Array 1 5758-211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXFG01000228.1 Xanthomonas oryzae pv. oryzae strain DXO-233 contig_228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 5757 31 100.0 34 ............................... AGCTCACGCACGTAATCGTCTATGGGCTGTGAGA 5692 31 100.0 34 ............................... TCAAGATTGCAGATTATCCAGTAGAGGTTCGAGA 5627 31 100.0 35 ............................... TGCGATTTTCGCGGCAGGAAGTATGCAATGGGCTC 5561 31 100.0 36 ............................... CGTATCAGCCTGGTGATTACGAGCTTGATATTGAAG 5494 31 100.0 33 ............................... TAGAGCAACCAACCAACTAGAGGTATGTGTCAT 5430 31 100.0 33 ............................... TAAGATACAACATCGCCCAGCGCACAACGGGCG 5366 31 100.0 34 ............................... CGACGTTGTCCGGACTATGACATACGAGTCAGCG 5301 31 100.0 35 ............................... CCCTTTGGCAGGTATGTAACCTCACATGGGCGGAG 5235 31 100.0 35 ............................... ATCCGTGCAACGCTCTGAGCGCGTCTCTACGGGCT 5169 31 100.0 34 ............................... ATACACTGCTGCTCGATGGGCCCAACAGCACACA 5104 31 100.0 34 ............................... CACCAGGCTTCACCATGGCATTCGACGCTTCTAC 5039 31 100.0 34 ............................... ATTTGCAAAGAAGGTCAGCGGGTCTGTAGAAGCA 4974 31 100.0 35 ............................... ACGGCAAAGTAGTTGCGACCCTCTGCCAATGTATT 4908 31 100.0 35 ............................... AATCGAGATGAGGCGGAGGCGAGGGCGCGTGTAGA 4842 31 100.0 34 ............................... TGCCCGCTGATCTGCCTAGTGACATATACGCCAT 4777 31 100.0 34 ............................... CATGACCTTCTGTAGGTCGAGCGTCCCTGGTGCG 4712 31 100.0 36 ............................... CCACACCACGTCGCCGGGCAAGTTCGAGAAGGTGGG 4645 31 100.0 34 ............................... CCTTGGTTACAGCGTCAGCGTCGTCACCTATGGC 4580 31 100.0 35 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATG 4514 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 4447 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 4381 31 100.0 35 ............................... CTGCGCAGCACAACAAGTGCATTGCGGTCAGAGGT 4315 31 100.0 35 ............................... GTTGCCCGACTGACTGACGCCCAAGGTCTGGCCGA 4249 31 100.0 37 ............................... ATGAGCGCGCATGCGCAGATCAGCAAGCAATGCAAGC 4181 31 100.0 34 ............................... ACAGTAGCAGCAGAGTGGGTGAGACTTGAGGAAC 4116 31 100.0 34 ............................... CGGCTTACAACCCCAAGCTGGGGGCGGGCGTCCT 4051 31 100.0 36 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAAA 3984 31 100.0 34 ............................... CTCAGACCGCTTTTTGAGCGTGTCACTGTACAGC 3919 31 100.0 35 ............................... CCAGTTTGCAGGCTTTTGGCCTGACTTGCGCTGGC 3853 31 100.0 35 ............................... TGGCCCGTGTGTTGCGGAGGATACGTTTTTCCTCC 3787 31 100.0 33 ............................... ACCGCAGCCCGGTAGGCCCACTATGTTGTCGGC 3723 31 100.0 36 ............................... TTCTCTATAGGTGCCTCACCCCTCGAACGTCGGCGA 3656 31 100.0 35 ............................... ATGTAGCTGGCAAGCTGCGGAGCATCGCTCAGGAT 3590 31 100.0 34 ............................... TCGGCCACGCTGGCGCTGTCGTTGAACGTCATGT 3525 31 100.0 36 ............................... GAGCGTTGGAATCCTATGGTAATACCCCTCCACAGC 3458 31 100.0 34 ............................... GCCAACTCAATCGCCGCCCAGTCAATCGGGTTGA 3393 31 100.0 33 ............................... AGCATCTTCCTTTACCTTCAGGCCGCGGATCAG 3329 31 100.0 35 ............................... TTCCGCCACGATACTGCGTATGTCTGGACACCATC 3263 31 100.0 34 ............................... ACAAGCTGGCTGTAATAGCTGCTTCGCGCAGCAC 3198 31 100.0 34 ............................... GGGAGGGTTATATCCCTCCCAGCATCTCGCCCAC 3133 31 100.0 34 ............................... AGGGTCGATTTGGCGGGCCTGCTCTTGCTGCGCA 3068 31 100.0 37 ............................... CGCCATACAGGGGCGCTACATCATCCATGCTTGCAAT 3000 31 100.0 34 ............................... ACAGTGACCTTGCCTTGATGCGCAATCAGCTGGT 2935 31 100.0 36 ............................... TCAGGCATTCCGCCCTCTTGCCAATAAATAGGCACA 2868 31 100.0 34 ............................... TCGGCATCCCGAAGAACAAGCTGAGGCTAGAGGG 2803 31 100.0 35 ............................... CAAGAAGTTTACCTGGGCGAATGCCTGCTCGTTAC 2737 31 100.0 37 ............................... TCGACGAGCGTGCAGGCCTTGGCAATTCCTTGATGAG 2669 31 100.0 35 ............................... CAAATCTGCTGCCGGGGAATGTCAATCATCTGACC 2603 31 100.0 34 ............................... TTCCTGGGATTCCTATTCGCCATCGATGCAGCAG 2538 31 100.0 33 ............................... GAGCTCATCGAGTACGTTGTTGAGCGTGGTCTG 2474 31 100.0 34 ............................... GAAGGCGCGGGTCTCAGAGACATCGAGGGTCTTC 2409 31 100.0 34 ............................... TACGTCAACGAGCGCAAGCCGCTCGCTCCGCCAG 2344 31 100.0 34 ............................... TGCGCCTGAGGATCTGGTGCTGATGGGTCCACCA 2279 31 100.0 34 ............................... CCTGACCCCGCCGGATACCCGTCTGACCGTCCGT 2214 31 100.0 34 ............................... CAGCAATACTCGCTGCCGTTGCCTCATGGCCAGC 2149 31 100.0 35 ............................... TCCGTTGCTGCTGCAATCAGCTGGTCGAGGTCCTG 2083 31 100.0 36 ............................... CTCTAATTGTTTGGTGCTGCTATGGCACTGCTGACA 2016 31 100.0 35 ............................... AGCTGGGCAAAGCCAAGGAAGGGAGTCAAGCCGGG 1950 31 100.0 35 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACCAT 1884 31 100.0 35 ............................... CCGTCGACAAGCACGCGTCGGGCGATCTGGACGGT 1818 31 100.0 35 ............................... GTGAACAACGCTGCCATCGTTGCTGAGGGCGGCCT 1752 31 100.0 36 ............................... CACGGCTCTTTCTGGGATCAAACCACGGAATATGGG 1685 31 100.0 35 ............................... TGCTTCGTGCTGCTGTGACATGCTTGGCACAATGG 1619 31 100.0 34 ............................... CAGCGCAATATGGTGACGGTCTTGGCGGAAGAGC 1554 31 100.0 35 ............................... AGCTCAGCCTCAACAGTGTACAGCAGGGCAGCATT 1488 31 100.0 33 ............................... CCATTCTGGTCGCGGGAATTACTCTCGTTCTCC 1424 31 100.0 34 ............................... TTACGTACGCCAGTGGGAAGAAGGCTGGGCAGGT 1359 31 100.0 35 ............................... CGATTGGGGAATCGACCGCTAGCATAGTCCATCCC 1293 31 100.0 33 ............................... AAGGATGACGAGGGTAAGGATCGGGAATACACC 1229 31 100.0 35 ............................... GAGCTATACAACACCTCGAAGACACGCAAAGCGGT 1163 31 100.0 35 ............................... CCATCGTGCGGTGTGCATTGGCATTCTCCCGATCG 1097 31 100.0 35 ............................... AGCCGACATATGACGTGAGCGCGGCGAGTGCTTTG 1031 31 100.0 35 ............................... CCCGTCGCGGCAGCGGATCCATTCAGCGTCGCGCC 965 31 100.0 35 ............................... TACGAAGTGACGCGCGTACCGTCCGCACGCTCCGC 899 31 100.0 34 ............................... GGGCAGAACAAGGGTGGCCGCGACGCGCTCTATG 834 31 100.0 34 ............................... GCGTGCACGCAGGATGAGTCGGGTAAGTGGTGTA 769 31 100.0 35 ............................... TCGCAACGCCCGCCGCTGGTACTTCGGTCAATCTT 703 31 100.0 35 ............................... GTGCACTACTTCACCAAAGATCGCGCCGACCCCAA 637 31 100.0 36 ............................... AATGACAGCGCATCTGTGGCGGAGAATGCCCCTATG 570 31 100.0 37 ............................... AAGCTTGATCTTATTGGCATACACCCACCGCGGGAAC 502 31 100.0 34 ............................... GCCAAGAAGACGGACACCACGCACGTTATCGCGC 437 31 100.0 35 ............................... TTGTGGGACACGGCAGATATGGAGATGTGGGAAAG 371 31 100.0 34 ............................... AGAACATGAGTGTCCAAACGCCTGACGCGCAGAC 306 31 100.0 34 ............................... GCTACCACCTGAACGGCGCTCGCCGCCGCCGACC 241 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 85 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CCCCTTGGTGCCTATTGTGCCGGCGAATTCAACTCTGATTCGCAACGCTGTTGAGGACCTCCTCGGAGAAGACTTCGAGGGGCGTTTTGAATCCAAGTATCTTGCGCGGACGATTGTAGAGCCGCTGCTCGATCCATCGCAGGTGCGCATCGGTGATGGTGCTGACATCGGTCTGTCGTGGCAGGTATTGGCGTGTCAATCCGTTGGCATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //