Array 1 1015-254 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVG01000033.1 Aromatoleum anaerobium strain LuFRes1 NODE_33_length_41931_cov_17.7376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1014 29 100.0 32 ............................. ACGTCCCCGCCGGGACTGTTGATCGCGACCGT 953 29 100.0 32 ............................. CGGGAATTTTTGGTACGGGGTGCGCCGGTTGT 892 29 100.0 32 ............................. TCATGGCGTGGATTTTCGTCATTGGCCTTATC 831 29 100.0 32 ............................. CGAACTAATGTGCTGTTTCTTCTGGTTTTCTC 770 29 100.0 32 ............................. CGCGACGACCTGGCCGGCTGGAAACTGGCGCA 709 29 100.0 32 ............................. TCCGGGTCGCAGAACGCAGCCCCTTCGGGCAC 648 29 100.0 32 ............................. TAAGGCTCAGGCGAGGCGATCGAGCGGGCTGG 587 29 100.0 32 ............................. GTCGCCAGCTCGGGGATTCGGCCTCTGAGTGG 526 29 100.0 32 ............................. GTGAAGGAACAAGCCGAGGCGCTGGCATTCGT 465 29 100.0 32 ............................. TTCATCAATCACATGAGGAAATCGAAATGGCT 404 29 100.0 32 ............................. CTTGCGCTGCCAAAGCAGGTTTATTACCTGCT 343 29 100.0 32 ............................. ATTGCGCCGAACAGCTGCAGAAAGCCGTGCGC 282 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 100.0 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : GAGCGGATCATCCCGGACATCGAGGAAATCCTCGCTGCCGGCGAAATTCCGCGACCGGAAGCGCCTGAAAACGCTGTCGGCCCCGCCATTCCGAATCCGGAGAACTTGGGCGATGCTGGTCATCGTGCTTGAAAACGCTCCGCCCCGTTTACGCGGGCGGCTTGCTGTGTGGCTGCTGGAGATACGTGCCGGGGTCTACGTGGGCAATTACTCGCGCAAGGTGCGGGAGCACGTTTGGGAGCAGGTGGAGGAAGGCATCGAAGACGGTAACGCAGTGATGGCATGGCATACAAACAACGAAGCAGGCTTCGAATTTCAAACTCTCGGTGCCAACCGGCGTCTGCCCGCTGATTGGGACGGAGTACGGCTGGTGAGCTTCCACCCGGAAGCCGACAACCCCGATCCTTAACAATCCGAAAAATATCTTTTTGGCATACAATTCAGCCGGTAGCATTTGAACACTCTGAAATCCCATTAGAATTCATGGAGATGGAAGAAGT # Right flank : GGGGAATACTAGTACCTCTGCACACAGAATTTGACAGGTTGATGGTCGGGCGAGCGCAGGAGGGGCAGGGCTTCGGGCGGGGCGAGGAGTCGGATGCTGCGTGCGACTCCAGGCTGTCGGCTGAGGAGTCCCAGGCGCTCGAGCGTGAGCACCATCTGATGCACCGAGGGTGGCGTGATGTGGAAGTAGCGTTGCAAGTCGGCTTCGGCCGGCGGCCGGCCGAGCACCTGAGTGTACGCATAGATGAAGGCGAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 153-4776 **** Predicted by CRISPRDetect 2.4 *** >NZ_WTVG01000048.1 Aromatoleum anaerobium strain LuFRes1 NODE_48_length_28208_cov_17.8882, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 153 29 100.0 32 ............................. GGGCAGGAGTCCCTGAGTACGTCGCTCAGCTT 214 29 100.0 32 ............................. GTGTTCGGCCTCTACAAATCCGCGTCGCTGCA 275 29 100.0 33 ............................. TATTTCCGCGAGGCCTGCGTCGCGCTGTCGATC 337 29 100.0 32 ............................. AATGAACCGCGCAGCCCGCCGCCAGGCCAGCC 398 29 100.0 32 ............................. TCGTCAATGCCCTCCGCGAACTGGAGGAAAAC 459 29 100.0 32 ............................. AAGCGGGACGAGGCGCGGGCGGCTGGGTGACG 520 29 100.0 32 ............................. CCATTGAGTATGATGCGTTTCTCATTTTCAAA 581 29 100.0 33 ............................. GGGGGCGATCTTCATCGTGATCGCGCCCGTCGC 643 29 100.0 32 ............................. CTCGATTCGATGGCGGTCCAGTCGCCGTAGCG 704 29 100.0 32 ............................. GCGCAGAACGGCTCACGCCGCGCGCCTCGTCG 765 29 100.0 32 ............................. CACACGAGATAACAATAACAAAATCCATTTGC 826 29 100.0 32 ............................. GATGACGAATTGATGCTTGGATAGGAAACTAG 887 29 100.0 32 ............................. AACCTGCTCCAGAGGAGGAACCGCCGAAAGAC 948 29 100.0 32 ............................. TTCGCCGCTGTTCCGGTTGTGGCTGTGCTGTT 1009 29 100.0 32 ............................. CCGTCCATAAGCAAGCTTCGCGTGATGCAGCA 1070 29 100.0 34 ............................. TAGCTGGTGACCACAGCCCGGAATCGCGCCAACG 1133 29 100.0 32 ............................. TAGCCACAGCGCATCGAGCAGCGGGGCGGCGT 1194 29 96.6 32 ............................T GCAGCACGCGATCGCGAAACGGCAGCGCCGCG 1255 29 100.0 32 ............................. CGAATATGACCTCTACCTCGACTGGGTCTACC 1316 29 100.0 32 ............................. GTGGCGATGGAATCCGGCGCGGTCAGGCCGGC 1377 29 100.0 32 ............................. CAGATGGTCAAACTCGACGCCCCCAAGAGGCC 1438 29 100.0 32 ............................. TGGCTGTGGATGAGATCAGTGTTGAGGAAGAT 1499 29 100.0 32 ............................. CATGAGCAAGATCAAGGCGGCGAGAAAGGCCA 1560 29 100.0 32 ............................. GCGCCGACGCGCTGCGGCAATGGGCGCAGGCC 1621 29 100.0 32 ............................. CTGGCGTTCGAGGTGTCGGACGAGCTGCGCTA 1682 29 100.0 32 ............................. GCATCGTCGAGACGCAGCGCTGGATGATTGCG 1743 29 100.0 33 ............................. CCTCGATGAGCTTGCGTACGAGCGGGCTCGCTT 1805 29 100.0 32 ............................. GTCGGCGACGGCGACGGCCTGGCCGTCGGGGC 1866 29 100.0 32 ............................. GCCGCGCAGTACTTGACCGTGTCGCCGGCGTA 1927 29 100.0 32 ............................. GCCACCTTGTGAATACCCTCATTCCTATGGAG 1988 29 100.0 32 ............................. ACCCTCGTCGCCGCGCAGAGAGTCATCGAGCA 2049 29 100.0 33 ............................. ACGTACTCGAAGCGATGCGGCAAGCGCTCGACG 2111 29 100.0 32 ............................. CGGGTGGCAGAGGTCGTTGGAATCGACCCTGC 2172 29 100.0 32 ............................. CCAGTCGCGAAGACCAGCATCTCACCGAAGAC 2233 29 100.0 32 ............................. CGAAACCCGAAGCGCCCGCGATGCGTTGGCTG 2294 29 100.0 33 ............................. AAGAAGGCGCTGCCGGTCTTGTCGCGGATCTTT 2356 29 100.0 32 ............................. GCGGCGCTGAACCGCTCGATCGGCTGGAACGA 2417 29 100.0 33 ............................. CGAACTGGCTCGGGCGAAACTGCACATCCTGAC 2479 29 100.0 32 ............................. CCTCTCCCGCATTCAGGGGTGCACCCTGAATT 2540 29 100.0 32 ............................. CACGCGCGATGACTGCGCTTGGCTCGGCTCGC 2601 29 100.0 32 ............................. AAGCTGCGCATGACGGAAGAGGACCTGGTGAT 2662 29 100.0 32 ............................. TACTTGTACCAGATCGCGACAGGACGGCGTAG 2723 29 100.0 32 ............................. GATTCTGGCGCGACGACGCGAAAGTGAAGATC 2784 29 100.0 32 ............................. CGCGGCGACTCGCGCGACAAGACCCGCGAAGC 2845 29 100.0 32 ............................. CGGGCGACGTCCTGAACTGGATGATTTGCCTG 2906 29 96.6 33 ............................C GTGAGAAGCGGCCGTCTGCTGTACGAAGCGGAC 2968 29 100.0 33 ............................. CCGGTTGAGTGCGAGTGCATGTCGACTGCCGGC 3030 29 100.0 32 ............................. ACGGAATCGTCGTCAATATGGCGATCGGCACG 3091 29 100.0 33 ............................. CAGGCGCAGCGACTGCCCCTCCTGCACGATAAA 3153 29 100.0 32 ............................. GAATAGTAGGCGTTGATCTCGCTCGCGCGCAG 3214 29 100.0 33 ............................. AAGTGGCTGATCAACATCAGCGCATCCGTGTCC 3276 29 100.0 32 ............................. GACGCGTGGCGCGAACTGCTTGCGACGATCAC 3337 29 100.0 33 ............................. CACGAAAGAGCGACCCATTGGCGGTCGCATACA 3399 29 100.0 32 ............................. ATGGGGCGCGCCATCTCACACCCCCTGCAGCA 3460 29 100.0 32 ............................. GGATATGGCTGGAGGCCTGCTTTATCGCAACG 3521 29 100.0 32 ............................. GTTTTGCCGCAGAACACGCGCACGCCGGAGAA 3582 29 100.0 32 ............................. CCGATAGCCTGCTCGCGTTCTACGACGCAAAC 3643 29 96.6 33 ............................C CACCAAGTCGCAATAGCCGCCTTTGAGCAGTTC 3705 29 100.0 33 ............................. GGTCGCCGGCGAGCTCGACGACCGGCGCCTCTG 3767 29 96.6 32 ....................A........ GCGACGAGCGGGCGGGGTGAGCCGCTCGGGAG 3828 29 100.0 32 ............................. GCGCTTCACTCACCTTCGGCGGGGCTTTTTCG 3889 29 100.0 32 ............................. GTCGGCCGCCAGAAGACGCTGGCCGACCAGGT 3950 29 100.0 32 ............................. CCTGCTCTACATCATGGGTTGCGAGCCGGCAA 4011 29 100.0 33 ............................. ACCATCACCGGCGCGACGCAGGCCAACCCCGTC 4073 29 100.0 33 ............................. TTCAACACGCCGCTTCCGGTGATATCGACAGCG 4135 29 96.6 32 ............A................ AAAAAATCGGCCTGCTGTCGGCAGCGTACGTA 4196 29 100.0 32 ............................. ACTTTTTTGGGCAACTGCTCGAAGGTGCGCAG 4257 29 100.0 32 ............................. TCGCCATCAGCGATGGCGAGGGCGGCTACGAC 4318 29 100.0 32 ............................. TTCGACGTCACGGGCATCGCGGACGGCGCTGC 4379 29 100.0 32 ............................. GCGCCGGAGGGCTACATCCGGCGCTCGCTCTG 4440 29 100.0 33 ............................. AGCGTTTTGCCGTCGCTCATCGTCGGGCCGAGG 4502 29 100.0 33 ............................. GCCACGCCGTTGATGTTTTTCGAGGCGTTCGGC 4564 29 100.0 32 ............................. TCGCTGTGGGCCGGCAACCCGACCGGAAACGC 4625 29 100.0 33 ............................. CTCGTGCATCCGCACACCCTGAGGCACAGCTTC 4687 29 100.0 32 ............................. CATGGGCCGTGACTGACGCCCGGAGCGCGCCA 4748 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 76 29 99.8 32 GTGTTCCCCACGCCCGTGGGGATGAACCG # Left flank : TGGGAGCAGCAGCGCAACGCCATCGGCGCTCGCATCCACTGGATGTTCACCACCGACCGCGCCCGGAGCAAACTGGCCCGCGCTTACCCGCACCCAGCCAAACAGTCATAACCTCTGTGCAGAGGTACTAGTTACGCGGGTCGGTGGGGCATG # Right flank : GACGACACCCGCCGCTGGCCGATCGACACCTACCTACGGAGCAAGACCTGACAAGCTCGCGCCCGACGAACACACGTGCGAAGACCTGATCGTGCAGTGCGCGATTCACGCCTGACTGGAAGATACCGCCCGCAGCGTCGCTCAGATCCAGGCCGTCATCCACACCCTCAAATCCATCCACTTCGACACACGCGGCACCGATCTGCTTCGCGCGCGTGATTCGCTCGGCCGGCTCCGCATGGTGAACGCCGAACTGGGACAACCGCTGCCGCGTGGAGATATCGAGGGGCGTGAGGCGACGTGATGAGCATATTTCCTGAAAGCCAAGGCCTGCTTGTGCTTCCCTGTCTGCGCACGCAGAACGCCAATGCGATTTCCAGCCCCCTCACGCGCGGCTTCCCACCGCAAGCCTGCCGGCCAGCAAGGGAATTTCCGCTGCGGACGACGTTCGAATTGCGCGAGGGATGGTGCTTCTTCCGAATCGTCGGCGGGCCATCAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCCCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //