Array 1 1155610-1156922 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDLQ010000001.1 Escherichia coli strain N679 CH11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1155610 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 1155671 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 1155732 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 1155793 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 1155854 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 1155915 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 1155976 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 1156037 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 1156098 29 100.0 32 ............................. TCCTTAATTACAACGACACCACTGGAAAAATT 1156159 29 100.0 32 ............................. TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA 1156220 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 1156282 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 1156343 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 1156405 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 1156466 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 1156527 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 1156588 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 1156649 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 1156710 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 1156771 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 1156832 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 1156894 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTCAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1183246-1184128 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDLQ010000001.1 Escherichia coli strain N679 CH11_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1183246 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 1183307 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 1183368 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 1183429 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 1183490 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 1183551 29 100.0 32 ............................. TCATGAAGGCTTCGATTATTTCTTGATACCTG 1183612 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 1183673 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 1183734 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 1183795 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 1183856 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 1183917 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 1183978 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 1184040 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 1184101 28 72.4 0 ..A........C..T..-..T.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3253050-3252902 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDLQ010000001.1 Escherichia coli strain N679 CH11_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3253049 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 3252989 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 3252929 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAAAGGTAAGGATAAAAAAGGGTGACAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGACTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //