Array 1 644279-645405 **** Predicted by CRISPRDetect 2.4 *** >NC_013928.1 Streptococcus mutans NN2025, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 644279 28 100.0 33 ............................ TGGGTCTGACACCCAGTCACCCAAAGCTTTGAG 644340 28 100.0 33 ............................ TAGTTCAACCGCTTATCTTTACAGCAAAGAAAA 644401 28 100.0 33 ............................ TGCTTGGAAAGATTGACCACACAGGGTCAGGCG 644462 28 100.0 33 ............................ TACTTGACAGCGCAGTGCGCGCTGTTGAATAGC 644523 28 100.0 33 ............................ CAGCTCCAACAGCTACAACAGCTACAACAGCTA 644584 28 100.0 33 ............................ TGGTAAGGAGGTGCGATTATATGCAAGAGTTAG 644645 28 100.0 33 ............................ TCATGCGCCAGTATATTATCAGGTCGTGGAATA 644706 28 100.0 33 ............................ TAAAATATACTTCTTTTGTGAAAGGGTTGAGAT 644767 28 100.0 34 ............................ TTTGATTTTCATTATCGCGGTCTGATGGCTTAAA 644829 28 100.0 33 ............................ CCGGCTGACAAGCCTAAAATTGTTAATGTTTTC 644890 28 100.0 33 ............................ TAACTCGCTAGCTTTTTTAGATACATAGCTCTT 644951 28 100.0 33 ............................ TTACTGGAGACTCCGCTTATCCCTTTTTTGATG 645012 28 100.0 33 ............................ TAGTTTTCGTGCGATTGCTTCCAAAATTTGAAA 645073 28 100.0 33 ............................ CATATACGACAGTCTGAAAGAAGGCTACCGCGG 645134 28 100.0 33 ............................ TGACCTCAGTTGCTATCCTCTTTTTTATTGTTG 645195 28 100.0 33 ............................ TGACGGCAACGATAGCCCTGAGACTGACAATCG 645256 28 100.0 33 ............................ TGTTTTCCTACCTCTTACCAAGGTTTTTTCTAA 645317 28 96.4 33 ...................A........ TGCCGTTGGGTCAATGCCGTTAGCTTTTAAAGA 645378 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 19 28 99.8 33 ATTTTACCCGCACGAGCGGGGGTGATCC # Left flank : GAAAATGAAAATAGCATCATAGAAATTGGCGCTGTCAAGATTGATCCCTCTCAATTGGAAGAGTTTAATTATCTTGTAAAATATGATAAAATTCTACCAAAACAGATATCGAAATTAACAGGAATTAGTCAGGAACTTTTGGATCGTGATGGTAAAGACCTTCAAGTTGTACTTCAGGAATTTTTGAATTTTATCGGAAATCACGATCTTGTCGGATATGGGATAAATTTTGATATAAAATTTATAAATAAAAAGTTGAAAGAATTAAATCAGCCCTTATTGAAAAATCGAGTATATGACTTAATGCAATACGCTAAAAAAGAAAAATTATTTTTAGATAATTATAAATTGCAGACGGTATTAAAAGCATACGAAATAGAGGATGAGGTGCCTCATAGAGCTCTTCACGATTCTAAACTGATTTATGACTTGTCAACTAAAATGAATAAATTTTTGAAAGGGATCAATCAGAAGTAGCGGTTTTATTGGGATCTTTTAGT # Right flank : CCAGTGACAACAACGAATCAGATACAGAAATCATGTTTTACCTATACATATAGACTTGTGATGTTAGACCGATTGAAATTGATTCTTTTGGATAGAAGGAAATCAAATATATATATTTAAGTGGATGACAATAAAAGTAAAATGTTAGATAATAGAGATTAAGAATTATAAAGAATTGGAAAATGTTTAGTCGTCAAACCTAAAATCATTATAATGATACGAATATTTTTTTGATCAATTTTGTGATAATATAAAGAAGTGACATGCTTACCAATTATTTCAATCTGATAGAGGTAATAATGAAACTTTTATATACCGACATTCCATACAACATAACAGAGATTTTGGCCGAGGAAGCACAAATAGCTGCTAAGGCTGGCAAGCGGGTCTTTTATATTGCTCCCAACTCCTTGTCTTTTGAGAAGGAGCGAGCTGTTTTGGAGACCCTGCCTGAGCGGGCTTCCTTTGCTATTACCATTACGCGTTTTGAGCAAATGGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTACCCGCACGAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 743991-748647 **** Predicted by CRISPRDetect 2.4 *** >NC_013928.1 Streptococcus mutans NN2025, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 743991 36 100.0 30 .................................... CAAAAGGGTTTCTAATCCCATTCGAAAGCG 744057 36 100.0 30 .................................... GATTGTGCCCGCTAGTAAACCGCCTCGCGC 744123 36 100.0 30 .................................... CCAAGCTATGCAGTCACGCCTGACCCTGTG 744189 36 100.0 30 .................................... TAGAGTTGAAAAAAACACTACAGGCGAAAA 744255 36 100.0 30 .................................... TAATACTTCCTCAATTATAAATTCAATTCT 744321 36 100.0 30 .................................... GATTGTATCAGTAATCGAACTTCTGCTTAT 744387 36 100.0 30 .................................... GTTGCTTATGCAGATGATAACACAGGCGCA 744453 36 100.0 30 .................................... TGGTCCAAAGTGCAGAGCCAAAGAAAAACA 744519 36 100.0 30 .................................... ATTGTCAATCGCCGTTCTGCGCTTGCGACG 744585 36 100.0 30 .................................... CTCTAGCGCTTATTTCGAGGACAGCGGAGC 744651 36 100.0 30 .................................... TCATTGCTCTTGACATCAATAACTTTTTCA 744717 36 100.0 30 .................................... GAGCAAAATCAACTATCTCAAAGCTTAGTT 744783 36 100.0 30 .................................... TGGCAATTTACCAGCACAGCAATTGCTGGC 744849 36 100.0 30 .................................... TTCGCGGTCTACTTTTTTTGATATGCTAAT 744915 36 100.0 30 .................................... AAAGAATAAGTTCTCTCACAATGTTTGAAA 744981 36 100.0 30 .................................... CAGGTTTCATCTTAGGAAACGTATTGATGA 745047 36 100.0 30 .................................... GCTTGAATATAATTGTGTATCCGCCAATGA 745113 36 100.0 30 .................................... ACCTTGTGGTCCGTCTTCTCCGCCACTTTC 745179 36 100.0 30 .................................... CAAACGGCGGTTTGACTGACTCAGGAATTT 745245 36 100.0 30 .................................... GATTAAAAACATAGATGAAAACGGCTATTT 745311 36 100.0 30 .................................... ATCCACAGGCACAGAATTAGTGTTAATCCA 745377 36 100.0 30 .................................... TTGACCGTGATAAAGTGTTCAACCACACGT 745443 36 100.0 30 .................................... AAAAAGAAACGCCTTTTGATTTGACCAATC 745509 36 100.0 30 .................................... CAATGCTAGTTAAGCTCTTGATGCTTTGAG 745575 36 100.0 30 .................................... CCACTCTTGCTCCTGATTGGTCAAATCAAA 745641 36 100.0 30 .................................... GTTCCATTGAACGCATTGATGGGAACAACA 745707 36 100.0 30 .................................... CGTTACTGGTGTTCACGGCGACAGCATGGA 745773 36 100.0 30 .................................... ATGAAAAGCCTCGTTTCTAAGGCTTTTGGT 745839 36 100.0 30 .................................... AGTTATTAATATCTATGACAGTCTCAAAGA 745905 36 100.0 30 .................................... CGGATATAGCCTAGCATATAATCGCGTGTG 745971 36 100.0 30 .................................... TTCAATCGGTGATGATATTGTCTGCTATCA 746037 36 100.0 30 .................................... AATGTATGCACCGCGTTTTTTAACAAAATA 746103 36 100.0 30 .................................... GTTTGCTTTTGTTTTTGCCTTGTGTGTTTC 746169 36 100.0 30 .................................... ATAAAGACGAATATAAAGACCCGAGCACTT 746235 36 100.0 30 .................................... TAGACACGGTTGCTAAAACAAAGAAGGTTA 746301 36 100.0 30 .................................... TAATATTATTGAGCAAAAATCCTTTAACTC 746367 36 100.0 30 .................................... TTCTGGCTGTCTTTCAGAGTGATAAGCGCA 746433 36 100.0 30 .................................... GTATCAATACAATCTTAGACGCTCGCACTG 746499 36 100.0 30 .................................... CGCCGGTTACAACCGGTTGAACGCCTGCGT 746565 36 100.0 30 .................................... TGCAAGTTATCTTGCTATGTGGACGAATTG 746631 36 100.0 30 .................................... TGACGGAAACAGAGACGGAACGGCAACTGT 746697 36 100.0 30 .................................... GCACTACAAGACGGCTATTGCTGATGAAGT 746763 36 100.0 30 .................................... GCAATTTAGTTTTATTCCGTGGGAGCAGCA 746829 36 100.0 31 .................................... CGATAAAATTTTGCTAACCCGGAAAGCGGTT 746896 36 100.0 30 .................................... AATTGTTACTCCCAACTTCAGCATTGACCA 746962 36 100.0 30 .................................... CTCTGCGCTTTGCACGAGCACAGCGATATC 747028 36 100.0 30 .................................... TGGCCATGACGATGACGGGACTAAGACTGT 747094 36 100.0 30 .................................... AGAGTATAGCCAGTGTTTTCAAGGCCTTTA 747160 36 100.0 30 .................................... CGCAACAATGACTATTAATATCAACGGTGG 747226 36 100.0 30 .................................... ATCAAATTTCGCTTCTGGAGCAATCTCAAC 747292 36 100.0 30 .................................... AAGAACTCTTAGAAAATATGGTCCACTCAT 747358 36 100.0 30 .................................... CAGTATACGCCATATTCCATCAGGATGACT 747424 36 100.0 30 .................................... CGATAAAGCTACTGTAGCAATTAAAGGCTA 747490 36 100.0 30 .................................... TTTCTGTTTTAGCTGAGTTAAGTGCCTTCT 747556 36 100.0 30 .................................... TTAAAAAGCTGACAAAAGACAGCAATGAGA 747622 36 100.0 30 .................................... AATCGCTTCTTTGCTAACCACAATTTGTGC 747688 36 100.0 30 .................................... TTAAAAAGCTGACAAAAGACAGCAATGAGA 747754 36 100.0 30 .................................... TATATGTGATGGCAGTTGAAAACATACGTA 747820 36 100.0 30 .................................... TTGCAATTGAGGGCAAACGTAGTGAATTGC 747886 36 100.0 30 .................................... AAATGCTCTTGAAGAACCTGATAGATGACA 747952 36 100.0 30 .................................... TCAGATAAAGATTTTTTTGGAAAGTACAAT 748018 36 100.0 30 .................................... TATTAAATTACTTGTAATTACAAAGCCTAA 748084 36 100.0 30 .................................... ATTAGAGAGCAGATGCAATCACCCGTTATG 748150 36 100.0 30 .................................... TAGAGCTCTTAGTTTTTTACGCGTTGGGCC 748216 36 100.0 31 .................................... CAAATTTGCCGGCGGGGTCGGTAAAACGGTC 748283 36 100.0 30 .................................... TGCAAAAGATGGCCTCGAGCAATTATCGCA 748349 36 100.0 30 .................................... GAAAAGGAAAATCTTACTTAGCTCATGAGT 748415 36 100.0 30 .................................... CTGACCAAGAGAATTAATTCTAAAGATAAA 748481 36 100.0 30 .................................... CTGACCAAGAGAATTAATTCTAAAGATAAA 748547 36 100.0 29 .................................... GGCACATATAATCCGTAAAGGCGGCACAT 748612 35 75.0 0 ..........CA.......A.TG..-T.A.T..... | A [748628] ========== ====== ====== ====== ==================================== =============================== ================== 71 36 99.6 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAAGCTTTGGAAAGGAAACTACAATTATAAAACAAGAAAAGCGCTAGAAAGATTGATTTCTAGCGCTTTTTTAGGTATAATATAATTAATTAAAATCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : CACATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //