Array 1 28280-28954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023280.1 Nostoc sp. CENA543 plasmid pCENA543a, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 28280 36 100.0 34 .................................... CTACTTTTGCAATTTTGCAAGTTCAGATAACGAT 28350 36 100.0 34 .................................... CAGATTGCAATGGTGCAGCCAATATCATCCGTAA 28420 36 100.0 35 .................................... AGGTTGGAACCGTGAAAAACGTACTAGAGCGGGAA 28491 36 100.0 34 .................................... GGGTTACGCTGGAACATTGCATCAACTGAACTGG 28561 36 100.0 36 .................................... AGCTTTGGCAACACGTTTAATCGCTTTTTTTCGACG 28633 36 100.0 36 .................................... AGTGTGAATTCTCCGCTTGTTGCTTGGCGGACAAAG 28705 36 100.0 36 .................................... AGTATTTGAAGGCGCGGTTTGAGGAGTGGAAAAATC 28777 36 100.0 36 .................................... GGATCAAGGAAGTCGAGGAAAGTACAGCCGCCCTAC 28849 36 100.0 34 .................................... GCGGCTAGTGTTGCTGTAATCCTTTGAGTGTTTC 28919 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ==================================== ================== 10 36 100.0 35 CTGACCCAACCTTAGATGCCAGTAGGCGTTGTTCAC # Left flank : AGCCTACAACTTACTCCAAGGCTATGGAGAAAGAATACAATATTCTATTTTTCGGTCTTGGTTGAGTATGCGATCGCGGGAGAAATTGCGCTGGGAACTAGAAAAGATACTAGCTCCAGAAGATAGTTTGCTTCTGATTCGCTTGTCTCATCAGTGCGTTGCTAGCATACCAGCTTACAACCGTCCTGGTGTTTGGTCGTCTCAAGAGGAGGCATACCGAATTGTTTGATGCAAGGATCTGCGAATGTGGAATACTCAAAAAGAAAAACACAAGCAAGAAACTTCCATTAAACCTACTTTTCAGGGTTTTTAGATAATTAATAGGTACTTGCATTTTCTTTTCAGGCTTTAAAAGCTAATTAAACCAAAGGTTTGAAGCTTGGCGACAATCCCTAAAAATGAGATTTGTTTAATAATTTGTCCACTCTGTTGTTTTCTAAAGCAAGGTGCTTGTAAAATCAAAACCAAGCTCTGCTTTAGTATAGGTTTCAGCCATCGCT # Right flank : CAGACTTGTCCGCAACAAAAGAGCGTAAAACGACTACTTGTAGCGAACTGCAAACATAAATCGTCAAAACTGCAAACAAGGCAATTTTGAAACCACATTATCTGCAAATAAGAGGGGTCTCAAAACCACAATAATTGCAAATGAAACCACAATAACTGCAAACAAACCACAATAACTGCAAATGAAACCACATTAACTGCAAATAAGCCGTAACCCTTGCGGTGATTAGGATACAGAATTTATCACTGCAAAACTGTCCAAAAAATAAGAACTTTTACACCGAACATATATGTACGCTTTTCGTGGTTTAATTTGAACTAATACCGTTCGATTAAATCTATAAAGCTGTTTAAACCGACAGCCAGTTTGGCTATGGCTATTTATGCTTATCTGAGGGTCTCCAGCGACAAACAAGACGTACACAACCAACGACATGGCATTTTAGAATATGCCAACATCCACGCTTTGAGTCCCATCCAGTTTGTAGAGGACACAATTTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGACCCAACCTTAGATGCCAGTAGGCGTTGTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 2 32968-35641 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023280.1 Nostoc sp. CENA543 plasmid pCENA543a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 32968 36 100.0 33 .................................... GGATCGATTTTTTCAATTCCACTAGTAGTTTTA 33037 36 100.0 36 .................................... ACCAAGACGAAGAAAGATTACCAATCGCAGCAGGGG 33109 36 100.0 35 .................................... GCACTGCTGAAAAAATCAGAGAACTTGAAGTATAC 33180 36 100.0 35 .................................... ATAACAAGGAAGTAATGGAACATTTAGCTAATTTG 33251 36 100.0 34 .................................... AATTGTTATTCGGCGGGGCGGCTGGAGGTGGTAA 33321 36 100.0 35 .................................... TAATTAAAGGCAGAATACTTTTTACTACCTTAGTC 33392 36 100.0 34 .................................... ATTTTACATTGCTAATAATGCCATTGTGCATCAT 33462 36 100.0 35 .................................... TTGAAGGGATTTTATACGTTGAGCAATCAGTAAAT 33533 36 100.0 37 .................................... GTGATAAAATCTCCCCTCGCCACCTCAAATTAGTGGA 33606 36 100.0 37 .................................... AACACGCTCCTGACACTGAGTCCGTGAACTACCCCGC 33679 36 100.0 37 .................................... ATCTAAATTTTATTTAGGCGAATTGTGCGATCACTTT 33752 36 100.0 34 .................................... GTCCCAGCCTCCATGCGATCGCAAAGCGGGAGTT 33822 36 100.0 36 .................................... AGCTTATTCTGTGTGGTAATTTTGATAATTTCACTT 33894 36 100.0 35 .................................... ATACCTGATATTGACCCTATGATGACACCGCTTGA 33965 36 100.0 34 .................................... ACGGTATACTGGTAAGCTTTGAACGTCAGTCAGC 34035 36 100.0 34 .................................... TGCTTGGTGTAATTTACATGGAAAATCAAAGTAA 34105 36 100.0 37 .................................... GGAAATTCGCCAGGAATATCCTGATGGCTCAATAATT 34178 36 100.0 35 .................................... CTCTTGATAAAGGAATAAGGTTGAGTCTTTGGGGT 34249 36 100.0 37 .................................... TGCATCTTATATACAGTTTCTGTTTTACCCTTTTTCC 34322 36 100.0 34 .................................... GTGGGAGAAAAGCCTGTCCCTGGAGGTGATACTT 34392 36 100.0 37 .................................... TGATGTTATAATTAATACTCCTATAGGGGAATTGGTT 34465 36 100.0 34 .................................... CTAACGGGTGCGTGGCTAATCTCTACACACCTGG 34535 36 100.0 36 .................................... TGAAAGCTAGGAGTTTCGTTGTGATACACCCAGACG 34607 36 100.0 36 .................................... GAATTTCTGGATTTTCAAATGCTTTTTTAACTGGTT 34679 36 100.0 35 .................................... GTTAATTGTCCTGTGGGTGGCAGTGGTAGATTACG 34750 36 100.0 35 .................................... AGGTTGAGAAGCGGGAAGCAGCTATCAACGCCATC 34821 36 100.0 36 .................................... GATTAGCAAGGGGACTGTCAACGCTGAGGAATTGCG 34893 36 100.0 34 .................................... AATGATTTAATAAAACTTCTTTCAATACTCATTA 34963 36 100.0 34 .................................... AATGATTTAATAAAACTTCTTTCAATACTCATTA 35033 36 100.0 34 .................................... AGGTCAGGTTCATTTTGAACCTGAGCGATGACTT 35103 36 100.0 36 .................................... GCGTTGCTGTAGCCAGGGTCAATCTCTGGTTGTCTG 35175 36 100.0 37 .................................... ATTCAGAAGTTCTGGGAGATTCTATCTGACCCAGTGC 35248 36 100.0 36 .................................... ATTAAAGTCGGAAGAATTACAATTGATTTAGTGTTT 35320 36 100.0 36 .................................... TAAAAGTTCCATTTGCTCCTAGTGGTGTAGTGGTGA 35392 36 100.0 37 .................................... TTCTCACAGTAATCTTACTGAAAGAGATTCGCAGACA 35465 36 100.0 35 .................................... AGAATCCCCTTGCCACTGCCGGGAATGCCCACGAT 35536 36 97.2 34 ..........................T......... TTAAAAAGCTTGGCGATCGCATCTACGTTTCATA 35606 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 38 36 99.9 35 CTGACCCAACCTTAGATGCCAGTAGGCGTTGTTCAC # Left flank : AAATATACGAGTAAGTGAAGTAAATTCTTTTATACACGCTCAGTTACCTCCAGGTCGAACCCAAGATTTGAGAGACCAGATGTTAAAAATGGGAATTCCTTTGTATGCGTCAGAGGGAAATTAAATAAAACGAGAAATACCCCATATAGAATTTTTCGGTTCATTTATGTTCAGTTTATATCTAAATAAATGAACATATATGTTCGGTGTAAAAGTTCTTATTTTTTGGACAGTTTTGCAGTGATAAATTCTGTATCCTAATCACCGCAAGGGTTACGGCTTATTTGCAGTTAATGTGGTTTCATTTGCAGTTATTGTGGTTTGTTTGCAGTTATTGTGGTTTCATTTGCAATTATTGTGGTTTTGAGACCCCTCTTATTTGCAGATAATGTGGTTTCAAAATTGCCTTGTTTGCAGTTTTGACGATTTATGTTTGCAGTTCGCTACAAGTAGGCGTTGTTCACAAAGTATTCAGTCCCAGGCTGATATGCTTTCTTCTG # Right flank : CTAGAAATTAAGCAAGCTACGCGTAGCATCTCGCTCCAGAAGCCATTAGTCGGCTATCACTCACTTTTCCTCTAAAAATCCTAATAACAAGCAATCGCTTTTACTTTACAATCAGTGAATTGCTATCAAATTTGATATCAAATGACTGACCAAAAGACCCCACCCAGTGAAATGATTCGTGTGCCTACTGCCCTAATTCCAGCAGTAAAAAAACTATCTAAACTACATCGTCAAGGTCATACAATCGCCTTGCTGCAAGAGTTAGAGGAATTAATCACCCAGTTTGATAGCAAAATTGATAGCGATATAGCCCCTAGTAGTTTTGCAGTGAAGCAACTAGAACAGAAGCTAGAAACCAAGCTCGACGCAATTACCAAAAAGCTGGAACTCATGGAGAGAGCGATGACTTCTGGTAGATACAGCAACAACAGACCGCGCAGACAAGTTTACTCGCATCAACAACCCCAAGTTCAACTGCTACCCAGAACAAATGAAAGTTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGACCCAACCTTAGATGCCAGTAGGCGTTGTTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 37873-38352 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023280.1 Nostoc sp. CENA543 plasmid pCENA543a, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 37873 35 100.0 39 ................................... AAATCAGCAATACGTATAAAAATCCATATTTACTTTCTC 37947 35 100.0 40 ................................... TGTTCGTGGGAATATTAGACGGTGTAGGCTCGATTGGAAT 38022 35 100.0 36 ................................... TGTTGGGGAATCGACCTTGCCTAGTCTTTTCTCAAA 38093 35 100.0 40 ................................... ACATTTTTTACAAGTGTGGATATTCGTGTTAAAATACTGA 38168 35 100.0 41 ................................... TGTAGCGGTATTGTTATTGCTGCTGGTCACAGTATTAGCAA 38244 35 100.0 39 ................................... GTTTACTTAGGTGTTTGTGGCATCTCGTGAAGCTTGATT 38318 35 97.1 0 .....................G............. | ========== ====== ====== ====== =================================== ========================================= ================== 7 35 99.6 39 GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Left flank : CTTGTTTTGACTTTCCAAACATCCTCTAATACCAATTCGCAATGAGCTAAAGCCCCACTCCGTTGGTGCAGCCTCTTGTAGAGAAGACAGCAATAGACTCTGAGTTCCAAGGTTGGCATCTGTTGCGGAATTTCAGAAAACTGGCATAATTTTATACTTTATACTTCACATTGACTTTTTTAGTAGGTTTCTATACACTGACAGTCAAAGTTCCTGAACCATGAAAAATTAATAATACTTGGATCAAGTATTTCAATTTACTCTGATTCATTTGGCAAACTTATAGTTTTTTGTTGAATGATAAGCATCTGAGGGGGTCAGACAACGGCTGAAACCCTTATTCTTTCGTTGACCCCCTCAGATAGCTTGCTGAGTAAGCGTTTGAGGCTCATCAGAAAGTGGTTTGTTGACAGAGTTTATCAATTATTTGGCTGAAAAAATGACCCCCTCAGATTGACCTATATCAAACTCAATCGTGGCAAGGCTTCTGAACAGGTAGG # Right flank : CTTCAGCCCAGAGTTTCACATCATACTCATCGTGAAGGATGGGAAGTTCACCTCGAATCAGTTCACTCAAGGGCAGAAAAAGATCCCAGGGTGAAGCGTTGGCTAACCCTGTTTTGTCACTCTAGGCAGAGGAAAAGTAGAAATCAGGGTGAGTCAGGAAAATAAATATTGAACTGGTGAGGTGATAAATAATAGATTGAAGTTTAGAAAAACCCAAGGACAATTGGGGAATAGGAAAAACTGTTAACCAGGGATATATTAGGTTAAATAAAGTAAAAGGTTGAATTATTAAACGGAGATTGTTAAGAATGTTCTTCCAACCCTTTCCATCATCCCACCAAGGATGAACAGCAAATTTTGATGGAGATTCAGGCACAGAAAACTGCATTTGTTCAGAGTGAAGGCTAACCATTAAATAGCTACTACAAACAATCTCCCACCAGCGTTCAATATCCGCATAGTGAGTCAGACGATAATCTGCCCAACCTAATTCATTCTTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTTTACCCCTCACGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 694181-691625 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 694180 37 100.0 37 ..................................... GAGCAACAAAACTAATTAATTGCAAAAACCTAGTGTG 694106 37 100.0 35 ..................................... TTGCTGTAATCCTTTGAGTGTTTCTGTGTCACTAT 694034 37 100.0 34 ..................................... AAGTAATACAAATTAACTTATAACTAACCGGATG 693963 37 100.0 43 ..................................... TTTCCTGTGGCAGCCGTAGAAATGCCACCAGGATTCCCAGAGG 693883 37 100.0 38 ..................................... TCTTATCCCTTCCGAATACAAATATGAAGAGTGGAAGG 693808 37 100.0 38 ..................................... GTTCATTCGCCAACAATTGGCAAAAATAACGGCGAGAG 693733 37 100.0 36 ..................................... ACAAAGGAGTCTTGGGAGTCTTAGAGTCCGCTATGG 693660 37 100.0 38 ..................................... GCTTGTAGGTAAGTGCGATCGCTGAGGCTAGTAAAACT 693585 37 100.0 35 ..................................... CCAAGAGTTACTGAGGCACTAGAAGTTACCGTTAG 693513 37 100.0 35 ..................................... GCTTGGAGGGCATCCGCCAAATTAGCCTCCACGAT 693441 37 100.0 36 ..................................... TAGCGAGTTGTATCATCATTGGATAACGGAGAAACA 693368 37 100.0 35 ..................................... ATTTAGGGATGCTTGAAGATGCAGGCAAAATTAAG 693296 37 100.0 36 ..................................... TAGATACAACTAAAGCTCAAACATATAGATCATGGG 693223 37 100.0 35 ..................................... CATACAACGAGCAGCCCCCCGTGAAGAAAGCGCGA 693151 37 100.0 33 ..................................... AAAATTTGAAAACTTAACTCCCTCCTTTTCTAA 693081 37 100.0 39 ..................................... CTCACGACGGTTATTTGCAGGGTTTCTGTCCCAATGATG 693005 37 100.0 39 ..................................... TGGCCAGGACAAATAGATATATGCTCTGCCGAGACTAAA 692929 37 100.0 39 ..................................... TGTAGCCCGTTGTGCATCAAGTAAAGACCTGCCAGCGTG 692853 37 100.0 34 ..................................... AACTGATTTCCAAACCAATCAACAACAAACCCAA 692782 37 100.0 41 ..................................... AAGTCTCGAATCTGGTATCAATTACGCCAAACTCTGTTAAG 692704 37 100.0 38 ..................................... TTGTCAATAGACTCAACTTTTTCATCAACAGCTAGAGC 692629 37 100.0 37 ..................................... GGTAAAGATGCCATTGTTTTTGAATTTCCATTCACAC 692555 37 100.0 35 ..................................... AAGTTTGTCACCTGCATTGCATAGTTGACAGATGG 692483 37 100.0 36 ..................................... ACGTTTCCCACAGCATCATCAATCGCTTGGCGACCG 692410 37 100.0 37 ..................................... AATTCTGATAATATCCTTTTCATTGGCTTCTAAGAAA 692336 37 100.0 36 ..................................... TTAGCGTTTACCTGGGTAGTCCAGCCAATAGGCGCG 692263 37 100.0 38 ..................................... CCTTTTGCTCAACAAGACTTGAAATGGCAGCCGGAGGA 692188 37 100.0 37 ..................................... ATGCTCTAGTTATTCGCTAGAGCTTTTTTAATGTCAG 692114 37 100.0 43 ..................................... TGGTTATTTTTGTAAGAAGAAAAAACAACAAAATAAAACGCGT 692034 37 100.0 34 ..................................... ATTTCTTGTCATAGCTTGTTCTATGTATTTGTCA 691963 37 100.0 39 ..................................... CTAAATCCACTATTGCTAGATAATTCAAAGTCTTTTTGA 691887 37 100.0 35 ..................................... GTTACTTTTAATTCTTTTACTTCTTGTAAAACTTC 691815 37 100.0 35 ..................................... ACTTTCGGCGTGGGATTTTATCAGTGGGTGTTTGG 691743 37 100.0 46 ..................................... AAAACTACTAGAAACTGAGTGAATTTGCTTGTCCCGCACCCACTGA 691660 36 94.6 0 ................................-...G | ========== ====== ====== ====== ===================================== ============================================== ================== 35 37 99.8 37 GTTTCCATTAACCATTTCCCCGCAAGGGGACTGAAAC # Left flank : CGCCTGTTGGAAGATTCCCTTGCTGAAGCCATGCTAGCTGGTGAAATCAGCGAAGGTTGTACCGCCGTCGTGGATGTCGATGATGATGGACAAGTTAAGGTACGCGACTCAGAAAAACGCGAATTACTATTAGCAAATGCTGGTTAATATTTAAATCAGCAAAATAGTATGCCATAAAAACCTCTGGTACTCTGCTATCAGAGGTTTTTGATCTACAGGAGTGGTGTTGTAGACTGGATTAAAGAAAACACTCGACAATAGCAAATACTCATCCTATGATGATGTAATAAGCTTGATGATTGACGAGTCGAATCGAGGGCGAAAACCCTGGGGGATTCGTCAAAATCGCCAGAACCTTGACAACATAATAACTACAGCGTTTCTATTATTCGGGAAGTTGCAAATTACTCGCAATAAGGTGGGCTGAAATCGACCTAATTTTGCGACTCGTCAAAATGCTCCCCAGGAAGCTTGCTCTATATCAGTTTCAGTACCGAGCT # Right flank : GCAGCACTCATAGACGCTTTAGGTTCGTAGTAAAGACTTTAGTCCTTTTTTGAGAACTAAAGTTCTCACTACAAACCTTTAATTATTCACCTTGTTCGACTTATGAAAAAATTAATTGTTTGGACTACTAATTACGTATGACCTGGCTTTAGCTAGATTATGTGCTGCAATGCGAGGATGTTTATGATGGACATCGTGATGAATTGTTGCTTGAATGACAGTTGAGCCAAAAATTATTCCTCCCCAGGTTTCGATAATATTAGGAATTTTCATGGCAAACGTTCCGTATTCTCCTTTTTGGTGATGAACAAGACGGAAAAATACTATATCTCCTAGTCCATAAACAATTCGTAGAAACAACCAAAACCATAGAAATCTTTGTCCGCCTAAAAAAGCTAAAACTATTAAAATTAATAGTTTTATGAGTAAATCTATTCCTAGTTGAAAATTAATTCCATTGACTTTTATCCAACGAATAGAACTTTGCTCTGGTGTAATAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAACCATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1759833-1760160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================== ================== 1759833 31 100.0 39 ............................... CTTGGTTTTGTTCTCATGGTTGGTTTCCGAGACGTTTCA 1759903 31 100.0 44 ............................... CAGCAGCAGATATTGAAGAATTCAGGCTATTACTCGATGTTTCA 1759978 31 100.0 46 ............................... TGGGATTGGGGTTTTAACGGATAGAACTGCAAATGAATTTGTTTCA 1760055 31 100.0 44 ............................... CCAACATAAAGTAGATGGCTAAAACATCGCAGATCATCGTTTCA 1760130 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================== ================== 5 31 100.0 44 GTCCCCTTGCGGGGAAAAGGTTAATGGAAAC # Left flank : CTATCTGCGCGGTTATGGTTTCCCGTTGCCTTTCGGCTTCACAGCTTTCGCTTTTTGTAGCATCTTACTCCCACTGGAGAGTTCAGTCGGGATTGCTCCCTGCTTTACTGACAGCATCGTTTCTAGTTGTCAGACTCCATTGGGGTTACTTCATATCACACATCAGAGATTCAACCACTGCGCGTTCCTTCTATACACCGGAGGCGTTTTGATGTCTTATATTCTGAGGACAGGGCAGAATATCTCACCTCTTTTACTGTTTGGGCCGTTTTCAGTATTTCCTCTTCACGATGCCTCTTCAAAGGTTCACTTTCGTTAACCCATCAGTGGTTTTACCTTGGCGTTACGTCCACTCTTCGGCTTGCAGATTTTACGCTTTCCCCTCTAGCTCTGAGACACCGCAGTTACCCGCTATGCCCCTTCGGGTAGGTACTGGTTTAGACACTAACCAGGAGTATTTCTCAGATACTCACTCTCATGAGCGACTGATAGTCGCACCC # Right flank : CGGGCATTTTCTTATTTAACCTGAGTTCGGGTTAAGCAGATTGGGTTAAAATCCAGTCCATGTGAAGGCTGGGCTTCTTAGGTTGGTGGCAATAAGCGATTAATCCACACAGAAGATTAACGCAGAAATTGACAGGACTTCGATGTCGAGAATGTTCTATCTGAGAAATATTCTTGAGTTGGTCGTTAATTGTTTCAATAATGGAACGCTTACGTGACAAAAGCTTGTCATGGAGGCGCATTAACTTGTTTTTCATATTGCGACGGGGTTTGGCAAAAAATTCAATCCCGAATTCTCGAAAAAGTTGATCAGCCAGTTGTTGAGAGACATAGCCCCTATCAGCAAAAATTTTGCCAAAAAGACCAGTAAGTAAATCTGGGATAGGTTTTCTGTCGTCAATATTACCAGGTGTCACAATCGCATTTAAGATTTCACCATGCTCATTAACTACAATGTGGAGTTTAAAACCAAAAAACCAATCCACAGAAGTCTTACCCCTA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCTTGCGGGGAAAAGGTTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 1761570-1761163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 1761569 37 100.0 38 ..................................... CTAAACAATGCCCAACCTTCCCGTTCGTAGGGGATTTG 1761494 37 100.0 37 ..................................... TTGAGTTCTACTTGCATTTCGTTGAGCATATTTTCTG 1761420 37 100.0 36 ..................................... GAGCATCATTGAACGTTGGGGAATTCGCTCTCATCC 1761347 37 100.0 39 ..................................... AGGAATTACAGCAGTTACTTGACCTTAGTGAGTGGCAAT 1761271 37 100.0 35 ..................................... ATAAGATGTCTTGGGGATAACCCAAGGACTCGTTA 1761199 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 6 37 100.0 37 GTTTCCATTAACCTTTTCCCCGCAAGGGGACTGAAAC # Left flank : TCACATTAATTAGGGAAACAGATTATAAAGCTTGAAATTAGCGATTTTTCAAATATTTGCCATCAAATTTTTCGGATTACAAGCAGCATAGGCGGTAGATGAAGATGCGATCGCCTATCACCGAAGAGTCAGAGGGGAAGAGAGCAGAGGTAACAATGAAGAGTTTCCTTCCTACGCGAATGTTTTCAGGAATTAAATCTAATTCCTACATATTAAGTTCAGTATATTTTAGAATACAACTGCAACAAACACTCGACAATTGAAAATCCCTATCTTATCATTGGTTTATTAGCTTGATGTTTGGCAAGTCGAAGCGGGGTCAAAAACCCTGGGGATTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCAATAATTCGGGAAGTTGCAAATTACTCGCAATAAGGTGGGCTGAAATCGACCTGATTTTGCGACTCGTCAAAATGCTTCCCAGGAAGCTTGCTCTATATAAGTTTCAGTACCGAGCA # Right flank : TCAATTTCTATAATCTGCTAAATAACCTGAGTTCGGGATAAGAAAAGGGACAGGTAGTAAGCTGAAAATAGCGTTAAATCCAGCACCTGTCCTATGTCTAGTTTAGAAGCATTATTCTGCCACGTAGACGATTTCTGCGAAAAATTTGAAGCTCAATGGCAAAAAAGCCTACTCAAACAGGGAGGAATTCGGCGATTTAGGGCAAAAAGCTTATGTTTGAGTGAAATAATGACAATATTGATTGCGTTTCACCAAAATCACTACCGGAATTTCAAGCATTTTTATTTAGAACAGGTACAGAAACAATGGAGGTGTGCATTTCCAGGTCTTCCCAGCTATCAACGATTTGTTGAATGGATGCCATCTGTGCTGATACCCCTATGTGCATACTTGAAGCATTGCTTCGGTCGATGTACGGGTATCGGATTTGTAGACTCAACCAGCGTCAAGGTCTGCCATAATCGTCGCATTTCTAGAAATCATGTGTTTAAGGATGTTGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTAACCTTTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 4 1879661-1876938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 1879660 37 100.0 46 ..................................... CTATCTCATAGTCTAATCCATAGCCTAGACGGTCAGAGAGTAGAAA 1879577 37 100.0 39 ..................................... AAGCTTCAGGAGGTCAGCTAACAGATTTTAGACCTGGTA 1879501 37 100.0 38 ..................................... TCATAAGGCTAAAATAACTCCTAAAAGACAACTAAATA 1879426 37 100.0 43 ..................................... TGAGTAGTCCGCCATTGTTGTTGAGGCTGAACACCGCGAGGGG 1879346 37 100.0 37 ..................................... CTTTTGGCTGCGTTGGTAGCTCTTGCCCTCGCGGTGT 1879272 37 100.0 38 ..................................... AAGAAATAGTAATCAAGAAAAAGAGCTTTGTGCTTGAA 1879197 37 100.0 40 ..................................... ACATGAGTTAGAGAACTCACAGATGAAATCTCATGAGCTA 1879120 37 100.0 37 ..................................... AAAGTGTCTAACTGGTTTACACGGCTGATACTACCAG 1879046 37 100.0 34 ..................................... TCCCAAGGCTGCCCCAGTGGACTCTACAAACTGG 1878975 37 100.0 34 ..................................... AGGCTAGGACGTATATAGAGACTTTAGGGGTTAA 1878904 37 100.0 36 ..................................... GCTGGTTCTGGGATGTCCTTGACATACTCCCTTACC 1878831 37 100.0 40 ..................................... ATTCCAGCAATGGCGATTGTTACAGTCAAGCATCACAAGA 1878754 37 100.0 36 ..................................... ATCACAGCCTCTAGTCCCTGTCAGCCATTCTCTATC 1878681 37 100.0 37 ..................................... CAGGCAGAGGTGCAAAAGGCCACCACCGCGGCCAATG 1878607 37 100.0 34 ..................................... CCAATGTTGATTCTTGCCACAGACCCGCCTAGAA 1878536 37 100.0 37 ..................................... CCAACAGTCTTAATAATGGCAGTAACAACGGCAATGA 1878462 37 100.0 35 ..................................... ATCTCAGCCTTTGAAGGTACAGCAGATAGCATGAT 1878390 37 100.0 40 ..................................... ACCAATCTACATATTAACGACACCAAGTTCGGCTGGGGTT 1878313 37 100.0 44 ..................................... GCAACAAGCATTTCTCGTCAAGCAAGGTTTCGTCCCCAGAGAAG 1878232 37 100.0 35 ..................................... TAACTGGAGTTTACTAGCTGGTGCCAGGATTCCCG 1878160 37 100.0 38 ..................................... GCTAAAGCCAAGCTGCCCAATGCGATCAAGTCCCCAGG 1878085 37 100.0 36 ..................................... AAAGAACTAGAAAAACTACAAGAAGAACTAGAAGAA 1878012 37 100.0 38 ..................................... ACAGGCAAGGGCTAGAGAATCAGCATCATCATCTTTGT 1877937 37 100.0 37 ..................................... ACCACCTCCAAGCCTTTGGCGATACTTTCATCGTCTT 1877863 37 100.0 36 ..................................... TCTTCAGAAGTTTCAGAAGATTAATTCTGATTTTGC 1877790 37 100.0 42 ..................................... GCGGGATTATCTGAAATGGGAATTGTTAGTAGTGTGGCGATG 1877711 37 100.0 36 ..................................... TTACATATCCCTGTCTAGCGGCTTCTAAAGGAATTC 1877638 37 100.0 36 ..................................... GACTATAAATCCCGCCCCTAAATCGTCTGAGGCGTT 1877565 37 100.0 40 ..................................... AAACACAGAGCGGGCGAGGTTCATATCGCCCTGCTGTAAA 1877488 37 100.0 36 ..................................... ATTCTAAATTAACTATTCTAATTAATGATTTTTTAA 1877415 37 100.0 36 ..................................... CTATCCATAGGATTAGGGATCGCAACCAATGCACAT 1877342 37 100.0 37 ..................................... TTGCCAAGCTTCAGTTAGGGCGAATGTCACTGGTAAA 1877268 37 100.0 37 ..................................... CCCTGAATAATAGGCTTGGTATGAATTACCCTTTTTA 1877194 37 100.0 38 ..................................... ATGTTTCGATTACTTGGTAGTGAATTACCACCTGTAGC 1877119 37 100.0 36 ..................................... TACTATTTTACTCATTTTATCACGGTATTTAATTTT 1877046 37 100.0 35 ..................................... GATCCTAAAAAATTTGATGCACAACATTTACAAAA 1876974 37 91.9 0 ......................G.........A...T | ========== ====== ====== ====== ===================================== ============================================== ================== 37 37 99.8 38 GTTTCTAAACATCATTTCCCCGCAAGGGGACTGAAAC # Left flank : ATACCAATATTTCGGATGCGTGTTCGGGGAATCATAACGACTTCCTTTTTTAAAGCGACAAATACTTACTGTCGATGCAGTAACATATTTTGTATTATATATGTAATACAAAAGAAAGACAAGACTGAGAACAGAGAATGCTATTGATTTACTCTAGCTATACCATTTCGTACAAAAATTAATACACCTAGAGTTATAGAGTTTCTGTAAGGGTTGTCACTTCATTGTTTGTGGCTAAACTCCAAAAAATACTCGACAATAGCAAATAGTCATTTTATGATTGGGAAATCAGCTTGATGTTTGACGAATCGAAGCGGGGTCAAAAAGCCCAGGGATTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTATAGCGTTTCTATAATTCGGGAAGTTGCAAATTAATCGCAATAAGGTAGGCTGAAATCGACCTGATTTTGCGATTCGTCAAAATGCTTCCCAGGAAGCTTGCTCTATCTCAGTTTCAGTACCGAGCA # Right flank : CAATCCTTGACTAGATGTTATCTCCGAAGAAAATTGCATTTTTGCGGTAGAGTTGCAATTTATGACACCCATCTGCAAAAATGAGAAGAATATGAAAAATCTCTAGTAACAAAACTACTGCCTGTGAAACTTGACTCTGCACCTGTAATCCTAACTGGCGTATCTGCGTCTAAGAACCAGCCAACATTAACAGTGACCACCGAATGTAGCACAATTGAACCGATTCAGCCTGTAGTTAGTGCTGAGAGCCAGAAAAAGCAAGATTCACCACTTATTGTTTTCGCTACTACTTTTATTACGATTTTTCTCGCAGAAATTGGCGATAAAACCCAACTATCAACTTTATTAATGAGTGCAGAATCCCATGCACCTTGGGTAGTATTTCTCGGTTCTGCGGCTGCACTGATTACCACCAGCTTATTAGGTGTATTGTTAGGTAGTTGGATTTCTAAAAAATTCAGTCCCAAAATTCTAGACAAATCAGCCGGAATCATGCTGCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAAACATCATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 5 2116663-2115351 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 2116662 37 100.0 39 ..................................... GGGAGAGTTGGCGCATTTGCTAGCAATCTTGTCGGTAAA 2116586 37 100.0 40 ..................................... AGATATTCGCAGACAACGTGGGAATATTGCTTGAGCATGA 2116509 37 100.0 37 ..................................... ACGAAGATGGCGACTATGAAGATGAAGACTATGAAGA 2116435 37 100.0 37 ..................................... GACAAGCAACTACAAGCGGTTGTAGAAACTATAATTG 2116361 37 100.0 35 ..................................... TAACCCACATTTAACACTTCAGAAAGCTGTTGTTG 2116289 37 100.0 39 ..................................... TCTAGAGAAACTAGATACCCCCAAGCTGCCGCAATTATG 2116213 37 100.0 38 ..................................... ACTAGAAGATTACCTTGGGAATCTTGTACGGCTTTAGG 2116138 37 100.0 44 ..................................... ATTTATCCTCTAAGAAAATTGGCAAGTCCTGGCGCATCAAGAGG 2116057 37 100.0 38 ..................................... TTGATCAAAAAAGGGATGACCGGGCAGTATTAGCCCGG 2115982 37 100.0 38 ..................................... GTATATTAACTGATGAGTCGAACTTTTAATTATGAACG 2115907 37 100.0 37 ..................................... ACGATGCCGTTAGACCATTTTTAAAGATGAGCGAAAA 2115833 37 100.0 37 ..................................... ACCCCGCCGCCAATGCGTACTAGGCGAAGCGTGAGTA 2115759 37 100.0 35 ..................................... TTTGTTTTGCTCTTAGGATTGTAATTGCAAAAAAA 2115687 37 100.0 39 ..................................... AGAACATCTAAAGCATCCTTCAAAAAATCACCACTTAAA 2115611 37 100.0 38 ..................................... TAAAAAATCGAGACGATCACCCCCGATCACCCGACGAT 2115536 37 100.0 39 ..................................... AAACGAAACTTTGATTTAGCGTACGATTTTTCATCTTGC 2115460 37 100.0 36 ..................................... ACTAGTACGGCATTTTTAAATCGGATAACTGGTAGT 2115387 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 18 37 100.0 38 GTTTCCATCAACCATTTCCCCGCAAGGGGACTGAAAC # Left flank : TTATTTGATTATTTACGACTTGCCAGACAATAAAGCGGCAAATAAACGCCGCACGCGGTTGCATAAAATGCTTTCTGGTTACGGCAAATGGACGCAATACAGTGTATTTGAGTGTTTTTTAACACCAGTCCAATTTGCTACACTACAAACAAAAGTCGAAAAACTCATCAAATCTGAAGAGGATTCTGTGCGAATATACGTACTAGATGCGGGCGCAGTGAAAAGAACTATTACATATGGTTCAGAAATACCTCGACAAGAACAAGTTATAGTCTTATGATGGGTTTACTAACTTGATGTTTGACCAGTCGAAGCGGGGTCAAAAACCCTGGGGATTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCAACAATTCGGGAAGTTGCGAATTAGTCGCAATAAGGTGGGCTGAAATCGACCTAATTTTGCGACTCGTCAAAATGCTTCCCAGGAAGCTTGCTCTATATAAGTTTCAGTAGCGAGCA # Right flank : CATTCGTCAGGATGGATGGTAACGGTGTAGTGCCAGTCCAGTAGGGTGCGTCAGTGTAAGAAACCTTCGCTATACCTAGATATTCTTTGTACTGACGCACCCTACAGATGGAAGATTTTTTTAGTTGGAAGTTCCTTACGGAAGAAACATTTTTTCTCACCTATACCCTTGTATTTCTCAGAATTGTGCCTACTTACTAAGGCAGCATACCGGCAAATTGCTTTTCAACGGCTTTAGGGTCTTGTCGAACACCTGCAAATACTTGCTGAGAAACTGGGTCAGGTTGCACATCTTCAACGCCCTGTTCTACTGCTTCCAACGTAGTTTGAGCAATTTGAATGGGGGGTACTTTATCCAGGGGAACATTTTCAGCCATTGCTGTATCAACAGGGCCAGGAAAGACACCTACAACTAGTGTGCCTTGTTTCACTAATTCTGCTCGGATTCCCTGGGTTAAAGAATACAACGCCGCTTTTGATGCACTATAAGAACCAAAAACT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCAACCATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 6 2262107-2263580 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================================================================================================== ================== 2262107 37 100.0 35 ..................................... ACTTTGATTGGAACTGGGCAATAATTGGGCTAAAT 2262179 37 100.0 40 ..................................... GCCTTCAGGGACTTAGCCAAAGTATTGTGATCATTTCTAA 2262256 37 100.0 41 ..................................... CCTCCTCCCGTGTGGCGGGTCGCGCCTCCCGATACCACAGG 2262334 37 100.0 35 ..................................... GTTCAGCTACCCGTTGCCTATCCGCATCCACTTGT 2262406 37 100.0 41 ..................................... ATTGCTCTCGCGCCATTATTGCCCCCCATACTTAAAAGTTG 2262484 37 100.0 35 ..................................... TCGAAGGAGGAAAGGCACTCCGCCGAATTCTCCAG 2262556 37 100.0 36 ..................................... ACATCACAACAAAATCATCAATAAAGTGAATCAACC 2262629 37 100.0 39 ..................................... CTGCCAATGGCGTGGCTAGTCTTGATGGTAGTTCCTTAG 2262705 37 100.0 37 ..................................... CATTTTAGGACGACAACCTAGCTATTTACAAACATTC 2262779 37 100.0 39 ..................................... AGGTAGCGATCGCACTTAGCGCGTGTAGGGAATCTTTCA 2262855 37 100.0 42 ..................................... GTAACAGCAGCAGCAATCCCACCAAGACTAGTGATCATAGCA 2262934 37 100.0 37 ..................................... AAATTGTTCTTTGCGATCGCTATGTCTGGTCTACGAT 2263008 37 100.0 36 ..................................... ACGCTGAACGGCAGAATGTCTAAGTCATTGAGAATG 2263081 37 100.0 37 ..................................... TATTGATTTTTTCATCAATCTCGCTAAATATGCTCCC 2263155 37 100.0 36 ..................................... TACTTGGTTCATCTCAAGGCAGAAGCGGATTTGCTA 2263228 37 100.0 37 ..................................... GCAACTGATTAAAGCGTTTAACACTAAACCTTCTTGA 2263302 37 100.0 35 ..................................... TTGTCAACGGCAGTCTGAACGTCTGCCGGAACTGT 2263374 37 86.5 133 ........T..C.T..................A...G CCAAAGACAATACAACATACCTCTTGCAAAAGTAATGAGCCTAGCGTCCTTCTTTGCGACTTTGCGCCTTTGCGCGAAACAAAAAAATTATTTATTCAAGAAGTCTAATAAATCACCCCAATAATTGCTACTT 2263544 37 81.1 0 ...C...AAC.C....................A...A | ========== ====== ====== ====== ===================================== ===================================================================================================================================== ================== 19 37 98.3 43 GTTTCCATCAAACATTTCCCCGCAAGGGGACTGAAAC # Left flank : GGGCGGCTGGTGCATTAACTTTGACCACGAAACGCGGGAATGTCGCATTTATGCAAACCGTCCGCGCTTTTGCCGTGTAGAAACGACGATATTTGAGGATATGTACGGAATTGAGCCAGAAGAACTGAATGATTTTGCTATCGAGTGCTGTCGTCAACAAATTGAAGGGGTTTACGGCGATCGCTCTTTGGAAATGTTACGTTTCGATAAAGCTGTAGGTTTCTAGCTGTCTGATGAAATTTCTCCATACTCTCGACAATCTTCAATACTCGCCCTATCATGATGGAATCAGCTTGATGTTTGACAAGTCGAAGCGGGGTCAAAAAACCCAGGGATTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCAATAATTCGGGAAGTTGCGAATTACTCGCAATAAGGTGGGCTGAAATCGACCTAATTTTGCGATTCGTCAAAATGCTTCCCAGGAAGCTTGCTCTATATAAGTTTCAGTACCGAGCA # Right flank : AATCGAGAATATAAATTTACAGGTATAGTATTGTAGAAAACTTTACATAAATAGGCAAATTTTGCTATTTACTGTAAATTAAAGAGTCATAGATAGCATAACTAATGTGTAGAACACTGACTCAGGATTCATAACCCCAAGAGCCAAAATCAATTTACCATGACTCAAGTGCTGCAAGTCGGCGATCGCAAAATCGAAGCTAGCGAAATTATCCCCTTACTAGCTAATTATCAATTACTACCCCAACTGCTACGGGAAATAATTATTGACGAAGCGATAGTAAATGTAGAGTGTAATCCTGAAGAAGTCGCCCAAGCTAAACAGCGTTTTTATGCTGAAAGACAGTTAACCCAAGCAGCCGAAATTCAAGCATGGATGACGCAACAAGGGTTAAGTTCCGAACAACTAGATAATCTGATTTCTCGTAAAATCAAACTAGAAAAATTTAAACAACTCACTTGGGGTAACAAACTAGAATCTTATTTCTTTCAAATGAAAGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.49, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCAAACATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 7 2659848-2659277 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 2659847 37 100.0 38 ..................................... TACCTGGTTAAGGTAGTATTGACCATTCTTATCAGAAG 2659772 37 100.0 42 ..................................... TTATTTAAGTTAACTCCAGGCTTTACTACACCACTACTCAAG 2659693 37 100.0 42 ..................................... ACTCAAAATTAGTAACTCTGCAAAGAGAAATTAGGAATCTTA 2659614 37 100.0 42 ..................................... CCTGTATACTCACCCATTAGATTATCCAGATTGAAGTATCTA 2659535 37 100.0 42 ..................................... TGTCCTCTCTGATAACTTTTATGATAATGATACTTCTGAATA 2659456 37 100.0 32 ..................................... GTTTATGTAGGTTTCTCTCATAAGCTGCTAGA 2659387 37 100.0 37 ..................................... CTCCATCTTCTGAGTTAGGGAGCCAACTATTTGGTAA 2659313 37 83.8 0 ..............C................TT.CTA | ========== ====== ====== ====== ===================================== ========================================== ================== 8 37 98.0 39 GTTAAACACCACCTTTTCCCCGCAAGGGGACGGAAAC # Left flank : TTGTAGGGGCGGGTTAATCAAATATCATAAACAATTAACGATGATCTCGCTGAACCCGCCCCTACCGAGTCTCATTAGCTCCAAGCATAAGCTATTTTTTGGATATAGAAGATTTTCCTAATTCACATTACTCATTACTCATTACTCAGGATTATTGACTTTTGTAAAGTTCGTTGAGTGCTTTTTAGTCGGGTTTTACTGGCTGGAGTTGATGATTTTAATAGTGTTTAGCGGTTTGTAACGGAATGTAAATTTGGCTGTAAGTTTGTCGCGCGGATTTATAAGAAGTAAGGATGAGTAAAGTTGTGTAAATAAAAGAAAAGTTTGTTTTTTCGCCTTGACTCCTGGAAGTTTTTCGTTTAAATTATTCCTAAAGCTAATTTTTAACGAAAAAAGCTTTCGAGATTTTATACTGATCCTGTAGGTTACACCTCTGTCTCCGTACCTCGGCGCAACTGAACCTTGAAAACTAAATATATCAATAGTTTCCACATGGTAGG # Right flank : CTGCACCAAATCAATTTTGATAGATTGCGGATGTTCAGATACCCAACTTTTTTAAAAAAGTCGGGTATCTATGACACGTAATAATTTGTGTGGCGGACTACTACCGTGTAAAGACAATCTTGAAAATTCCGCCTTCAAAGTGGTTTTGTCCGCCTAGCTCTTGGCTGTAGGATATATCCAGAAAGCCTGTCACCATAATTCGTAATTAATTACGAATTAGTAATTAGGACACTAGCACGAATGTATTAAACACCTGCACGACTGGTTTGACCACCTAATCTTTCTTGAATTTTGGCTTTAGCAGCTTTAAATTGTGTCGCTAACTGCTCACTTTGGTCAGAACTGAGATTGTTACGAATAGCTGCAAACATGGTGTTTTCTTCTTGACGAACGTGATCCATCACGATGTCTGCTAACTGTCTAACTCTATCTTTAAATTCCGAGCTAGAGGGACTCAGAGCTTTGATTTGCTCTAACATCCGCTTCATTTCTGCTTGCTC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACACCACCTTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 8 3760342-3761400 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3760342 37 100.0 37 ..................................... ATTTGACTGGTAAGCATTAAACTGGCCGCCAGCCCAC 3760416 37 100.0 36 ..................................... AGAAACTCAACATTGCCATTCACGCCCAATTTTTTA 3760489 37 100.0 36 ..................................... ATTAATTCTTGCTTGTTGACACTCCAGCATTCCCCA 3760562 37 100.0 35 ..................................... AAGCAAGCCGAAACACCCAAACATTTCACCAAAAA 3760634 37 100.0 35 ..................................... CTACTGTAAATGTGTCACGAATATAAGGTGAAGTG 3760706 37 100.0 36 ..................................... GAGTCTTCACCTTCTATGAGGGTGAAGCTATTATTT 3760779 37 100.0 35 ..................................... AACAAGTAGGCGAAAAGTATTTTTGTAAGTATATG 3760851 37 100.0 36 ..................................... TTTGCGTTGAGCGATCGCCAAGGGGAATTAGGCGAT 3760924 37 100.0 37 ..................................... GGTTTAACCAAATCAAACTTCACTACGTCAATTGGCA 3760998 37 100.0 35 ..................................... GTTGACCAAAAGAAACTCTTAGCAAACTTAGATGT 3761070 37 100.0 40 ..................................... CTTCTAGGTCAGCCATCACTAACTTATCGGTTGACGGCTG 3761147 37 100.0 35 ..................................... TCAAACCAACTAGTAGGAGTGTTGTAGCTGACTTG 3761219 37 100.0 35 ..................................... GATAAATACTACACTGGTTTCATTGATTCAACAGC 3761291 37 100.0 36 ..................................... TGTAAGCCTTCCTATTGCTACTGGCATTGTCTTTCA 3761364 37 89.2 0 ................T....G.A...A......... | ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 99.3 36 GTTTCAACGACCATCCCGGCTAGGGGTGGGTTGAAAG # Left flank : TTTAATTCACTAATCCGAACCTTGAAAATATAATATTTTTATAACAGTGCCGCAGTTCATGCTCTTTTGAGCCAATGTACTGTGAAAAATCTGGGTTAGTTTGGCAGTTGGAAGATTGTCATGCTTTCTGACCCTGGTAGCTGCCCGCTTCTGATGCTGCCATCTGTAGCAATCTATGGATGGGATAGGTGCGCTCCCAGCAATAAGGAGTAAGGCTTTCAGCTGTAGCCGTTATTTATAACGGTGTGGATTACCACAGTGGTGGCTACTGAATCACCCCCTTCGTCGGGGGAATCCTCCCAAATATTTTTCTGGCGAATCAAAGCGGGGTCAAAAACCCTGGAGACTTGCCAAATTCTGAAAACCCTTGTCCTGTATTGAATTAAGAAATTACTGCGTCAATCGATTTACTTTTTTCATTGTCAGCAGAAGCAGCTTTTTAACAGACTTGTCAATTAGACATCTGAAAAGCTTGTATAACAAGGGTCTAGGCGGGAACA # Right flank : GAAATTTTTTAGTATTACAATTTTGGCGGGAGGGTTGAAAGGCGCACTTCGTTCGGGATTATTCTGGATATTTGCAGGTATGTTAAACTTCGAGAAAACGGAACCTCAAAGCAGCCCCAAAAAGATAGTCAGCGACATTAATTTGTTAACGACTTTGACAGATGCTTTGACGACACTAATTCGTTAACAGCGACATTAATTTGTTGATAACGACAAGAATCTGTTAACGACGACAAATAATTAGTTATTCTACAACAACAAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGAAAATTTTCACACACCCCTAAACATAGCACAAATTCTGAATAGTCAATAGTCAATAGTCATTAGTCATTAGTTTTATCTCCCTTGTTCCCAGTCCCCATTCCCCCATATATATAGATATAGTGAAATGTCTTCAGCGAGGAATTTGCTTGCTAGGATTAGATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGACCATCCCGGCTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 9 3775407-3776476 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 3775407 37 100.0 38 ..................................... CCGTAGCCTGCTGTACCATTCCCTGGCTCAACTTCTAA 3775482 37 100.0 34 ..................................... ACAAAAAAATTGAGGAAATTGCCCCGCCTGACGA 3775553 37 100.0 42 ..................................... TAACTTTGTAGTGGCAGGTGATGTGAACCACATCCTTGTGGA 3775632 37 100.0 33 ..................................... TGATCCTTGGGTCAAAAACAACTAACCCGGCTG 3775702 37 100.0 38 ..................................... GTTAGTAGCCCTAACATTAACTACCTACAAACAATCTA 3775777 37 100.0 34 ..................................... TAATTCATTCCTTGCGATCGCCCACAGTCTTTTT 3775848 37 100.0 36 ..................................... ACTACTTCTGGGACTTCTGAGCCGTAACCTTGTAAC 3775921 37 100.0 38 ..................................... ATTTAAGTTCTGCCCTACTGAGTCTATCAAGCCGTTAA 3775996 37 100.0 37 ..................................... CTAGTGCTGTTTTCTCCGGTATCTTAGATATCCTCAA 3776070 37 100.0 37 ..................................... TTCCCTTGGCGCATAATCCAAGTTCCAAATTTTGTAG 3776144 37 100.0 36 ..................................... ATCTAATACCGATATAACCTATGATGTCATTTCTCT 3776217 37 100.0 39 ..................................... ATTGAACTTATTTTTATCTAAATATACTTTTATGTTTTC 3776293 37 100.0 38 ..................................... ATCCCCCAAATGCTCTGCTTGGCGATCGCCGTTGAAGT 3776368 37 100.0 35 ..................................... TCTAACCTGTGGGTGTACCCTGTTTTTGCTGCACC 3776440 37 91.9 0 ............................A...A...A | ========== ====== ====== ====== ===================================== ========================================== ================== 15 37 99.5 37 GTTTCCATCAACTATTTCCCCGCAAGGGGACTGAAAC # Left flank : GTTCCTGTAATTTGTGAAGGTGGAATTTCTTCACCGCAAATGGCGCGCAAGGCTTTAGATTTGGGTGCTGATGCTGTGGTAGTAGGTACAGCTATCACTGGAATTGATTTGCAAGTCAAAGCTTATGCTTCTGCTTTGCTGATTAATTTTGATTAAGTTTTAATTATGTGATTTTTCTGTTAAAAACCTGATGTACATAGACTTTCTGTAAGGTTTGTATCTTGCTTACTGTGGTTCAACTTTAAAAAATCCTCGACAATAGCAAATAGTCATCTTATGATTAGGTAATCAGCTTGATGTTTGACAAGTCGAAGCGGGGTCAAAAACCCCAGGGATTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCAATAATTCGGGAAGTTGCGAATTACTCGCAATAAGGTGGGCTGAAATCGACCTAATTTTGCGATTCGTCAAAATGCTTCCCAGGAAGCTTGCTCTATCTCAGTTTCAGTACCGAGCA # Right flank : AAGAAACCCAGAGTTTGACAGATTGTCATTTGACGCGGTGATTAGTGGCGATTTAGCATGACTTTTGAGTGAATCTTGGGGGAACTGATGCAGTTGGCTATCAAACTAACAAAGAGTGTGCTATCAAAAATTGCGATCGCTACTACTACCACCACCATAATTTTTCATCATGCTCTAGGTTTAGCCTCTGCTGCTCCAAACCAAGAAATTACGATTAAATTTGCCGCGAAAGTTGCTCAAAAACCCTTTGAGTGTGGCAAAATATACACTTTAGGAAAACCAGCCACCAAAGTCACCGCTTCTGACTTCCGCTTCTATGTCTCTGATGTGGCTTTGATTGATATTAATGGCAAAGCTACACCCCTAACCTTAACCCAGGATGGCAAGTGGCAATACCAAAATGTAGCCCTACTGGACTTTGAAAATAAAACTGGTAGTTGTGCTAATGGTACAGTAGAGACAAGAAACCAAGTAATTGGTACTGTACCCCAAGGCAAATA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCAACTATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 10 4537835-4539431 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 4537835 37 100.0 34 ..................................... GTAAATTTTGCAGATTTACAGTTAATCCCTCTGG 4537906 37 100.0 37 ..................................... TTTAAAAATCGAGTTTGGATGACATTTTTGTTGTTGT 4537980 37 100.0 40 ..................................... TAGTAGTCAGGAACTTAGCAGTAATAGCCGCCGAATCAAC 4538057 37 100.0 39 ..................................... TTCGCCCCGTTTCATCTTGAACAAGATGGATATTTAACT 4538133 37 100.0 34 ..................................... CTAAGGAAGCCGAGGAACTGCACTTTGGGAACAC 4538204 37 100.0 36 ..................................... CATTGCAAAAAAGCTGATAGTTGCGAGAATTGCGAT 4538277 37 100.0 37 ..................................... GGTACAAGTAATACACAATTTAATACTTCTTTATTAG 4538351 37 100.0 35 ..................................... TCTGTATCATCTTTCAGACCATCAATTGATTTGTC 4538423 37 100.0 39 ..................................... CCAGGTTGCAGTTTTCAGAATATGAAATGCAAGGGCAAG 4538499 37 100.0 36 ..................................... CGGCAATCCCTCAAATATGGACATATTGTACTACAA 4538572 37 100.0 38 ..................................... TTATACTAATAAACATCAATTTCAGATTTATACCAAGG 4538647 37 100.0 36 ..................................... GACTAGAAACAGCAACAATCAAACCAGCAGCACCAG 4538720 37 100.0 37 ..................................... AGAGTGTTTTTTGAAGTAAATCTGGGGGTGTTAAGTT 4538794 37 100.0 48 ..................................... GGGCAATGTGCAGAAACCTTCAAACCGGCTGCGGTAGGCGTGCCATTG 4538879 37 100.0 37 ..................................... GTCCCAGCCGTGCCAAACGGAGAAACATAGCCTGTTT 4538953 37 100.0 35 ..................................... TATGAAGTTGCCAAACAGGGTAATTTTTCAGGGTT 4539025 37 100.0 34 ..................................... TAGCACTAACAGCAAGAGAATCTGATTTATTAGC 4539096 37 100.0 42 ..................................... GTTTCCTCAGTCCCAGAAACATTTACCTCAAAGTCCCCAACA 4539175 37 100.0 36 ..................................... TAGCAGAAGTTTTCGGGGGTAGATTTGTAGAACGAG 4539248 37 100.0 36 ..................................... AAATAATTTACGGCAAGCGCAACTTGGCATCTCGTC 4539321 37 100.0 37 ..................................... TATCCTTAGTTGTGTACCTAGTAGATTTCCTAGAAAA 4539395 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ================================================ ================== 22 37 99.9 37 GTTTCCATCAACCATTTCCCCGCAAGGGGACTGAAAC # Left flank : TCGGAAGGTGTTTCTTGTAAGGATGGCAGAAACCCTGTCAAAAACTCTTGTGTTTCTGCCTGGGTTTTGAACATTTTCCAGTTACCGGCAATAACGATTTTTCGCACAGGTGATTTAGTCAAGTTCTTAACGCTACTAGATGCACTTTTCAGTCTAAAACTTTTTGGGATGTAATTAGCATCTTAATTCCATTTCCAGCAAAACCTGATACACATAGATTTGCTGTATGATTCTTAATTTTTAAGAAAACCCTCGACAGTAGCAAATAGTCATCTTATGATTAGGTAATCAGCTTGATGTTTGACAAGTCGAAGCGGGGTCAAAAACCCCAGGGATTCGTCAAAATCGCCAGAACCTTGACAACATAATAATTACAGCGTTTCAATAATTTGGGAAGTTGAGAATAACTCGCAATAAGGTGGGCTGAAATCGACCTAATTTTGCGACTCGTCAAAATGCTCCCCAGGAAGCTTGCTCTATATAAGTTTCAGTACCGAGCT # Right flank : TATCAGCAGACAATTTTCTATAGCGATGAATACCGTTTCTAGTGAACAAAATCTCTAACCATGCCCTACAGTCAATTTACAAGCTATTTTAGAGGATTTCCTTGAGCGATCGCTGTTGATACAGAAAAAGCACGTTCTGAGGTCATTATCAATTTTGAGTTTTTTGGTATGGATGGTGCAAGTGGGTTGAATAATTTGATGTAAAGTGATACGTGTGGCGGCTTTACTCACACATCTACTGTATGCAACCCCATTTATTAGAAGATTTAAGTCATCAAATCATTCCCAATCCACCGATACTAACAAGTAAAGCATCTGGATGGCAAAATGTTTTTTTGGCTTATTATCAACATCCAGGGGCAGAAATTAATCAGCATAATATCCCATTTCATATATTAGAAGTTATAGATTCTAACTCCAGTTCAGACCATGAACGCCGCTTAGATAATCAATTTTTATCTTATAAGCTTAGAGGCAATGAAACCTTTTTTTGTCCTGCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCAACCATTTCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 11 6629530-6629058 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 6629529 35 100.0 37 ................................... GAAATTATCTTTTGTTAATTCGTCAGCCGCCTTATCG 6629457 35 100.0 36 ................................... CTTTCAGTTTTTTTCGTTAGCAAAAAGAGAACCAAC 6629386 35 100.0 39 ................................... TTTGCAAAATCAACTCTAATGCTTTAGTGGTGCCAAGAG 6629312 35 97.1 36 ......T............................ CCTTTATAAAGCGACACCGTAATACTTCCAGTAATA G [6629301] 6629240 35 100.0 40 ................................... TTCAATTAATTCCTGGTTGGATCTTCTGCGGGATCAACAG 6629165 35 94.3 38 ....................TG............. AAGCCTAACCCCGTGTAAAAGTTAGGGACATTAGTAAA 6629092 35 88.6 0 ..........................C....GTG. | ========== ====== ====== ====== =================================== ======================================== ================== 7 35 97.1 38 GTTTTCCATTTATTCCCCTTCACGGGGACGGAAAC # Left flank : TGAAAACACGGTGACATCGGTAGCTTTTACACCAGATGGTCAAAGTTTAGTCAGTGGTAGTGAAGATAATACTATTAGGATTTGGCGAGTTAATCAGTAGGGATTGGGGATTGGGGATTGGGTAAGATTTTTGGTCTAATTTGGGTTAATTAGTAAAGATTTATCTCAGGTTGATGGTTGGTGTGATTAACTGCTTTAGGTCATCTGTTATACTCTCTGGCAAGAGTGCAGAACCATGACAATTTCATAAAAATGTTTCCCAATAGCAGCGATGAGTGTTTGTTTTAACAACTCATACGCAAATTTTTAGCGGTGGTAGGGCGATCGCTCAAACTCTGATTCTTTCGTTGACCCCCGCGAATCGCTTACTAGGCAAAGGTTTGAGTAGGGTATATAGATGCTTTATTGTCAATAATTTATGATTATTGACAGGTAAATTAGACCCCCCGCTAAAATGACTATCTCAAACCCTGTCACAGTCACGATTCTAAAAGGGTAGG # Right flank : GACTATCAGTCGCTCATGAGAGTGAGTATCTGAGAAATACTCTTGGTTAGTGTCTAAACCAATACCTACCCGAAGGGGTATTGCGGGTAACTGCGGTGTCTCAGAGCTAGAGGGGAAAGCGTAAAATCTGCAAGGCGATGTGCTTGTGCAAACACAAAATTGCTTTTATCCTCCGATACACTCAGTCGGATTAGTAGATGAATCTGAAGACGAGGTATTGAGTCTTTGGTAAGCGTTCGGGTTTGCTAAAGCCGGATGCAGGGTAACTTGCTTGTCCGGTTTGTCGGGAGGAAGGGGATTCCAACATCCCTGCCCTACCCATTAAACCCTCCTGTTGTTGATTTTCCATAACTCCACCAATTGTTAAACACCACCCTTTCCCCGCAAGGGGACAAAAACATTCAAAAGAAAAACACTATTCAATAGCAAAGAGAAATTATGTCAAACATCATCTAAAAACTCACAGTCCACAACTCCGATATGCCACCATGAAACGTAAA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCATTTATTCCCCTTCACGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 12 6636296-6638066 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023278.1 Nostoc sp. CENA543 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================================== ================== 6636296 37 100.0 48 ..................................... CATCAAAGCACTTGTGGCCATTAGGTACGTTATAAGAATCTTGGGGAA 6636381 37 100.0 38 ..................................... TGAGTATCGTTCTTCCATGCTTGGATGTAGTTACTAGG 6636456 37 100.0 43 ..................................... GGCACTAGCCCGATCATCATCAAACTTCAGAGATTTTAGGGTA 6636536 37 100.0 44 ..................................... TTACCGTCTAAGATTACTTTATCGCCTGCTGTAAACATAGGTCA 6636617 37 100.0 41 ..................................... AACCCTTAAAAGAAAAATAGACAATAATCCCCTAGAGTTCT 6636695 37 100.0 38 ..................................... TTGATAACGGTCTCTTGTTCAAAAATATTCATATATAG 6636770 37 100.0 45 ..................................... CAGTATCAAGGGAAATTTGAATAAGTAAACCTAGACAAAATCTAA 6636852 37 100.0 37 ..................................... CTTAAATACAAAAATGTACAAATAGAATTAAAAGTAG 6636926 37 100.0 49 ..................................... TACAGCACTATCTTTAAGATTAGGAGAGGTAGCTGAACAGGCTATTCAG 6637012 37 100.0 43 ..................................... AGGCGTTGGCTTTACTATTGGACACCAACGGTTCGGCTAACGT 6637092 37 100.0 36 ..................................... ACATATCATCTCTTGTTTTACAAAAACTTTGGAAAG 6637165 37 100.0 34 ..................................... CTATGGGGTCTAGTGTGTTGTCTCTACCATAGTT 6637236 37 100.0 44 ..................................... TATAGTTTTCAAAAAGTAGATGACTTAATTTGGTATGTAAATGA 6637317 37 100.0 36 ..................................... CTCATATCTTTTGTAGCAGTCATACAATAGTTTTCC 6637390 37 100.0 38 ..................................... TCCGAAACCGTGGTCTTCAAGCACACAACAAGTTAACG 6637465 37 100.0 48 ..................................... TCTGAATGTACTCAGAAGACAACCTGAGGTTATTAGTGTAGTGGATGG 6637550 37 100.0 41 ..................................... TACTTGTAAGGAAAATCGGTTATCCCTATGATCGCACAGGC 6637628 37 100.0 41 ..................................... TTCCTTTATTTGTCTGTCAAGGGTTCCCAGCAGAGAAAAAT 6637706 37 100.0 44 ..................................... TTGCTAAGTTATCAACTGGGCGATCGCCCGACGAAGTAGCAGAG 6637787 37 100.0 53 ..................................... ATGATAGCTTTCATTATCTTCTCAGCTTCAGGCATATGAGAAATCTGTGCTAG 6637877 37 100.0 38 ..................................... AACAGGGTATGACATTTACCCCGTAATCTTGACGACTT 6637952 37 100.0 41 ..................................... GCTGCGTTGTATGCGAGTTGAGTTGCAAAGGTTGTCTTACC 6638030 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================================== ================== 23 37 100.0 42 GTTAAACACCACCCTTTCCCCGCAAGGGGACGGAAAC # Left flank : GGGGGTTAGGGGTTAGGTTTTACGTTAACTTTTCCACATAACATGAAAAGTCAGCTCTATAAAAGGCTACGCCAAGGGAAACAAGGGATTTTGAACAAAGTACGGTTTTGAACCTAACTTTTTCCTATAACAATAGGGTTTGGCTCAAGGTGAATTGTTTGTTTTTGTAACGAAAACTGTTGTTTTTTGGTGTGCTGTCAATTTTGAAAATAGCTTATTGATAAGCTTTTGGGAGTATGTTACGCAATGTAAAGTTGAATTGAAATTTATCGCTGCAAGTTATTACAAGATTTTAAGAGTAATTTGCAAAAATTAGCAGCTAATATAGGTTTTTAGTCTTGACTCCTTAGCATTTTTCCGTTAGATTGTCCATGTTGCTAATTTTTGAGAAAAAATTATCTGCAATTCAGTAATTATTTTTTTGATACATCGCCGTTTTCCGTACTCCGGCGCAACCGAACCTTGAAAACTAAATATATCAATAGTTTCCACAGGGTAGG # Right flank : CTTTGAAGGGTCGGACAAAGACGGGCGGTTTTCCATTTATTACCCTCCACGGGGACGGAACTCATTCAATAACTTGGTAAGCTGTTAAAGATGGAAATCGCATAGCCAGGGCGGGCAAGATGCCCACCCCACAAGACTTAGCAGCAATTTTCAGCAAGCCCTAATTCCCTATCCCATGCCCCATGCCCCATGCCCATCATCTATTCATCGGCCAAGATAATTGACAAATAGTACCATGTGGACAAAGGGGCGATCGCTCGAATTTTCCTTGTAGTTGTTTGGCTAGATTTATAAACTGTTGCGTTCCTCTTCCGGCTTTACTAGCGGTACATCCTAAACCATTATCAATGACGCTCAGGGTGTAGTAACCTTCAGATATTGTGCAAGTAACTTGTAGGCGGGTTGCACCTGTGGCGTGTTTACCAACGTTACATAAGGCTTCTTCTAAAAATCTGCAAATTCCTCGCTTGTGTTCAATAGTTAAAAATCTTTCGTCTATG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAAACACCACCCTTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //