Array 1 18731-23742 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDYJ01000008.1 Vibrio cholerae strain L15 L15_contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18731 28 100.0 32 ............................ AATATGCAGGGGTTTGAAACGCTCGATGTTAT 18791 28 100.0 33 ............................ CTCAATGAAAGCCATATTTTTTAAGGCCTGCGC 18852 28 100.0 32 ............................ ACCAGAAGGTAAAGCAGGAGCATTTTGCCCAC 18912 28 100.0 32 ............................ TATTGAGCGCATCAACTTTGCACCTCAAACTG 18972 28 100.0 32 ............................ TCATCGACACAATCATCTGCGATCCGAAGACG 19032 28 100.0 32 ............................ GTCAACATCAACCAACTGTTGCACGTTATTCA 19092 28 100.0 32 ............................ TGCGAGCTTGAGCCGTGCAAAAAGTTTATTCA 19152 28 100.0 32 ............................ ATTGAGAAAAAGCGCATTATGCAGGACGAGGT 19212 28 100.0 32 ............................ AAGCTAGAAAGCGGCCAATACAAAGACCATTC 19272 28 100.0 32 ............................ TATTAGATGATTTATATCATTTTCTCGAATAG 19332 28 100.0 32 ............................ GGGCTGAAGTAGAGTTTGCTAAGAAACTTGCT 19392 28 100.0 32 ............................ GTCCTTTAAGCGCCAGAACGTAGTGCCTGCGC 19452 28 100.0 32 ............................ AAGATGGATTTAGGTCTCTCTATCCCTCGTAA 19512 28 100.0 32 ............................ ACCCTCCAGTGCTACTTTTTTCTTTTTAAGAA 19572 28 100.0 32 ............................ TTTTTTTATCAATTATAGGACTGTTTTTTCCT 19632 28 100.0 32 ............................ AGTGTCGATTGCTGCGCGATGAAGTGGGCGAT 19692 28 100.0 32 ............................ GCGCATTGCGTCGGGTCGTCTCTCGATAGTTA 19752 28 100.0 33 ............................ CAAGCGATTGAGCGCACTTAAGCGGTTAGATAC 19813 28 100.0 32 ............................ AACCCTGCCGCCTCTTTTGCGGGTATCTGCCC 19873 28 100.0 32 ............................ CAATCCCCCCTGAGAGGGCGATGAGTGGTGTG 19933 28 100.0 32 ............................ TGATTTTAATCGAAACGGCGTCATCAAATACA 19993 28 100.0 32 ............................ TATCAAAGCCCGTTGTTTTATTAAATATATCT 20053 28 100.0 32 ............................ TTCTAGTGGGGACGGCAATCAAACTCCTAATG 20113 28 100.0 32 ............................ GGACACGGTCACAGATAACTGTGCATCGTTAG 20173 28 100.0 32 ............................ ACACTGAGCGGCGTGGCAAAGGTTAAACGCCC 20233 28 100.0 33 ............................ CAAACAGCGTGAACAGTTTGAAGAGACGCTTCA 20294 28 100.0 32 ............................ AGCAAGCTTGATTTCCTTGACGTTGTTGCCAA 20354 28 100.0 32 ............................ CATTGTGAGCAGTAGGTGATTTTGAAGCAATA 20414 28 100.0 32 ............................ CCACACGGGAGTGCTATAAAGCAAACCTACGG 20474 28 100.0 32 ............................ AGATTCGCCAATGGTGCGGCGGCGAAATTTTT 20534 28 100.0 32 ............................ ACCTAGCTTTGCAAGTGCATTCATGACAACAG 20594 28 100.0 32 ............................ AGTTTGTTTATACAGACTCAGAAAACGCCTAT 20654 28 100.0 32 ............................ GGTAATTGAGACTATCGAATCACAAGGTGAGG 20714 28 100.0 32 ............................ AATGTACCAAGTTGATACGTTGGCAGGCCAGT 20774 28 100.0 32 ............................ ACGACAATGAGATAAACGGCGCGTATATCTAT 20834 28 100.0 32 ............................ GCCAAAGTAAAAAATCGGCATGTGGTAGATCA 20894 28 100.0 32 ............................ AGCTGGAAACAGAGCTTGCAGGTGCTTACTCA 20954 28 100.0 32 ............................ AAATGGGGCGCAATGGGCAACATTCACCCAGC 21014 28 100.0 32 ............................ GAGCAACATAAGGATTGCCATTCGAGGTTTCA 21074 28 100.0 32 ............................ TAGAGGGTGATTTAGAGCCAGAGCTGCGCAAA 21134 28 100.0 32 ............................ AAGCTTGGGCTTGTTGCCTTGGGCGTTGTAGT 21194 28 100.0 32 ............................ TTTTGAAGCAGTTAGTGGTGACGGTCAAACAC 21254 28 100.0 32 ............................ AGTTCTCATGCGGCCTCCTTCTGGTTTTCTTG 21314 28 100.0 32 ............................ CCACGCGATCATCTCTGCAGTTTCTGCCGCTT 21374 28 100.0 32 ............................ CTCAGCCTCTGCAATCAGTCGCAGGTCATAAA 21434 28 100.0 32 ............................ TGAAGATGGTAAAAACTACGTTGTGTTCATTA 21494 28 100.0 32 ............................ TAACAGCGTGGCTTTTCTCTGCACTAGTAGCA 21554 28 100.0 32 ............................ ATAAATCCCCCTGTTGTTTTAGTTATTGTTGC 21614 28 100.0 32 ............................ ATCTTGGCTGGGCGAGTATCGCTATCTACAGG 21674 28 100.0 33 ............................ GGACGGAATGCGTGATACGACGATACGTTTTAA 21735 28 100.0 32 ............................ AAACACAGGCTCGCTGCGTGGTCTTGAGATGT 21795 28 100.0 32 ............................ GATAAGCACGGGTTGCTGGCTTAACTGGGTGA 21855 28 100.0 32 ............................ TATATGGTGAATGGCTCTACGACTTTAAGGAT 21915 28 100.0 32 ............................ TTTTCGGAAGAGATCCAGTCACAGCACAAATA 21975 28 100.0 32 ............................ TGCCTGAAATCATCCAACAACTCATGTAGCGG 22035 28 100.0 32 ............................ TAAAAACGCTTGACTCAGTGATGAAGAAAATC 22095 28 100.0 32 ............................ TTGCAAGACATGAATCGCGTACCGGTGAAGAT 22155 28 100.0 32 ............................ TTAGTTGCATCTTGAAGGCCGAGGTCGCGAGA 22215 28 100.0 32 ............................ ATGCGGCCAATGCGAGGAAATTCATCTTCAAA 22275 28 100.0 32 ............................ ATTTTGATGACGTTGGTACTTGGTACGACTTG 22335 28 100.0 32 ............................ TTCGCTCTGCTTACGTTCAAAGGTATGAACAA 22395 28 100.0 32 ............................ ACCCTGCGGCAGAACAACACCATTCTTAATAG 22455 28 100.0 32 ............................ TCCACCAAATGAGCCAAGCGTGAAAGCAATGC 22515 28 96.4 32 C........................... ATAAGAAAGCATCGCTTTAGTTTGGAATCTCT 22575 28 100.0 32 ............................ GTTATATAAAAAATTCCATGATATAGGTTTAG 22635 28 100.0 32 ............................ AAGCTGCGTGAACTTGGATGGAAAGCGTAGCG 22695 28 100.0 32 ............................ AGTGACTTCAACATCCCACAATACGCGAGTAT 22755 28 100.0 32 ............................ AGATAATGCACATGGCGCGGTTTGTCGCTGGA 22815 28 100.0 32 ............................ GACTTGCATCTTTAACTCAGCAAGTTGAGCAT 22875 28 100.0 32 ............................ TATGCTGAACATCCAAGCGCCGTAAATGTTAG 22935 28 100.0 32 ............................ TTGTTCCAGGTCAAGTCCTTGCGCCTAAGTTC 22995 28 100.0 32 ............................ TTGCGCCACCAGCTCCTGCTTGAGGCTATCCA 23055 28 100.0 32 ............................ GGTTAAGTTTTCTTTATACGAGTTTCTGCCGT 23115 28 100.0 32 ............................ TTAAAGTGCTTGTTGATGTTGCTCACTTTGGC 23175 28 100.0 32 ............................ GCCCATGAAAAGCACGACAAAATCGGGGTGAA 23235 28 100.0 32 ............................ TGCGTGGAACGCCAGCCGCGCAAGACGATGAG 23295 28 100.0 32 ............................ AGTATGCGTTTTCGAACTGCTTGCGATCAGAT 23355 28 100.0 32 ............................ GCGAGAGAGCACAAACGCAAGCGCACCCAGTT 23415 28 100.0 32 ............................ AAAAGGTGGCTAAGCAATTCGAGCGATTAACC 23475 28 100.0 32 ............................ GGGCACAAGGCGGAAGCGAGGGAAAACCTCAT 23535 28 100.0 32 ............................ ACTACCGCAACACGCAAATCACTAATCGTTGT 23595 28 100.0 32 ............................ CTTCTTGGCTAACCGAACGGTTGCCATCGGCC 23655 28 100.0 32 ............................ CATAAATTCAAGTTGCCGCGCTTTGTCTGGTA 23715 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 84 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGTATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAATTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 265182-265389 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDYJ01000008.1 Vibrio cholerae strain L15 L15_contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 265182 28 100.0 32 ............................ CAACAGTCGCAAATGGCAAATAACACCCTTGC 265242 28 100.0 32 ............................ AATTCCTTTGCAGTTTCATCAATCGAACTTTC 265302 28 100.0 32 ............................ GAAAACCTAGCCTCTGAACATTTTGAGAGTCA 265362 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 4 28 100.0 32 GTGTTCTGCCGAATAGGCAGCCAAGAAT # Left flank : CATTGATGGTTAATGAAGGTTTGTTTGAGATCTCCAGTGTTTATGAGGTGCCAGATACTTCCGCAGAAGTAAGGTTTGTTCGTAATCAGACGATTGGGAAAAACTTTTTGGGTTCCAAAAAGCGTCGAATTAAACGCAGTATGGCTAGGGCCGAGTTAGTTGGTATTGAACAATCATTACCAGTAACGAATGAAGACCGTGTCATCGATAGTTTTCATCGAATCCCTATTTCTAGCGGCTCTTCACGGCAGGATTATATTCTGTTTATTCAAAAGGAACTCGCAGATGAGCGTGCTGAATCTGGCTTTAATAGCTATGGTTTTGCAACCAATCAAGAAAAAAGAGCGACGGTACCTGACTTACGTTTTAACCCTTTTGACGAAGACTCTTTTTTAGTTCATTAGAAACAAAGAATTACAGTTGTGAAAATAAAAATGGTGTTTTTACCAAGTTGTGACTTTAAGCAAGAATGATCAGATGCTTAGTGATTATATTTTATA # Right flank : TAGGTCAGGAAGAAAGCAACCTACCTGCTGAACAAGCAGTTAATAATCAACACCATCAAGTTTAAGTTTTTGGCTTGGTGGTTTTTTGTTTAAAAGGCTCCCCATGTATTTAAAAAGACTTGAATCTATTGATGTTAATTACAATCACTATGATGTAGGACTTGAACGATATGTTAGGTGTACTTGGGGCCTCAACATGTATAGGTATCATGTGTTTCGTGCAAACCTGCCAGACACATTTGTGTTGGAGATCAATTGAATCAATGAACCTTTGGATATTGCGGTAGAAACCATTGATTTGAAAGAGTATAGAGATAACTTTAAGTCGTCAGAAAAGCTGAACAAGCCTATTGAAGAAAATGAATATCCTCGTTGGATCTGGTTTTACGGTGTTTAAGCATTAAGGGACACGAATTATGCAGGTTGGTTACATAGTCGACTAACAGTCCGATCAATAGATAACTTACGAGTTATCTTTGTTGTTGAGTCTAATGACGATT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCTGCCGAATAGGCAGCCAAGAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //