTTTTGACAAGATAAACA 3396 36 100.0 30 .................................... GAAAAAAAAGTCAGTGTTTATAAGGTGTCA 3462 36 100.0 30 .................................... CTACAGCTACTAAGAAAGATGTCAAAGAAT 3528 36 100.0 30 .................................... GCAAGAAAATCACTGATATTAACGTTGCTG 3594 36 100.0 30 .................................... TACCGATGTCAGAAAGTTTACCGGTGATAG 3660 36 100.0 30 .................................... GAAAGATTTAAAATCAAACATCACAATCCG 3726 36 100.0 30 .................................... TGTTGATAACGCTATGGATTCAATGTTTGA 3792 36 100.0 31 .................................... CAAACAATTTGATAAAGAAATTGTTGAAGTT 3859 36 100.0 30 .................................... TGCATTTACTCAAATTGTTTACACCGTAGT 3925 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 12 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : TCACAAAGAAGATGATGGAAGTTTTTGGGTAGAATTTCCAGGATTTGGTGGTGGTACCGAAGGTGATGACGTCGAAGAAGCGATGAAAAATGCTCGAGAAATGTTCGAAAGCTCATTGGCTGCTTATTTAGATGAGGGGGTAGAGCTTCCAAAAGTTGTTGATATGAGTGAATTATCAGTTAAAGATGGTTTTATTACTTTAATTCAAGCAGACCCTTCCCCATATTTAAAAAGTACCAAAACTATTCGAAAAAATGTTACGGTTCCAGAATGGTTAGTCAGATTAGCTGATAGGGAACATGTTAATTATTCAGAAGTTTTGACGCAAGCTTTAGAGAAAAAATTACAGCTTTAAATCGCTATAAACGTTGTAAAATCAAGTTTTTTGAGGTATAATTTTGAGGTATAATATAGTTTAAAATGATGAACCATTCGAGGCTGAAGTCTAGCTGAGACGAATGGCGCGATTACGAAATTTCGTGAGAACAATGGTCCACGAG # Right flank : CTGGTATTTAGGATTTAGCAGGAATAGAATGTCATGAAACTTACTAAAGTTTTAGTGAAAACACCTTTTAATATTTTTCAAAAGTTTTCTTTTATGGTAAAATAAAAACTGAATTTATTTAGATAGGTTGGATTGTTTACATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAATGAAGTCGTCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAGGTGGCGCAATATTTAACATCGTTCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 4600-6286 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEBM01000038.1 Streptococcus macedonicus strain 27MV Sma27_trimmed__paired__merged_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 4600 36 100.0 30 .................................... AGCTCGTTTGTTACATGCTCCTATTCCTCA 4666 36 100.0 30 .................................... ACGATAAAAGATGTTTATAGCTTATTGAAA 4732 36 100.0 30 .................................... TGGCTGATATTGAGAAATGGCTTGAAGAGC 4798 36 100.0 30 .................................... ACAATTAAGTTAAATCAATTGAAATTGGCA 4864 36 100.0 30 .................................... AATATTGTCATGGATAATCATCCTGAGTGG 4930 36 100.0 30 .................................... TTTGTGACGAGTGTTTCAAGTGGTGGAAAG 4996 36 100.0 30 .................................... AGCTGAAGCGATGAAACAAAAGCGCGCTTT 5062 36 100.0 30 .................................... CCAGTTATTAACATTGGTGGTAATTCCACA 5128 36 100.0 30 .................................... TTGATTGATAAAATACTTTCTTCAGGGTCA 5194 36 100.0 30 .................................... TTAATATTGTTAGAGACGCACCTGTTGTAT 5260 36 100.0 30 .................................... CTTCAGCTTGCAGGCGTTTAATGTACGTTT 5326 36 100.0 30 .................................... GACAAAATGAGTGATTATCCTTGGATCATG 5392 36 100.0 30 .................................... ATTTATCGCTTGCGGAACAATCGAGAATAA 5458 36 100.0 30 .................................... TTATTAAAGTGTCTGCTGATTCAACAGATA 5524 36 100.0 30 .................................... TTTCAGCTGTTCCATTTGTCCCATGTTGAA 5590 36 100.0 30 .................................... TAACAGCTGGCACAGATTATTCTGGATATC 5656 36 100.0 30 .................................... GTATATATACTATAATATACTTGTAAGATA 5722 36 100.0 30 .................................... GGGAAGTTTGGCGCAAAATCGTTCCGTTTT 5788 36 100.0 31 .................................... TTAAAAGCTTGTCTTACTAATAGCGAATATG 5855 36 100.0 30 .................................... TACGTATACCGCCAGAAATAGCACTTATAC 5921 36 100.0 30 .................................... GTTTAATCGACTTAATACCAACGCCGTCAT 5987 36 100.0 30 .................................... CTGAAGTCTTTCAATCCGTTCAATCTATTT 6053 36 100.0 30 .................................... GAACGGTATGAAGATATTTCTGAAACCTTA 6119 36 100.0 30 .................................... ACAATGATGGTGGTTTTTTGCCAGTTATGC 6185 36 100.0 30 .................................... TCAACAACTGGAGGATGGAATGGCTGGCAT 6251 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 26 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATGGAAAAAACTTTCTTTATGATTAAACCAGATGGCGTGAAACGCGGGCTTGTTGGTGAGGTGCTTCACCGTATTGAACGACGTGGTTTTACAATTGAAAAATTGGAGATGCGCATGGCAACCCCAGAATTATTAGAAAAACATTATGCTGATTTGGTTGACCGCCCATTTTTCCCACTAATCGTTGATTTTATGACAAGTGGTCCAGTAATTACTGGCGTTATGTCTGGAAATGAAGTCGTCACTTCATGGCGTACAATGATGGGAGCGACAAATCCTAAAGAAGCTCTTCCAGGGACAATCCGCGGAGACTATGCTCAAGCACCAGACGAAGGTGGCGCAATATTTAACATCGTTCACGGTTCAGACTCACCAGAATCAGTAGAACGTGAAATCGCCCTCTGGTTTGGGGAATAAATAAAAGGAACTATTTCGAAGCTGAAGTCTAGCTGAGACAAATGGCGCGATTACGAAATTTCGTGAGAAAAATGGTCCACGAG # Right flank : CTTTTGACAAATCTGTCTGATTTGAAGGAGGGTTTTAGAGCTGTGTTGTTTATTTTAGCATCTTATGATGCTTTTTTCTTTTCTTGAAATGACTTCTAAAACTTTTTATAGCAACGTTTCTGTTTATCTGTTATAATAGAAACAATGATTAATTGTATAGGATTGTAAGATGGATATTCAAGAATTAAAAAAACGACAAGAGAAGATTCGTAATTTCTCTATTATTGCACATATTGACCACGGGAAGTCAACTTTGGCTGACCGTATTTTGGAAAAAACTGAGACGGTTTCTAGTCGTGAAATGCAAGCTCAACTCTTGGATAGCATGGATTTGGAGCGTGAGCGTGGTATCACGATTAAGCTTAATGCGATTGAGTTGAACTACACGGCTAAAGACGGTGAAACCTACATTTTCCACTTGATTGACACCCCAGGACACGTTGACTTTTCATATGAGGTGTCACGTTCTTTGGCGGCTTGTGAGGGGGCAATTTTGGTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //