Array 1 4322046-4324148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028357.1 Salmonella enterica subsp. enterica serovar Kentucky strain 201001922 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4322046 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 4322107 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 4322168 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 4322229 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 4322291 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 4322352 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 4322413 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 4322474 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 4322535 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 4322596 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 4322657 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 4322718 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 4322779 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 4322840 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 4322901 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 4322962 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 4323023 29 100.0 32 ............................. GCGTCAACCAGTTCTGGCATACCCTCCTCTTC 4323084 29 100.0 32 ............................. ATTAGCTGATAAATCATCCAACATGTCACTTA 4323145 29 100.0 32 ............................. AGTCGCTGGCGGATGTGCGGCGCACCGAAGCC 4323206 29 96.6 32 ..G.......................... CACATAACCCGGCGCGATGGCCGATACATCAT 4323267 29 96.6 32 ..G.......................... CGAGAGATCATAGACCAATGGACTGAAAGACT 4323328 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 4323389 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 4323450 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 4323511 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 4323572 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 4323633 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 4323694 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 4323755 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 4323816 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 4323877 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 4323938 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 4323999 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 4324060 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 4324121 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.7 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.78, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 4341781-4343762 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028357.1 Salmonella enterica subsp. enterica serovar Kentucky strain 201001922 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4341781 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 4341842 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 4341903 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 4341964 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 4342025 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 4342086 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 4342147 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 4342208 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 4342269 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 4342330 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 4342391 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 4342452 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 4342513 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 4342574 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 4342635 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 4342696 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 4342757 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 4342818 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 4342879 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 4342940 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 4343001 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 4343062 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 4343123 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 4343184 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 4343245 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 4343306 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 4343367 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 4343428 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 4343489 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 4343550 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 4343611 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 4343672 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 4343733 29 100.0 0 ............................. | A [4343760] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //