Array 1 240934-244808 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJEI01000006.1 Legionella pneumophila strain 2531STDY5467440, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 240934 28 100.0 32 ............................ AACATTACTAGACAGAATAAATATTTTGATAG 240994 28 100.0 32 ............................ TAAAAAATGGCTTTCAATGTGTAAATGTTATA 241054 28 100.0 32 ............................ TGTAAAAGCTTTATATTTGCCCTGTATTAAAC 241114 28 100.0 32 ............................ CTTATTTTTAGGCCGAAGTTTGTTATCTAGAA 241174 28 100.0 33 ............................ GGCATATACAGTAATGGGCTGGAAGGTTTATTG 241235 28 100.0 32 ............................ TAAATCATGTAAATCTGCTATGTGGTCATAAG 241295 28 100.0 32 ............................ TATCAATATTGCACTAGGGATACGTACGGATT 241355 28 100.0 32 ............................ TACAAATGTAACTGATGCTAAAAAGTTAGGTT 241415 28 100.0 32 ............................ ATCGTATTGTGTCTCCCAATAAGTAACTTTTT 241475 28 100.0 34 ............................ TGACATATAGATTTCGCAGCATCAGCATAACTTT 241537 28 100.0 32 ............................ TAACACTTTAACCATTCTTTCCCACGCATCTG 241597 28 100.0 32 ............................ ACTTCCTGCTTAGGTCGAGCAAAAAAGTTTTG 241657 28 100.0 32 ............................ CCACAGGTATTGTTTCAATTGTATCGGACACG 241717 28 100.0 32 ............................ TTGCGAATAAGATGCATCATAAAACTTGCCTG 241777 28 100.0 32 ............................ AAATCCTCACTTTTCAATTTCTTATTTAATAA 241837 28 100.0 32 ............................ TGAAACTCACCATTTTTTAATAAAGGTTGGTT 241897 28 100.0 32 ............................ TAAAAAGCATGTTTTGTTAAAATGAGGAGATA 241957 28 100.0 32 ............................ ATTTGCATAACCAGTATCCGCAGGACTAGTCA 242017 28 100.0 33 ............................ CGATTGGGTAAAAGAAGTACCAGAAGGCTATCA 242078 28 100.0 32 ............................ TTGCAGCCAAATCAAATTTATTATCGTGAGCC 242138 28 100.0 32 ............................ GCATGGGCACCGAAAGGAACAGCAGACATTAC 242198 28 100.0 32 ............................ TATAAGAATTACTGCTTTAGCCCAGCTTATTG 242258 28 100.0 32 ............................ TAAAAGATTTTTATGTGGTAACTGTCATTAAA 242318 28 100.0 32 ............................ GATAATGGGTTTGCTCGAAAAGAAGATAATGC 242378 28 100.0 32 ............................ GGAAAATTGTTCCAGCCTCTTCGTTTCTAAAA 242438 28 100.0 32 ............................ GTTACCGCAGCACCTAAATTGAATTCTTGTTT 242498 28 100.0 32 ............................ TACGCAGGTTGCTTCTTTGGTTCATAATAGTC 242558 28 100.0 32 ............................ TAAAGTAGCTGCCAGCATAGGATTAATACCCG 242618 28 100.0 32 ............................ TGATGATTCTACGGATTATTTAGTTCCCACGA 242678 28 100.0 32 ............................ TATTACTGAGGCGGGGAAAAGATAATGGCAAA 242738 28 100.0 32 ............................ TATCGCGTTTATTATGTGCACTTTTTCAAACT 242798 28 100.0 32 ............................ TAACGTAGACACACTAATAAAAGCAGGTAAAA 242858 28 100.0 32 ............................ AGATCCGGGCGGAGAAAAAGGAGCTACTAAAC 242918 28 100.0 32 ............................ AATTCTCAGAAATAAATAAATGTTTATTTATA 242978 28 100.0 33 ............................ GGTAGACACTGGCCTTTTTAAATCCAATTGGGT 243039 28 100.0 32 ............................ ATTAAAAGCCTTGCTGCTGCATGTAGTCTATG 243099 28 100.0 32 ............................ AAGAAACCGGGGAAGTGAACGACGCATATCGC 243159 28 100.0 32 ............................ TGCTGAATTGCGCGTGAAATTCTTTCTGATAA 243219 28 100.0 32 ............................ AATCCTCAGCCCAATGATTTTCAGCATCAATT 243279 28 100.0 32 ............................ AATCACAAGTTTACGCCCACCTAAAGTTTTTA 243339 28 100.0 32 ............................ TATGACCTCCAATCTTCTTTCATGGTCATTAT 243399 28 100.0 32 ............................ TTATGATACGCAGGGCAATATATTGCGTAGAG 243459 28 100.0 32 ............................ TTGGGAAAATTCCCATATTGCTTTTGCACCAT 243519 28 100.0 32 ............................ AGCGTGACAAATTAATCAATAAGTACAATAAT 243579 28 100.0 32 ............................ TTGAAGAGTACATTGGATATTCAATTAGTGCT 243639 28 100.0 32 ............................ ATTGATTCATTAAGAGCTAATTTAGAGCAACC 243699 28 100.0 32 ............................ TCCTCCTAAGCCTGGCGCGCCTAACAATTCTA 243759 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 243819 28 100.0 32 ............................ TCATAAGGCTCTACCTCATCAAGTTCGATATT 243879 28 100.0 32 ............................ AATATGGATAAGGCTTAAATGGTCTGGTGCCC 243939 28 100.0 32 ............................ TTAGGGGATTGTATCGCCCCTGGCGACGGATA 243999 28 100.0 32 ............................ ATCATACTTCTTTTATCAACTTTTTGTGTTGC 244059 28 100.0 33 ............................ ATTATGGATGCTGTTGCAAAAGGCGAGCTCACG 244120 28 100.0 32 ............................ GCCTAAAAGCCGAGGCGGACGTGAATTTTTAT 244180 28 100.0 32 ............................ AATTAATGTTAATCCTGTACCTCAGACTAGTT 244240 28 100.0 32 ............................ AATTATCCCAAACAAGACGATACGGAACAGCA 244300 28 100.0 32 ............................ GCTTGCGCCATGCGCTTAACTATTGCCCTCTC 244360 28 100.0 32 ............................ ATACGCACAGCTTAATGAGTGTTATTGGCGCG 244420 28 100.0 32 ............................ TACAATCTTGTTTAATGATGAATTAGTCAATG 244480 28 100.0 32 ............................ TCTATCGTTGGCCTATGTCTTCCGTTAATCAT 244540 28 100.0 33 ............................ TTACAACATCGGCCGCCGCGACGGGAACAGTTC 244601 28 100.0 32 ............................ TATGAAAACGAACGACGTGAAACAGCGTAGGA 244661 28 100.0 32 ............................ TTACCACTTTTGGTATCATCATGTATCTGGAT 244721 28 100.0 32 ............................ AATAGAGACAGCCAAAAAGAACTGAAATTTGA 244781 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 65 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGGTGTCTCGTAAACAGCCTACAATGAGCCAATCAAAATTGAGGCGGTTAATTAAACGTAACTCCTTGACAGAAGATGAAATCAGGCAATACAAGGCAAAGATGTTTTCCAAAGGTCTGGATAATCCATATATTGAACTTGTGAGCGTATCAAACGGGCAAAGACACCGACGCTATATTGAGTTTGGCGAATTGTTCAATGAGCCAATTACGGGCCTCTTTGATCAGTTCGGCCTTTCTAACAGTGCTACTGTTCCATGGTTTGATTAAATTTTAGAACAAGGTAAATTCCTTGAGTTCGATAGGTTAAAGTAAGGAGATATAGTTTGGTCAAATGCTTCAATACTTGATTATTTCGATACTTCTAACGACCAATAAATTTAGTTCTTTAAAAATTTGTCTTAAAATCAATTGGTTATAAATTAGCTGAAAGATATTGGGTAAATCGATTTTTTTCAGCTAACTTTCTGTTGTAACTATTTTTTTAAGATTTATATTACA # Right flank : AATACGGCGAAATAGACGAAAGTGTCGTTGCTGAATATAAACTGATCCCCTTTGCCGACTGAAAATTGATCCCCCTACTATAGTTTTCTTCAGGAGAATGAATTCTGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [80.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 102-1752 **** Predicted by CRISPRDetect 2.4 *** >NZ_FJEI01000008.1 Legionella pneumophila strain 2531STDY5467440, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 102 28 100.0 32 ............................ GTCTTCGTGTGTAACCTCGTCTTTTTCGTCCT 162 28 100.0 32 ............................ CTATGAAGACGGTCTGCACGGAGAACTCGTTA 222 28 100.0 32 ............................ TGTAGCGGAATCAACGCCGTACGCCTCTGGTA 282 28 100.0 32 ............................ GATCAATCAGATAATCCACAAGACTACATTCG 342 28 100.0 32 ............................ TACGCCTCCGCTTGACGACTTTAAGCCCAAGG 402 28 96.4 32 ....................T....... TTATGTGCAAAAGGGCGGTAAGGCATGGCAAT 462 28 100.0 32 ............................ GCAACAAAAATGGCGCTAGAGGGCAACGAAAA 522 28 100.0 32 ............................ TATCGTCAACAGAGTCAAAGTATCGCCAGCAG 582 28 100.0 32 ............................ ACTTACCCCTCCAAGGGAGGTGGTGCGGACTC 642 28 100.0 32 ............................ AGCGCGTAAAAATCCTATCGAGAGGTCAAAAG 702 28 100.0 32 ............................ GATAACTGGCAAGACACCGCTTTTGCGTGGCG 762 28 100.0 32 ............................ TTACTCCCAGCTCAATGAGTGCTACTGGAGGG 822 28 100.0 32 ............................ GCTCTTCGATCGTCGGCCTATGTCTTCCGTTG 882 28 100.0 32 ............................ TTTGCAGCTCGGACATCTAATCATTTCCGTCG 942 28 100.0 32 ............................ TGTGCTAAAAGTTCCGTTTGCTGTTGCTTTGC 1002 28 100.0 32 ............................ GGCGACATAAAGCGAGACAAAGATGGCAACGA 1062 28 100.0 32 ............................ TACCAAGGTATTGCTGAAGCAATGGCCACTCA 1122 28 100.0 32 ............................ TTTTTCTCCGGCGGAATCTGGATCAAGCCATA 1182 28 100.0 32 ............................ TCACGGTCTATTGTGTCGCCCTCAATTTGTCA 1242 28 100.0 32 ............................ TATGTTCAGAACCAACTCACGAATATCTCTCT 1302 28 100.0 32 ............................ AACGGCTTGAAATAATCCTTGGGCATGCTCGG 1362 28 100.0 32 ............................ TCTTCTTGCTCTTCAACAGCTTGCTTAGTCTC 1422 28 100.0 33 ............................ ACTGATTTAACAGCACAGATGGAAGCATTGAAA 1483 28 100.0 32 ............................ TCTCTGTAGTTTTGTTCAAAAACAGGGTATGT 1543 28 100.0 32 ............................ AATACATCACCAATTTGAATATCTCTAATCGT 1603 28 100.0 34 ............................ ATTTAGACGAATTTGTCGCGGCCGATTTAAGTAT 1665 28 100.0 32 ............................ AAGTAAATCCAGACCAGATATACATTCTTATC 1725 28 67.9 0 .............T......TGGGTTGG | ========== ====== ====== ====== ============================ ================================== ================== 28 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAATAATATAACTGATTAATTTTTTTACCAGGAGGGATCAATTTTCATCTGGCAAAAGGATCAATTTTCAATCGGCATTGACACGAAAGTATAGACTTGAG # Right flank : GTATTGGTTAAGTCGTATAAGAGGAGTTAAATCGGTATAATTATCCGAAGAACTGGGATGGAAACTCATTAAAGAACTAATCCCTGATATTAAATCTAAAACGGCACATTATGAGCATGCGCTATTAACCAAAGGGCATGCAAGACCCTGTAGGGTAGTTACAACTTATCGTCAGCCCAAAGGGAGAAAAGTAAAGACATCACGAGGAAAAATACCTCAACATTATCCAATGGAAGTTATAGTCAAGCGAATAAGGAGCCTTGGATTTTAGCTACTAATTTACCCTTGGATGTAGGGCCTGTTGATATTATCAATCTCTATTTTAAAAAAATGCAAATAGAAGAATCATTTAGAGACGTTAAAAGTCATCAATTCGGACTGGCGGGGCGGTATCTGCGTACTCATTCAGTTAATAGATGGGGCGTTAAAATGCTTCTTGCTGCTATTGTGGAAATTACTTATTGGGTTATTGGAGTGATTGCCCATAGTCAAAATAAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //