Array 1 9777-7466 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANY010000011.1 Vibrio cholerae strain C19c.a Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9776 28 100.0 32 ............................ TGCGGTTACTTCTGTGTTTGATACGCTTTGAA 9716 28 100.0 32 ............................ TAAGCAAGAGTCGCAAAGCCACGATAAAATGC 9656 28 100.0 32 ............................ TGCGCCGATGGATATAAATGCTCTTTGGAACG 9596 28 100.0 32 ............................ AATACTGAAAAGTTAACGCGATAGTACGTTTT 9536 28 100.0 32 ............................ TTGATGAGTGGTTCATAGCTCATGGTTTCCCC 9476 28 100.0 32 ............................ AATTGATGTTCTCGATCGCTGCACGTCAGTTC 9416 28 100.0 32 ............................ GTTGATTAGTAACTGCTCAGAGCCACTGTTGC 9356 28 100.0 32 ............................ TCTCTATGGCTCCGATTCTCTCGCGGCCTTAA 9296 28 100.0 32 ............................ CTCAAGAATCGTGAAATAATCTTCCTTGCTCC 9236 28 100.0 32 ............................ ACAACAAGAAGAACGGTGGTTCTCTTCAAAAT 9176 28 100.0 32 ............................ AATATGGAGCATGAATACGCCAAGGATATTGG 9116 28 100.0 32 ............................ AGTTTGCAAAAACTATCGGCATTGGCCCTAAC 9056 28 100.0 32 ............................ TGACTTAGGCCACTTTTGACGACTTGCACCGG 8996 28 100.0 32 ............................ CAGAATCTACTTTTTTCACCTTGACCAACTAG 8936 28 100.0 32 ............................ ATAGAAAGAGAGGTTAACAAAGGCAACGTTGA 8876 28 100.0 32 ............................ CAAAGGATCACGTTTTTCTCAGCGACTTGCCT 8816 28 100.0 32 ............................ GTTTGCTGAAATCATCGAAGCAGTTGAAGAAA 8756 28 100.0 33 ............................ CCTAGGGATTCCATCAGCCACGCGCTGCTCAAT 8695 28 100.0 33 ............................ AGTAAATGGGTTTTTCATCGAGCAGCTTTAACA 8634 28 100.0 32 ............................ GCTCAAGAAAAAAGAGCGCGAGCAAGTCCGTG 8574 28 100.0 32 ............................ ATTACCACGATCCCATTGCTCGGAACCCCATT 8514 28 100.0 32 ............................ GTGAGGATGACCCGATATGCACACAGCTCCGC 8454 28 100.0 32 ............................ TACTGGCGAGATATCCACATGAGCAAACCGAG 8394 28 100.0 32 ............................ ACCGTGCGCATCAGCAGAAAGAAACGAAACAT 8334 28 100.0 32 ............................ CGTGTAATCGACACCCGTCAAAGCGATAACAG 8274 28 100.0 32 ............................ TTTAGGGCGGGGCTGCATAGCAGGGCAAGTGG 8214 28 100.0 32 ............................ TGCACATCGAAGGGGTGCGCGATGTCGATTTG 8154 28 100.0 32 ............................ GTGATAAACGTTCATTTCGCTTGGATAGGTCA 8094 28 100.0 32 ............................ ATCCTAAAGGCACCTTGCCTGCTAACGTGGGC 8034 28 100.0 32 ............................ TTGCGAATACCTCGTTGATGGTGTAGATGCGG 7974 28 100.0 32 ............................ TGGCGACCATGTGTTATATGATCTCTTTGATT 7914 28 100.0 32 ............................ TGTCACGCTCTCAACGTAGTTCTTGGTAATGA 7854 28 100.0 32 ............................ AATAGGGGAAAATGAATGAAATACGCACAAGG 7794 28 100.0 32 ............................ TTTATTACCAGTCTTGGCAGGCTGTCCAGCTC 7734 28 100.0 32 ............................ GCGCTCCCACTTTGCTATGGTCTGCTGTGTAA 7674 28 100.0 32 ............................ AGATCGACACAGTAGTTGATTCGGTCAACTTG 7614 28 96.4 33 ...........T................ AGCACAAACCGCCGCTGATCACTTGGCGATTCA 7553 28 96.4 32 ...........T................ CGTAGGCTGGTTTATGCAGGCTTTTGGGCTGG 7493 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 39 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : TCTGCTTTCCCCATCATATGGGTTATCTATGTGATGGGGATTCGCTCGCTAGCGGCCTGCCTGTGAATCCAAGTGGTATGTGTCTGGTACGCAAGGTTTTTCTGTACCCCAAGCTGTGCCCAGAGCGATTGGTTTATAAAGGAAATCCTGTTGATCTCCTTATCTAATGCGCTCTAGCATCACACCTGCTTCCATATGGTGGGTGTAAGGGAATTGGTCGAAGAGAGCAAAACGCACCACTTGATGGGTTTCCCCCAAGACTTGTAAATTCTCTTGCAGCGTTTCTGGGTTACAAGAGATGTAGATAATGCGCTCATAACCTTGCACCATTTTACAGGTGTCGATATCCATGCCAGAGCGTGGTGGGTCGACAAAAATAGTGTTGCAGCGGTAGCTTTGTAGATCGACTCCCGCATCCTTCAAGCGATTGAATTCGCGTTTACCTTCCATCGCCTGAGTAAACTCTTCTGCTGACATGCGAATGATCTGCACGTTGCCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3297-3029 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANY010000029.1 Vibrio cholerae strain C19c.a Scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3296 28 100.0 32 ............................ CAAAGGAAAACGCCCCCGTTAGGAGGCGTTCA 3236 28 100.0 32 ............................ TCAACTGGGGTGTGCAAGAGCACTACCCGAAA 3176 28 100.0 32 ............................ ATCGCCAGAGGCCGACACTGACACCAAATCGT 3116 28 100.0 32 ............................ ACTATCTGTAACTGTTACAATGTTAGCCATAG 3056 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTGCTGATTGATCAGAATCATCAAGGTTTAGGTATTGCGAGTAAAGCAATGAATTTGTTACCAAGCTATGTTATTTCAAACTATCCAGGGTTTGAGCGGTTACAATTGACAGTAAATTATCGCAATAAAGCTGCGTACAATTTTTATCTTAAATGTGGTTTTGAAGATACAGGGAATTTGTATTTAGGTGGTCCAGTTGGTTCTCAACATATAATGCAGAGAACCGCCGCCTAACAAGGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCGTTGATTTTATTGGTTTTTAGTGCAATGCGGTGAGTTGGTCGTTGCGTTACTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTCCCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAGATCGAGTGAGAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCATTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATAAGCACAAGGAGATATCATGCAAATCGAATGTCCATCCTGTAAAACAGATAATCATATTGATTATTCTGAAAATATTATTTGTGTCAATTGTAAGAAATCGTTTACTGGTCATGTATTTCAAAAGATTAAAAAGCCATTGGTTTCGTCAACAGCTGCTTTGTTCATTGGCATTTATGGTACATATAAAATAGACAACCATTTTTTTGATGAGCAAAGGCTTCCGATTCCGATTGAATATGAATTAATTGATAGTTGTGTTAATTCATCAAATGGAGTGTTGCGAGATTCAAAATATATCTTAAAGAAAAAAATATGCTCATGTGCACTTGAACAGACATTACTAGA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3514-241 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANY010000031.1 Vibrio cholerae strain C19c.a Scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3513 28 100.0 32 ............................ GCCTTGGGATACCTGACCTTACATCAGCCCCT 3453 28 100.0 32 ............................ TGCTGACTCTGCTAGAAAAATTGCTTGCTCAT 3393 28 100.0 32 ............................ CATCAATGACCTCATTGGTTAATGAGGTTTGG 3333 28 100.0 32 ............................ ACCAAGGCCAAACGCCCCAGTCAGCATTAGCT 3273 28 100.0 32 ............................ GCACCCGCATCACTGGCGATGCGGCCAATGGC 3213 28 100.0 32 ............................ AATACCAAGCCCTGTGGCATCAATACAAATAC 3153 28 100.0 32 ............................ ATACTTCCCGACACGAACCGGAATGCCGAACA 3093 28 100.0 32 ............................ TATCACTTCATCACTACCGAATCGCTGGAGGT 3033 28 100.0 32 ............................ GCTCAACTGCAAATATTGCCCTGCCTCGTGGG 2973 28 100.0 32 ............................ AATAGAGATACAGTGACGTTTTCGTGTGTCAG 2913 28 100.0 32 ............................ AACAGTTTACATTGTGGTGGCAACTCCTGTCG 2853 28 100.0 32 ............................ GAATGGATAGCCTATATTCGCTTGCTAGGTAA 2793 28 100.0 32 ............................ AAACAGGAAAAACAAGATGCGGCCATCTACGA 2733 28 100.0 33 ............................ TCATTACCGCCGCATTCAACCGCCCACTAGCAT 2672 28 100.0 32 ............................ TCTCGATGAAATTGAGCGCCGCTTTGATATGC 2612 28 100.0 32 ............................ TGACTGGGGTCAAATTGATACGGCAATTAGAG 2552 28 100.0 32 ............................ AGTCGCATTTGGTCCACGCATAGCGGCGCTCA 2492 28 100.0 32 ............................ CTCATCGGCTCAAAACTGGTGACTTCACCACC 2432 28 100.0 32 ............................ GCTGCGTATCGAACCTACTTACGCCAAGCGTT 2372 28 100.0 32 ............................ GCTGCGTATCGAACCTACTTACGCCAAGCGTT 2312 28 100.0 32 ............................ CAAACGGAACCCTCTACAACCAATCTAATGTC 2252 28 100.0 32 ............................ TGTTGCGTGTAAAGTGCGGCAGCGCAAAGGCT 2192 28 100.0 32 ............................ GTATCAAAGAGCACGGTGAGCAGACTAAACAT 2132 28 100.0 32 ............................ ATTAACGATTCGGCTTGATGCAACAAAAGGCG 2072 28 100.0 32 ............................ AACCCAATCGGTAAATGTCTCGCGAACGTAAT 2012 28 100.0 32 ............................ GATTGCAGATCGGTTTGATAGGCCTTGGTGAT 1952 28 100.0 32 ............................ TGGAGCTACTGGTGCAATCAAAGCGTGCGCAC 1892 28 100.0 32 ............................ AGCGAGCTGCACCGCATACCACTCACAAAAAC 1832 28 100.0 32 ............................ GCGTACCATGTGTATCCTGTTGCGCCATTTCC 1772 28 100.0 32 ............................ AGACGAAGATATTGTCGAGAACGCACCAACAC 1712 28 100.0 33 ............................ AATCATCGTAAGTCCAGATATCAAGGCCTGAAT 1651 28 100.0 33 ............................ CAGTTCTGGCGCAGTGTGTTCACGTCCCATTTA 1590 28 100.0 32 ............................ CGACAACGGACCTGCTGGATGGTATTGCGCGT 1530 28 100.0 32 ............................ AGTGAATGAGTTATGGGCTCAAGTTGAAGAAT 1470 28 100.0 32 ............................ ATTGCGCAATGGCTTATTGAAATCGAGTACAG 1410 28 100.0 32 ............................ GTGCTGAAAGATGGCTCAGAAGTTTGGCTGGC 1350 28 100.0 32 ............................ GTGAAGAGGCGATGGCCGCTGAAGCTTTGTTT 1290 28 100.0 33 ............................ TGGGGGCAGGTAAAGTGGAGAAAAGATCCGGAA 1229 28 100.0 32 ............................ TTCTGGAACTTCGCAGTTGTAGTATTCACGGC 1169 28 100.0 32 ............................ AATTTCCAGCGCTGCATCAAGTGACATTACTT 1109 28 100.0 32 ............................ AAGCTTGAGACTGGTAAATATCAAGACCATTC 1049 28 100.0 32 ............................ TTTTGCGATTTTCCTTGATTGGTCATTTGGCC 989 28 100.0 32 ............................ TTGATAGCCATGCTTTTGCAAAAATCGTTTTC 929 28 100.0 32 ............................ TTTAATGGTTTTCTTTGCCGTTCTTAGCCCTA 869 28 100.0 32 ............................ TTTTGTTTTTGTTTCCAATACGTCAGGCGAAG 809 28 100.0 33 ............................ AAGACATTGCAAACAAGCACGTGGGCGATCTAT 748 28 100.0 32 ............................ ACCGTCATCTTCACTGAACATGATGGTGTTGA 688 28 100.0 32 ............................ TTTAGGGAAGTAATATTGCAAACCGCCCGTGT 628 28 100.0 32 ............................ ACTTACAAGTCAGCTCGCACGACGCCTCAGCC 568 28 100.0 32 ............................ GTCATGTGCATTTTTATAATGCGACTGGTGGT 508 28 100.0 32 ............................ TGTTACGGCAGCGAAGATTGGTGATTCGGCTG 448 28 100.0 32 ............................ TACAACTAACTTTTTAAGCTTCTTTGCTGCTT 388 28 100.0 32 ............................ TGTATCTTTGAGAACGCCACACTCAACCAGCT 328 28 100.0 32 ............................ ATCCGGCACAGTCGAAGAAATCGGCTGATTAA 268 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 55 28 99.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TTCAAGCTTATCCATCATGATCTCGTAGGTGCTTGCAGGGACGCAGTAGAAAGCCGGCTCATTTCGGTTGAGTACAGCAACAGGAGCACCGAAGGCGCTAGTTGCAACTTTCATTGGGTTTGCTTTAAATTCGGTAATGCTTGCTGCAACATCAGCTAGGATTCTAGTGGTCATTTAATCAGTCCTTTATGTGGTCTTTAATTGGGTCATTATAGTCTTGAAAATGCAGTTTAACAAACGCCTCAAGAGGGACTGTCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGTAGTGGTTACGGTTGTTGTGTTTGAGTTTAGTGTTATGCGTTGTCAGCCCCTTAGGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : ATATTTATAACTTAGGCATTTGGGATCGGCCAGTTAACAAACGCCTTAAAGGGACTGCCAACGCGTGGCGTTTCCAGTCCCATTGAGCCGCGGTGGTTATGGTTGTTGTGATTGAGTTTAGTGGTAATGCGTTGTCAGCCCCTTAGGCGGGCGTTAGCTTCTTAAAGGCTAAAATCATCAAAATCCCAACTTCTTGTTCAGAAAAATCAGCTTTTAGTGTTCAAATTGCACAATTTGGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 600-272 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANY010000041.1 Vibrio cholerae strain C19c.a Scaffold41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 599 28 100.0 32 ............................ CAAAGGAAAACGCCCCCGTTAGGAGGCGTTCA 539 28 100.0 32 ............................ TCAACTGGGGTGTGCAAGAGCACTACCCGAAA 479 28 100.0 32 ............................ ATCGCCAGAGGCCGACACTGACACCAAATCGT 419 28 100.0 32 ............................ TATGGCCGCGACGTTAACGGCGTGATTGAAAT 359 28 100.0 32 ............................ ACTATCTGTAACTGTTACAATGTTAGCCATAG 299 28 92.9 0 .............C..........A... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTGCTGATTGATCAGAATCATCAAGGTTTAGGTATTGCGAGTAAAGCAATGAATTTGTTACCAAGCTATGTTATTTCAAACTATCCAGGGTTTGAGCGGTTACAATTGACAGTAAATTATCGCAATAAAGCTGCGTACAATTTTTATCTTAAATGTGGTTTTGAAGATACAGGGAATTTGTATTTAGGTGGTCCAGTTGGTTCTCAACATATAATGCAGAGAACCGCCGCCTAACAAGGCGTTAAAGAGGGATTCGCAACGCGTAGCATTTTCATTATGCGTTGATTTTATTGGTTTTTAGTGCAATGCGGTGAGTTGGTCGTTGCGTTACTCACCCCTTAACGCGGCGTTAACTGGCAATGAAATTCCCCATCTTTTTTCGTTGAATTTTAAGTTATTGATTTATATTAATAATAGATCGAGTGAGAAATAAAAGGTTATTTTGAGAAATTTGATGTAATTACCATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : AATGGGTAATTTTGGCATTTGGGATCGGCCAGTTAACAAAGCGTTCAAGAGGGATTCGCAACGCGTAGCATTTTCGTTATGCATTGATTTTATTGGTTTTTAGTGTAATGCGGTGAGTTGGTAGTTGCGTTACTCACCCCTTAACGCGGCGTTATAAGCACAAGGAGATATCATGCAAATCGAATGTCCATCCTGTAAAACAGATAATCATATTGATTATTCTGAAAATATTATTTGTGTCAATTGTAAGAAATCGTTTACTGGTCATGTAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1547-18 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHANY010000054.1 Vibrio cholerae strain C19c.a Scaffold54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1546 28 100.0 32 ............................ GAGTTTGAGCAATACCTTGCTGTTCACTATGG 1486 28 100.0 32 ............................ TCTCGATGAAATTGAGCGTCGCTTTGATATGC 1426 28 100.0 32 ............................ TGCCATCCCTATTTGAGCAGCTAAAACACTCA 1366 28 100.0 32 ............................ ACCAAGGCTAACTGGCCGAGCGCTTTGGGTGA 1306 28 100.0 32 ............................ AAGTGGGATGCGCGCCAACTCGAATCTTGCAT 1246 28 100.0 32 ............................ TTTGGTGAAAACAAGGCAACCAATACAGTTTG 1186 28 100.0 32 ............................ ATCCTGCGCTGACCTTTGCCGACTTCTTCGGT 1126 28 100.0 32 ............................ TCGACTTCGCATCTTTGTCCATTGATTTCGAT 1066 28 100.0 32 ............................ ATCGACTTTTCAAGCGCGCTCGTAACCTTGCT 1006 28 100.0 32 ............................ TCATCGCGCTGGCAGCGACGACTGTACCCATA 946 28 100.0 33 ............................ CCTGTGTATTGCTGCATCAGCGATTTAGTGCTT 885 28 100.0 32 ............................ AGTTTGTCAGTAAAAAGCTCAGATCCGTAATT 825 28 100.0 32 ............................ CAGTTAATTGCTCTTCCTCAAGCTTGAGAACG 765 28 100.0 32 ............................ ATCGACACCTACAGTTTGTCAGGAAGCATTTT 705 28 100.0 32 ............................ GTCCTGAAGTAAAGGATCCTTTCGAAAATATT 645 28 100.0 32 ............................ AGCGTCCGCCATTTGTGAAGGAGTCAAAAAAA 585 28 100.0 32 ............................ TCTCAAAATCAAATGAAAAATGTTCGAGTTTC 525 28 100.0 32 ............................ TCGTTTCGATACCAAATCAGGTCAGGGTCAGT 465 28 100.0 32 ............................ TGTTACGGCAGCGAAGATTGGTGATTCGGCTG 405 28 100.0 32 ............................ TGTTACGGCAGCGAAGATTGGTGATTCGGCTG 345 28 100.0 32 ............................ TACAACTAACTTTTTAAGCTTCTTTGCTGCTT 285 28 100.0 32 ............................ TTCTTGTTGCATTTTTACCGCTTGCATTAGCT 225 28 100.0 32 ............................ GTACCCGGCTCTGCCGCTGCTGCTATCACTTC 165 28 100.0 32 ............................ ATATGCGCGACTTAGTATCTCTTCCTGACATT 105 28 100.0 32 ............................ TGTATCTTTGAGAACGCCACACTCAACCAGCT 45 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 26 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGGACTGCCAACGCGTGGCGTTTCCAGTCCCAATGAGCCGCGGTGGTAGCAGTTGTTGTGTTTGAGTTTGGCGTTAATGCGTTGCCAGCCCCTTAGGCGGACGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAATTTTAAGTTGTTGATTTATATTAATAATAAATTGAGTAAAAAATAAAAGGTTGTTTTGAGAAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCAT # Right flank : AATCCGGCACAGTCGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [11.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //