Array 1 51494-50488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNRU010000013.1 Chromobacterium piscinae strain CR3 contig_0000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51493 29 100.0 32 ............................. AGGAACGAAACGCCCATGCCGTCGAAAATGGC 51432 29 100.0 33 ............................. TGGATAAACGAAGGGGAAGCAGATGACACCGAC 51370 29 100.0 32 ............................. CGATCAAAGCCCACCCCGATTTTGAGCAAAAA 51309 29 100.0 32 ............................. CAGGCCGGGCCGGCCAAACCGCCCCGCGTGGT 51248 29 100.0 32 ............................. GGCCAGGAACTGCGCATCGATCCGGTGAAGTG 51187 29 100.0 32 ............................. GATTCGGTTGTAATTGGCGCTGATCGACTGGC 51126 29 100.0 32 ............................. CCGGCGCCCGATACCCCACACATCGCCCACCT 51065 29 100.0 32 ............................. GCGGGCCGCCTTCTTCTTCGTGACAACCTCCT 51004 29 100.0 32 ............................. GCCGGCCGCGACGGCGTGCATGGCTATTCGGA 50943 29 100.0 32 ............................. GCTCTTGCCGTCGGCATCGTGCAGAACGTCCG 50882 29 100.0 32 ............................. TGCCAACGCACCGATTCGACCAGTGTTTTGAC 50821 29 100.0 32 ............................. CGTATTGATTTGACGACGCGTGAGTGGGCATG 50760 29 100.0 32 ............................. CAGTTTGAAGGACTCAAGCTGACTGCCTATCA 50699 29 100.0 32 ............................. AGATTGTCTAACTCGATCACCGCTTGGCGTTG 50638 29 100.0 32 ............................. ACTCTATTGCCTGGAACGCTCAGTTCCGCAAG 50577 29 100.0 32 ............................. GACGTATTCACGGCCAGCCTGCGCAAAACCAA 50516 29 96.6 0 ........................C.... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 CTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : CGGACATCGAAACCATGCTGGACGCCGGCGGCCTGGACAAGCCGGAGGCGCAGGGCGTGGTGGACGCGGCGTTTCCGGAAGACGAGGGGCTGGGCGATGCTGGTCATCGTACTTGAGAACGCGCCGCCCCGGCTGCGCGGCCGGATGGCGATCTGGTTGCTGGAAATCCGCGCCGGGGTCTACGTTGGAAACTACAACCGCAAGATCCGCGATTACCTATGGCAGCAGGTGGAGGACGGGTTGGAAGATGGCAACGCGGTGATGGCTTGGCAGGCCGCCATCGAGGCCGGCTTCGACTTCGTCACGCTGGGTGCCAACCGCCGCATGCCGGCCGAGTTCGACGGCGCGAAATTGGTGTCTTTTCTGCCGCCACCGGTACCGGAAGAGAGCAGTGAATAGCATGAGGATCGCTTTGTGCCAGGGGGCAATTTGGCTCTTTGAAAATCGGTAGATTTTTAGGTGGCGTTTTTGTTTTTCAAAATCAATTGCTTGCAATTGGT # Right flank : GATGCCGCTGTCAGCTACGCGCCGATTTTTACCTGTGAACCGCAGTCCCGCCACCCGCTAAAGACCGCATGCGCGCGCGCCACGCATGGAAAGGTTTGTCATCCAATCTTTCCGCTGCTTGCGGCGCTTGGGTGGCGCTTCCTATGCTGCAATGGTTGAGGCTGAAGGAGTCGCCATGCAGCAGTTGAGAACGGGTTTGCTGGTTGCCGCGCTGTTTCTCGCGGTGGCCTTTGTTTCCAGATCGCTGGCCAGTTCCGTCACGGAAACCATGCCGGTCTGGCTGGGCAGCGGGGTGACTTTTTCCGCGTTGTTGATCTCCCCCCGCTGGCGCTGGCCTGCCATCCTCGCCGGCGTGTGGCTGGGGTCGGTGATCTGGGGCATGGTTGCGCATGGCCTGAGTCCGGCGGGGGCGGCGGCTTTCGCCAGCATCGAGGTGGTCAGCGGCGCCATGGGCTGCTGGGTGGCCAGCCTGGGGCGCAACGATCCGGATACCCCGGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 63384-62147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNRU010000013.1 Chromobacterium piscinae strain CR3 contig_0000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 63383 29 100.0 32 ............................. TTTCAATGTGCCATCTTTATTAACCGTGCTAG 63322 29 100.0 32 ............................. GTCACGAATTTGACGATGATGCTGCGCACCAG 63261 29 96.6 18 ............................C ACACACACACACACACAC Deletion [63215] 63214 29 100.0 32 ............................. CTGTCGCACGCCCCCGGCGCTGCGGACTTGTC 63153 29 100.0 32 ............................. AGCGTGAGCGGCCAGGACCTGCCATCCGCCAC 63092 29 96.6 32 C............................ TCTGTTGTAGTCGCGAGACTTGATCCGCCGCA 63031 29 100.0 33 ............................. TCGCGCATGAACCGATCAATGCCGGCGTCTGCC 62969 29 100.0 32 ............................. TCATCGAGGGCGTTAACGCGTTCCTGCGAAGC 62908 29 100.0 32 ............................. CCGGGCGATGCCAGTGGTTCTACTGGCAATAA 62847 29 100.0 32 ............................. CCCAAATGGCGATGCGTGGCGAATCTGTCAAC 62786 29 100.0 33 ............................. GCATTTTGGGAGGATTTCAGGAAAAAGCTCGGC 62724 29 100.0 32 ............................. AGACGGGTATTACTAGTCACCCGTCTCACTGC 62663 29 100.0 32 ............................. TCGCGCTGGCTGCGTAGTTGATCGCATGACAG 62602 29 100.0 32 ............................. GGCGCCGTCGGCCGCGGTTAATTCGCTGCCAT 62541 29 100.0 32 ............................. CCGAAAGTTCGTCGGTGCCGTTGATTGCTTCC 62480 29 100.0 32 ............................. CGCTGGAAAAGATGGGTGACAAGAGTCAGAAC 62419 29 100.0 32 ............................. ATCACCGCGAGGTATGTACTTGTTTGGCATAC 62358 29 100.0 32 ............................. AAATCATAACTGCCAAAATAATTTTCCCAACC 62297 29 100.0 32 ............................. TTATCGCTATTGCCCCACTGCATTTCTGAAGA 62236 29 100.0 32 ............................. CCCGGCGAGAGCGCCACCTACAACTCCCACGG 62175 29 93.1 0 .........................G.T. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.3 31 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : ACCTGCTGGCGCAGTGGCTGTACAACGTGCCGCCGCTGTTCCACCTGTCCGCCGCCAGCCTCAAGGCCCGCTTGCCGCAGCTGCAATGCGCCGACCGCGCCTTCCGCCCCTTGCACGAGCAACTGGCCACCCAGGCGCTCACCGGCTTTGCCTGGTTGAACGCCGAGCATACGCTGCAGCAAACCCGCTTTGCCGACGGCAGCCGCCTCACCGCCAACTTCGCCGCGGAGCCTGCCGTCCATGGCAAGCAAACCCTGCCGCCTCAAAGCTTGCTCGCCGAGCTGGCCGGTCAGTCGTCCAGGCTGCTGCTAGTGGCGGATTGCGCCGGCAAGTAAGCGGCGGCGATAATGCCAATGTCGTTTGCTGGCCATGGGGCGACGGTTTCCCATGGCTGGCAGACGGCATCGCCAGGTTATTCAATTGATCATTTTTTAGGCTATAAAATCGGTAGATTTTTAGGATGAGTTTTTATCTTTAAAAATCAAAATGTTGAAATTGGT # Right flank : CTCGAAACGCCGCCGATGGATTCTGCATTCAAGTATTCCGCACCTAATGTGGGGATCCATTGCCTGGAGTCTTACCGCTATATCAGTCGTTCAAGAGTTATCCATGCCGGCAGGGATGCGTTCCAAACTGCCTGCCATGCCGAGCGGCGGGTGATTCACATCCGATCGCCGGTTTCGTTCAAGTGGACATGACGATGCTTTCCGCCCATGCAGAACGAAAGGACTGGCTATGCCCTGGATGACCGACTTGTTCCGTACCGCCAATGACGCCAGAGGTCCGTTTCCTGATCGCCCCTTGTCGCGCGTCACGCTGCCCGGGACGCACGACTCCGGCTGTTATGTGGACCGGGCGGTGAGCAACGCGCTTTCCAAAACCCAAAGCCAGGACATCTACGGCCAGCTGTTGGGCGGCATCCGGTATTTCGATATCCGTCCATGCGTCAAGGATGGGCGGTTGTTCACCTATCACGGCGAGTTTTATACCGGCGGACCGATAGATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 71172-70655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNRU010000013.1 Chromobacterium piscinae strain CR3 contig_0000013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 71171 29 100.0 32 ............................. ACAAAGGGCCGCAAGCGCCCGCACACAATCCC 71110 29 100.0 32 ............................. TTATCGCTATTGCCCCACTGCATTTCTGAAGA 71049 29 100.0 32 ............................. TGTCGGCGCACGCGCGCCCTGATCGTTACCGC 70988 29 100.0 32 ............................. TTCATCAGCAAGAACGCGCAGGGTGACATTGT 70927 29 100.0 32 ............................. GCGCGCTTGTGGCCGCGGGGCGTGAATGAGCG 70866 29 96.6 32 ............................A ACACTCGCCAAGCTGGCCAACCGAATCGCGAA 70805 29 100.0 32 ............................. TTTCAGATGCCTCAATCCTTGAAGCGCATGAT 70744 29 96.6 32 .............G............... CCAGTGCCAGCAGCAGCTTGGTGAGCTTCGCG 70683 29 82.8 0 .............G...........TTGA | ========== ====== ====== ====== ============================= ================================ ================== 9 29 97.3 32 GTGTTCCCCACGTACGTGGGGATGAACCG # Left flank : TTGCCCACGCCGGGCGGGCCCCACAATATCATCGAGTGCGGCTTGCCGGACGCCACCGCGAGGCTCAGCGGCTTGCCCGGGCCGATCAGATGCTGCTGGCCGATCACCTGATCGAGCGCCTGCGGACGCAAGGCCTCGGCCAGCGGTTTTTGCGGTTCGACGGAAAAAAGATCGGACATGGCGCGATTTGGGCGGGATGGAGCGGAGAAACAGTATACCAGTTGGGGGCGGGCATGAAAAAAGCGCCGGACCGGTGCTTTTTGCTTGCATGTCGATGGAATGAAGGTACGCTATGGCTGCTGACCTAGCCTAAGCCTTGCTGTTGCGGAAGCTTGGCGTTCAGCATCAGGGGCGAGCGGTGTTGGACCCTTGTGCAAGGGACGATTTGCCAAGGCCTGGCCGGGTTTGCCGTGCTGATTTGAACGCCGCTTCGGACTGGGAAAATCGGTAGAATTTTAGATCGGGTTTTTGTCTTTAAAAATCAGTAGTTTGAAAATGGT # Right flank : CGGGCGCGGGCTGGAATGGTGTCGCGGCGCTGCCAGTCCTGCCGCGTCCGGCAACAAAAAAGCGCCCCGTGGGGCGCTTTTTTCGGCACAACAATCCAGAAGGCTTAGGCGCGCTTCTTGAATTCGTTGGTGCGGGTGTCGATTTCGATCTTTTCGCCGGTGTTGACGAAGGCCGGAACCTGAACTTCGAAAGTGGTGCCTACCAGGCGGGCCGGCTTCAGCACTTTGCCCGAGGTGTCGCCGCGCACGGCCGGCTCGGTGTATTCCACTTCGCGGACCACGGTGGTCGGCAGTTCCACGGAGATGGCCTTGCCGTCGTAGAAGGTAACCTGGCAGATGTCTTCCATGCCGTCGACGATGAAGTTCAGGGTATCGCCCAGGTTGTCGGCTTCCACTTCGTACTGGTTGAATTCGGTGTCCATGAACACGTACATCGGGTCGGCGAAGTAGGAGTAGGTGCAGTCCTTGCGATCCAGCACCACCACGTCGAACTTGTCGTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //