Array 1 10778-6741 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPZ01000256.1 Serratia marcescens strain 1257 NODE_323_length_60195_cov_20.697765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10777 28 100.0 32 ............................ GACTCCGGTCGCCAGCTGTCCAACGAAGAAGC 10717 28 100.0 32 ............................ AACTAAGGATTAACGAAACATGGCTGAATTAT 10657 28 100.0 32 ............................ TGGCCGGTGTGGTGGAACTCGAGCGACGCCAA 10597 28 100.0 32 ............................ TTCTTGATCAGCTTCTCGGCCTTGGTTGGGCT 10537 28 100.0 32 ............................ TTCGCCGTTAACGGCTTTTGGTTCGAACAGAG 10477 28 100.0 32 ............................ GAGGAGAATGGTTTCGACCCTGACGATATTCC 10417 28 100.0 32 ............................ TGCCCGCTCAGCCGCCGGTGCTGCTTTCAGAT 10357 28 100.0 32 ............................ CGCAAACAGCCGCTAACGGCGGTCTGGTGCTG 10297 28 100.0 32 ............................ TCCAGGCTACGCCGCCCTTCCCATAAGCGGAT 10237 28 100.0 32 ............................ CGCCGACACCGGCAGTCATGGAAGCGGATGAA 10177 28 100.0 32 ............................ ACAAAACGCCGGTACGAAAAAGCGCACTGCTT 10117 28 100.0 32 ............................ TCTGACTATCTGTATGACGTGCTTGTCCCCGT 10057 28 100.0 32 ............................ AACGTGCAGATGCGGCCAAGAACTCATCATTT 9997 28 100.0 32 ............................ TGAAGCGCAAAAAAATGCTGGAGTTCATCGAC 9937 28 100.0 32 ............................ TGCAGAGTTGTGATATTGCCTTCTGCAGTGGT 9877 28 100.0 32 ............................ AGGTCAAATAACCCTCCACCCGGCCCCGCGCC 9817 28 100.0 32 ............................ AAGGCAGAATCCGAAGCGATAACCGTGAAGGC 9757 28 100.0 32 ............................ TTAGCCAGGTGATAGCCTGACCTCATCATAGC 9697 28 100.0 32 ............................ TCGAGATCGTCGCCGCCGTCATGGAGCAGGAT 9637 28 100.0 32 ............................ TCCAGCTCGAGACAAGGCTGACCACGTAGCTC 9577 28 100.0 32 ............................ CATAACCATTGATGAATGTTCCATCATCAACC 9517 28 100.0 32 ............................ TGCCAGTACGGTTTAGATATGAAGTTGGCAAT 9457 28 100.0 32 ............................ AGTATCATCTCACCCCTCCGGCTGACGAATAG 9397 28 100.0 33 ............................ AATCTGTCGGCATCCCCATGTTATTTCCATTAA 9336 28 100.0 32 ............................ AGTAAGATTTCCAAACGGCTTAACGCTGAAAC 9276 28 100.0 32 ............................ ATCGCCAGGGCGGTTTGGCGAGCCTCGGCAAA 9216 28 100.0 32 ............................ GTCCAGGCATTCGCTCCGCGTGCTGGGTGCCA 9156 28 100.0 32 ............................ AGCACTTCAGGCTTGCAGTTGACGCGCACTGA 9096 28 100.0 32 ............................ TGATGTGCTCTCAGGACGGACGCACACACAAG 9036 28 100.0 33 ............................ CCTACGGTTCCAGCACACTGGAGCAGCGGGCAG 8975 28 100.0 32 ............................ TCAAACACAACGGCATTTCCCGTTTGCTGGCA 8915 28 100.0 32 ............................ ATCCAAGAATATGGCGACCCCTCGCATAACAT 8855 28 100.0 19 ............................ GACCGCAAAGGCAATATGC Deletion [8809] 8808 28 82.1 32 .GC.G...T.A................. TCGAAAGCCGTCTGACCCGGCTGGAGGAAATT T [8799] 8747 28 100.0 32 ............................ AGCCAATCTTGTCGACCACCTGGCGGGCGTTG 8687 28 100.0 32 ............................ GGTTACATCGACGACTTTATCCCGAGTTACGA 8627 28 100.0 32 ............................ TTGTCGATTAGGACATTCATCGGCTTTTTGCA 8567 28 100.0 32 ............................ ACGCCGATTGCCGGGGAACTGATAGATGCGCT 8507 28 100.0 32 ............................ AGCTGACCTTCGCGTAACCGTCGGCATTCTCC 8447 28 100.0 32 ............................ TGAACCGCTTAACAAAAGGCGAGCTGGTGGAG 8387 28 100.0 32 ............................ TTATGCACATAAAAGGTCACTGCCTCCCCAGA 8327 28 100.0 32 ............................ TGCCTTAATTCGGAAGTATTCACCACCCAACG 8267 28 100.0 32 ............................ GAAAAACCGCAGGTGGTGCAGGAGCAGCAGAA 8207 28 100.0 32 ............................ CGTAGGGCGCGGTGGGTGTTAGTTGTCAACGC 8147 28 100.0 32 ............................ GGCAAACATTCATACTGAGGTGGCAATCCTTG 8087 28 100.0 32 ............................ AGCGTTGGCGCGGCGATGAAAAAGGATGTTCC 8027 28 100.0 32 ............................ TTAACTGCATCGTATCGGCGCTCGACGTCATG 7967 28 100.0 32 ............................ CTCGTACAGTTGGCGCGCTAACTCGACCTCAT 7907 28 100.0 32 ............................ GGAAGGTGCCGGGCGGATCTGCGCCATCGGTA 7847 28 100.0 32 ............................ CGCTCCACTCTTCGAGGCATGTCAGCAACCAG 7787 28 100.0 32 ............................ TACGAATCGAATGGACTGGATAGCGCGCCTAC 7727 28 100.0 32 ............................ AAAACCATCGCAGAGCAGTTTCATACCTCAAA 7667 28 100.0 32 ............................ CCTGCCAGTGCAATCCGATATTCACCAATGAA 7607 28 100.0 32 ............................ TGCGGATTGATGCGGTTGAGCTGCACCCGGTA 7547 28 100.0 32 ............................ AAAATCTACCGATTGCAGTACAAGCGGGGATA 7487 28 100.0 32 ............................ AACCAGCCCACGACGCTGAAATGTGGAATGTT 7427 28 100.0 32 ............................ ACAAAGGCGCATTATTCAGGTTGATGCTCATT 7367 28 100.0 32 ............................ AAACAACGCCGACGCCGTTATGATGGCTTATG 7307 28 100.0 32 ............................ AGCAATGGCTGCAGGGTAACGGGAAAACAGGG 7247 28 100.0 32 ............................ TGCAGGGGTCGCTAATGATTCGTGATCTGACC 7187 28 100.0 32 ............................ GGCACCTTTGACGGACGAGTTATCGCACTGGG 7127 28 96.4 32 ....................T....... TTGAAAACTTCCGCAATGGGCAGTTGCGGGCA 7067 28 100.0 32 ............................ AGCAGCTGCGTGCGGCCTTCACCTGCCAGGGT 7007 28 96.4 32 .............C.............. TGCGCCGCCTGGCGGAGAGCCTGCGCGCCGAC 6947 28 96.4 32 .............C.............. CACGTTTCCTAAATCGGCGCCTTGCTGGATGA 6887 28 96.4 32 .............C.............. TGACGGCTGTTTTCCGTGTAATCGGTATTGCG 6827 28 96.4 32 ..........................C. TTCGGCGGCCGGCCGCGAGCGTCTAGCCATCA 6767 27 82.1 0 .........T...C.A....T..-.... | ========== ====== ====== ====== ============================ ================================= ================== 68 28 99.2 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGCTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCTGTGCCTGCTGAGACGGCGTTTCGTACCGTCAGCAGAGTTCAGGTAAAGAGTAGCGTTGAGCGTATACGCCGCCGAGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGAACCTTATTGCCTTTTATTGCCTTGAAGAGTCTCTCCACCGGGCAACACTTCCGCTTGTTCCTGAAACAGGGTCAATTACAGGAAAGGCCAACGCCGGGCGTTTTTAGTTTTTATGGGTTGAGTGCCTCCGCTACGGTACCTTGGTTTTAACCCTCTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGCCTCTGAACGGTATATGAAAAATTAGGGTTAAACCGAGGGATTTGACTGTTGTTCTTTAATAATCAGTTTGTTAGAGACTATTTTGCTCA # Right flank : TAGAAGGGATAAAACTTTACCGACACCTGTTAACCAGGAAGCAAATACTCCAACGACAGCGGCGGGTGACTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGCTTGACGCGGTATTCCAGCTTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAACGCCAACGTCAATTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTGCCGGCCTGATGCTGCGCCAGGCGGCGCGCCACGTCGGTGGTGATGCCGGTATACAGCATGCCGCTCGGTAAACGCAGCATGTAGAGGTGCCAGAGAGTGGGGAAAGTGTCGGTCATCGTACGCCGTTTCGGTGGCCAGGGTCGGCGTATGATGGCATGTTCGCCATCACAATCCCATCCCCGGCCGCCGGTGCCCTACCGCTTTACCCCTTTTTACCCGCCAGCTCGAAGCGCGGCGAGACGATGCCGTACAGCGTCCAGCCGAGGAAGGTGGCGATGGCGCCCCACATCATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 22001-19627 **** Predicted by CRISPRDetect 2.4 *** >NZ_QJPZ01000256.1 Serratia marcescens strain 1257 NODE_323_length_60195_cov_20.697765, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 22000 28 100.0 32 ............................ GAAATTGCTTGTTGACAGCCCTGTTACTTAGG 21940 28 100.0 32 ............................ AACATTGACCCGAAACTAGAGCCGCCATAGCC 21880 28 100.0 32 ............................ AGAATAGCGCCTTTGGATCGCCCGCCGAATCC 21820 28 100.0 32 ............................ GGTGCCAGACGATGACCATTCGAATGCGCAGC 21760 28 100.0 32 ............................ ATCGAAACGGCCTTTATCATGCGGCGCATGAT 21700 28 100.0 32 ............................ TTAGCCCTAACGCCTTCGCTTCCTTGCTCCTG 21640 28 100.0 32 ............................ AACTTCACGCATCCATGAGCGGATCGTCTGGG 21580 28 100.0 32 ............................ AGAAGTCGTTCACGTCCTGCTTGTCGAAACCT 21520 28 100.0 32 ............................ GCTCAGGTGGGCATACTTATTGACCATCTCGA 21460 28 100.0 32 ............................ CCATATGGTTGGTAGCTGTTCGACCCTTCAGC 21400 28 100.0 33 ............................ CGTCGAGTACTGGCATCACTGGGCGCTCTTTCA 21339 28 100.0 32 ............................ GCAAACGCATATTCGACCTCACGGTAAATATC 21279 28 100.0 32 ............................ TTCCTCCAGTTTCGGCTTATAACTTTCCGCCA 21219 28 100.0 32 ............................ CACAGAAGAAACCAGAAAGTCACCGGTAAAGG 21159 28 100.0 32 ............................ TGTGGGACGCGGGGCAGCGCATCAACGATCGC 21099 28 100.0 32 ............................ GTCAACAAAGAGCGCATGAAATCCCTGGGCGT 21039 28 100.0 32 ............................ AAAAGGCACGAGTCAGCAGCCAGCTCCCAGAC 20979 28 100.0 32 ............................ GTTAAGCAGGCGAATATCTTCCATCATACGAA 20919 28 100.0 32 ............................ TCCCCAAGTAATGCTGAGGACAGTGTTTGCGT 20859 28 100.0 32 ............................ ATCGTGTCGCCTTGCATAAACAGCGAAATGTC 20799 28 100.0 33 ............................ TGGTGGAATACCTTGCCTTCCGCCGTCCAATAA 20738 28 100.0 32 ............................ ATTCGACGAGAACGAGCCGCCGCTGTGCTCAA 20678 28 100.0 32 ............................ AGCAGTTATCAGCCAGGTGACACAGTGACCTG 20618 28 100.0 32 ............................ ATCTACTCATCTCCCTCTACGGTGAAGAGGAC 20558 28 100.0 32 ............................ TGCCCCGGTGTCTGCAAACCTTTTACAAATGT 20498 28 100.0 32 ............................ AGCCGTCATCATCCCAGATTTGATAGATTTGC 20438 28 100.0 32 ............................ TTCTATGACAAGACTAACCCTAGACACGGCTC 20378 28 100.0 32 ............................ GTCGACTGGCCGCGGTTCACAGTGACGCGAAT 20318 28 100.0 32 ............................ TTCATGCAGGAAGACTCGAACAGGAGCAGGCA 20258 28 100.0 32 ............................ CTCAACTTCTCAGCGGCACGCGTCGCGTACAT 20198 28 100.0 32 ............................ TTGTACAAGCTGACGTGGAAGCAATGGGTTAC 20138 28 100.0 33 ............................ CATAATGCGCTCAATCTCAAACCACTCGATATT 20077 28 100.0 32 ............................ GGCAGTTCGAAACAGAGCGCCAGTAATTCAAC 20017 28 100.0 32 ............................ TGCGCCTGGATAGCTGCAAGTGCTGCGTCAGT 19957 28 100.0 32 ............................ TGCCTCATCCAGTTTGCAGTACAATTCTAACT 19897 28 96.4 32 .............G.............. AATCCGATGACGTTTCCCGCATCTACGCCCAT 19837 28 100.0 32 ............................ TGATCCAATCCCGCCCGCGCCACCGGCATACT 19777 28 100.0 32 ............................ ATCAGCACGTCGGCCGCGTTCGGGTCGGCGTT 19717 28 100.0 32 ............................ ATGGGAATGATGCCAAAATTTGCCAGTCCGGC 19657 28 96.4 0 ....................A....... | G,A,A [19630,19634,19636] ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.8 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATCCTGTTTACTACGGCCGCTTCGGTTTTAAACCGGCCGCCGCCTATGGCCTGCATTGTCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTCTACCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGTTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGGCTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGCTGGCAATTCAGATCACCTGTGGGGTCTATGCGTCTGAGTGGGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCTAAAATGCAAAGATGTCACCTTACCCCGTTCTTGTTTGCCGAACCCTTTTTTGAGTGCCACTTTTAATTGATTGATTTAAAGTCATATTTTTAAACTCTTTGAAAAAGGCTTTTTGAACGGAGATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAATATGCAACG # Right flank : AAGTAATATGTATTTGATACATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTTTCTGATTGATGAATATTGACTCGGTTGCAACGGATTTCCCTGGAAAAACGTGGTAGAACGGTGGTGTCGTCGGCATTGACATTCATCGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATACCCTTTCCCCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGAAAGCAGTCTCTTTACTGGAACATCCCTATTGCCAACACTACCGCCATCATGTTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAGTTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGCGGTGGGACACCCCTATTTGCTGCTAACGAAGTGGAAGTCGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //