Array 1 84186-85538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIJYR010000007.1 Escherichia sp. NIC26-1 NODE_7_length_171624_cov_279.500662, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84186 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84247 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84308 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84369 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84430 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84491 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84552 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84613 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84674 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84735 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 84796 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [84820] Deletion [84837] 84838 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 84899 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 84960 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 85021 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 85082 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 85143 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85204 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85265 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85326 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85388 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85449 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85510 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.0 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111088-112397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIJYR010000007.1 Escherichia sp. NIC26-1 NODE_7_length_171624_cov_279.500662, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111088 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 111149 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 111210 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 111271 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 111332 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 111393 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 111454 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 111515 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 111576 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 111637 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 111698 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 111759 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 111820 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 111881 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 111942 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 112003 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 112064 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 112125 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 112186 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 112247 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 112308 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 112369 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //