Array 1 163263-161420 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPNR01000002.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain s03 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163262 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 163201 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163140 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163079 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163018 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 162957 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162896 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162834 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162773 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162712 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162651 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162590 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162529 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162468 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162407 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 162346 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162285 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162224 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162163 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162101 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161998 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161937 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161876 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161815 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161754 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161693 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 161632 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 161571 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 161510 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 161449 29 96.6 0 A............................ | A [161422] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180337-179394 **** Predicted by CRISPRDetect 2.4 *** >NZ_SPNR01000002.1 Salmonella enterica subsp. enterica serovar 4,12:i:- strain s03 scaffold_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180336 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 180275 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 180214 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 180153 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 180092 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 180031 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 179970 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 179909 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 179848 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 179787 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 179726 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 179665 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 179604 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 179543 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 179482 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 179421 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //