Array 1 1435-1731 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000032.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_32_length_39772_cov_249.582290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1435 32 100.0 34 ................................ CGTAAACAAACTCTTTCTTGATCGGTATGCAAAC 1501 32 100.0 36 ................................ CCGTAGCGAAGTGGGTTATATGTCAGATTTGCCGTA 1569 32 96.9 33 ..........T..................... TGGTGTAAGGGTTAACTCTCCGCCCTCGTTTTG 1634 32 93.8 34 ..........T.A................... TTCAGGGTCTTTAAGGCGTATTTTCACTTTATTC 1700 32 71.9 0 ..........T............CTCGTTCG. | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 92.5 34 GTCGCACTCTAAGTGAGTGCGTGGATTGAAAT # Left flank : GTCAAACGATAAACGGAACGGTTCAGGAAACATATTTGCTTCTCAATCGTAGCAACTAAGAAGACATAAAAGCGCTTTACATAAGCTCGGCAAGAATGGCCCTGGAAGAAGTAGAAACGGTTTTCAGGCACTCGCCTAGACAGCGTCTTAACAGCAAGGATCAGGCCCATTTCATACACATATCAAACAAGAATGGCGAAACAGATACACAACTCATAGGGGAGAAGGGATGTTAGTAGGCAACCGACTCCCCTCAATCGTTTCTTTGTGAGCAAGCGAAAAGTTCTGTATGATTGAAGAAGATCAAAAAACACTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTAAGCTTAAATATATAATATGTGTAATGATGGTAAAATGCTATACGTATGCCATGATAGAATAAAAGAAAAGAGCGGCTTTTTCCTATAATTGATTGTTTTCCAGCCAATAATTAGGGGGATTTCGCT # Right flank : TATGCAACCTAATAACCAGTAGGTTATCGACGTAAGGCATTTGGGAGGCGGATCTGCCATAAAACGAAAAACAGTAGTTTTAGGTATAAGTGGGTTTCTAGTAATTGGTATGGCTGTAAGTGCAGTCATCTTATTGAATGCGGACAAGGAATATGTGCCAGGGGGAACTCAATTAAAAAAGAATGAAAGAGACTCGATTGATTATTGGACCAAAGACAACATGAAAAAAGCTGTTCCAGGGGCAGGAATGGACGAATAAGCCTGCTCCTCGAACAGCTTTTGCTAACTAGTTGGTGTTTGGTTTCGTTCGTTATTTTTTTCTGAACTGGTGTTTAAAGCGGTTAAACGGGGTGAAGTATGAAACTGCGTAGTCTAAGTTAATGAGCTCGCTGTATTCAAAGACGCGCCCGTCGTTAAGAATGCCGCGATTGACAATTTTCATGGCTGCGATGTCTTTTTTGCAATTTAACAAATTGGCTTGTTCTCTTGTCACGTTGACG # Questionable array : NO Score: 8.60 # Score Detail : 1:0, 2:3, 3:3, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTAAGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5867-5169 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000036.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_36_length_32570_cov_248.469793, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 5866 32 100.0 37 ................................ ACAAACAAGCGTCGCTTGAAAGACAGAATGTCGTTGC 5797 32 100.0 35 ................................ ACTTCCAGACGTAACTTGATTAAATGGGTATCATG 5730 32 100.0 35 ................................ CAATATACGCTCGGAAATCCTTTTTAAGCTTAACG 5663 32 100.0 35 ................................ CAGAAAGTCAAAAATTACGAAAACCGAACACCCTA 5596 32 100.0 34 ................................ TAAAGAGCAATAGCAATACATCAGATAACGCTGC 5530 32 100.0 35 ................................ GATCCTTTACGAAGCCGACCACGCGGAGCAAGTCG 5463 32 100.0 33 ................................ GTAAGTCTTGCCTGTCTCACGCGCCAGCTCCAT 5398 32 100.0 34 ................................ GCTCACTCCTCCGTGTCTCCATTTCGGTCGCTAC 5332 31 96.9 35 ..............-................. TGCTGCAAAATCGTTCTATCACCTGATGCCTGATT 5266 32 100.0 34 ................................ CAGTAAGGAGGAGTAGTGTCATGAAACATGATTT 5200 32 75.0 0 ..........TCA...C...A.......C.CC | ========== ====== ====== ====== ================================ ===================================== ================== 11 32 97.4 35 GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Left flank : GAAATGGCAAAATCAAAAATCCGCATGGTTGGCAGTGAAAACACGGTAGTGCCAGCATTTGCGTGAAAAGCGTAAGCCCGGAGTCCTTCACCTTCGCTTGTTAGGCTATGTACTAACAAGCGGAGGTGTTTCTTTCATTAATTGGGAAGGGGGAGAAGAACTCAATCGAATAGGTGTATAAGCAAGGAACTTTCCTTACGCCAACAGGAGTTTTCTTATCAAATATAGTAAAATAGACAGTAGTAGAGACAGACACAATTGACGAGGGAGATTAACATTTACAATTATTCATTTTAGTATTTTGAACCTGTGATTCTTTAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTTGAATGTGGGTTAATGTGTGAAAAAGTGTTAAAATGTTGTTCGTGTCCCATGGTATTATATAGGAGAAGAGCGGCTTTTTCCTATTATTGATTGTTTGGCTGCCAACAATTAGGGGAATTTCGCT # Right flank : CTCGTCACTGCTTCTAAAGGAAATGCACAGTTGTAGCGGTGTTGGAAAAATAAGTTCTTTGTCGTGATGATAGAACAGCAGCTCATAGCTTTGGCAGTTAGTAAAACATGTCTATCTTCACAGTGATTCCAAATATTCACCATTTGTCTGGATCGGTGAATGCCGAAAATCTATTTAAGTTGTTGGAGGGAGTAGTCAGCATGTTAACAAGGGAAGATATCTTTAAGCACGTCAAAGAAAAATTCCGTACATCGCCTGATTATCCATTTCAAAAATTTCCAACCTATGCTGCTTTGAGACATAAAGCGAATGGAAAATGGTATGGCCTTGTTATGAATGTTCATCCAGAAAAATTAGGGTTGGATGGAAATGACGAAATAGATATTCTGAATTTAAAATGTCAACCTGAAGTAAGTGGCAGTTTGAGAAATGGAAAGAGTATTTTACCTGGATACCATATGGATAAGGAAAATTGGATATCAATTGTTTTGGAACGTGTA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14054-13153 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000036.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_36_length_32570_cov_248.469793, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 14053 32 100.0 34 ................................ TAGCTCGATGATTACATTTAGGTCGGGTATCTTT 13987 32 100.0 34 ................................ ATATATTTGTTTGTTTCCATGCCGTTGTATTCCG 13921 32 100.0 33 ................................ CCGTCGCTCCGCTCGCTCTTATAAGCCTGCCCC 13856 32 100.0 36 ................................ GCTCCTCTTTGTTATTTGTTATTTATACTGTAACAT 13788 32 100.0 35 ................................ ATTGGTCCTTGTTAGAGGAGCTAAACAAGAGATTT 13721 32 100.0 37 ................................ CAAAAATAAAACCCCAATCACACAAAAGGAGCCAATC 13652 32 100.0 36 ................................ AAAGGCTTCGTGCGTGGCGTTAGGTATCAGCCCAGC 13584 32 100.0 34 ................................ TCCTTTTTTATGTTTTTTAGTTGGATAAAGAGGA 13518 32 100.0 36 ................................ CTCTACGATATACACCCGACCATTCGGCACAGCGTC 13450 32 100.0 34 ................................ TTCTCCAGCGCTTTTTGGAGCTTGCGGTCAGATT 13384 32 100.0 34 ................................ ATTGTCCCAAACAGCACGTCGTACAAACGCCTTT 13318 32 100.0 35 ................................ GTCCAATTCGCGCAGTAGACGGTTAATGCGCTGCC 13251 32 100.0 35 ................................ GTGGTATCAAGTTCGACGTAGAATCAGCGAATAAG 13184 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : GAAGAGGAAGGGGAGGCCCCGTTGGCGGTATATCTTGCTTCTTTTAAGCGAACGAATTTGGAGAATCTACTAAACGAGCTGGAAAAGGCGGCGAACTTGCCCGCGTATCGAACCAATCTGTTTGAACATTAATGGTGTGGGGACCCATGAAGGAGGCATTCCTGTGATCGAAGCATGGACAAAAAACACTACGAGACGATCCCCTCTAATCGTGGCTTTCGGTCATCTACCAGCTAAAAAAATGGTTCGTTAAAAAAATGTTGAGATAACTCATGGGTTGTTTTTCAGTTTTAACTTCCATCCCAAACACCTACCATTTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTACTCAAATATGGTTGAATGTGTGAAAGAGTGTTAAAATGTTGTTCGTATCCCATGGTATGATATAGGAAAAGAGCGGTTTTTCTCTAGGATTCATCCATTGGTTTCCAAAAATAGGGGGATTTCGCT # Right flank : ACAAGTTTTTATCCGATTTTATTTTGGAATCGATGTCGCACTCCTTACGAGTGGCTTGTCTAAATAGGGTCGAGAGCAGGCCCTACCGCGCTGTTACCCCAGCCTGCTCGCGGAAAATCCCTATTTATGCAATCTTGCAATTTCCATGCCTGGCGAAATGGAGCGACCGTTTTTATTGCTGTGATTCGTCTTAATAGAAAAAAGGACTAGCTACAGGAGGGATTGAAATTGGAAATTCGTACAGTGAAGGGCTCTGACTACTATGTCATTTCCCCACTAATTAATAAGTGGTGGGGTGGAAGAAAGATGTCGGATAAGTTACCGAAATTATTTTTCGACCATTTTTCTAATACAAGTTTTGTTGCTGAAAGGGATGGAACACCTGTTGGCTTTCTAATCGGATTCTTTTCTCAATCTCATCAAAAAGTAGCCTATATACATTTCGTTGGTGTCCACCCTGATTATAGAAAGCAAAGCGTTGGCAACCTATTATACAATTG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 20732-20497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000036.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_36_length_32570_cov_248.469793, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 20731 32 96.9 35 ..........T..................... GAGGATTTATTCGGCAATGAATCGCCTATGATGTA 20664 32 100.0 37 ................................ CAAGCGATGCGGGAGCTGGACGCCGAGGACAGCCTGA 20595 32 100.0 35 ................................ CTCATCGCTGTTTGCGCAATTTGACGCAAATAGTT 20528 32 90.6 0 ..........TT..............G..... | ========== ====== ====== ====== ================================ ===================================== ================== 4 32 96.9 36 GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Left flank : GAAAAGTGCCTCCCACGAGAAATTGATGTGACGCACTTGCAAGACACGCTGGTGAACCAAGGGGCGATATTGAGCTGATGAGGGGAGGGGTATTTTCGAATAAAAGGATTTAGCATTGGTGTTTGAAGAGGGACTACCTTTAAAAATGAGACGAACAAGAACTCCAAACATTGGGTTTTGGAGTTTCTTTTTTGGTGTTCGTGGTATTAAAATGTGGTGGGATTAGAAGGATAGGTGGGAGCAACGGTTTAATTTGGTCAACCTAAAGAAGTTTGCCATTGAACATTAACGCCGTCGAAGACAAAAGCTTAAATCAGACGGTGCGAACCCCAAGCGCACATAAAATCACTAGATCACCCGCACCGAAAAAGAGTCTGAATATGAGTAAATGAGTATGAAAATGTGAAAATGTGGTTTATGTTCCTTGATATAATGAAGGGAAAGTGCGACTTTCCTATTTTATTTGTGGTTTTATTTCCAGCAAATAGGGGACTTTCGCT # Right flank : GTGTTTTAAGATCCTTGTACGGTGTGGCTGCGTTTCGCCCTTCTTGTAAGTGCGCCAATTAACATCCACATGAATCGACGTTCGCTTGCGATAACAACTAATAAAGGTACAGAAAACCAAATAAGCAATATGAGCGCACCTACGCCCATATTGCTTATTTTCGTCTTTGTTGCCTATTTTAACGCTGGCCAAAATGCTTTATTCGCCTCGATTAAGTCGTCTAGTATATCTTTTGCTACTTTTGCACTTGGCACGGTTTTTGATAATGTGATGGCTTGCCATAGTTTTTGGTAGGAACCTTCTTCAAACGCTTCTACTACTAATTTTTCGACGCCAACTTGTTGCTCCATGAGGCTCTTTTGGAATCTAGGGATTTCTCCGACAACTAGTTTTTCTGGGCCGTTGCTGCCGACGATGCACGGGATTTCTACCATTGCTGTTGGGTCAAAGTTCGTGATGGCGCCATTGTTTTCGACAATCATTAACATCCGTTCTTTTGT # Questionable array : NO Score: 8.71 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 31460-30423 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000036.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_36_length_32570_cov_248.469793, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 31459 32 100.0 34 ................................ ATCACTCTTTAGGATTTCCATTACTTTATGAGTC 31393 32 100.0 35 ................................ CTCACCAAACATGTGCTTCGCTGTCCGGTCAGAGA 31326 32 100.0 34 ................................ GGCGCTATACTAGTCCATTCTTTACCGTCTACAA 31260 32 100.0 34 ................................ TATGTCCTCGATCATACATCCTTTTGATACAAAG 31194 32 100.0 34 ................................ TAGGAAGCACTCTTACAAATTGGAAGGTGCAATC 31128 32 100.0 34 ................................ TCGTCATTCCTCAATCCGTGACCATAGTGGTTCG 31062 32 100.0 38 ................................ GACTCACCCTCTTCAACGTGCTTTAATAATGCTTCCGT 30992 32 100.0 34 ................................ TCCGAACGCGTTTGAGATAACCTTTATCACTAAG 30926 32 100.0 38 ................................ GTATACGTGATCGATTTAGTGCTTACGGTGATGACCAG 30856 32 100.0 35 ................................ AATTCTTTCACATAATTGTTAGCCCCCATAGTGCT 30789 32 100.0 34 ................................ ATTGATTTCATTTGTGTAGATTGCGCCGGAAACG 30723 32 100.0 35 ................................ TTCGATTTTTCATTTCCTATCACGGCACGTCCACT 30656 32 100.0 35 ................................ TTTCATAGTCTAGGTTTCGGACGACTGTAAAAATA 30589 32 100.0 33 ................................ CCCTGTGTCCATTCCTGATGACTGATTGACTGA 30524 32 100.0 35 ................................ ACAATCGTATGTCCGAGACTACCAAAACAAAATTG 30457 32 90.6 0 .......................C..C..T.. | C,AC [30425,30432] ========== ====== ====== ====== ================================ ====================================== ================== 16 32 99.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGATAATAAAACGGCTAAAATTGAGAGTTGAAGATTAAATCCCAAATTGCAGAAATATTTGTGGGGTAGATCCCTTTTATTTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGTTTGAATATGAGATAATATGTATTAAAGTGTTAAAATGTTGTACGCGTTCCGTGTTATGATTAAGGAAAGAAGCGACTTTCCCTAATATTTATTGTTTTATTCCCAATAAGTAGGGGAATTTCGCT # Right flank : TTGTAGAAAAAGTCACCCTCGTTGGGTATGCGTAGATTAAAGTCCCAAAAGACATCTCCTTCCATTTCACCTTTGAAGTTGCATTTCGAGAAAGTCGTCATACTTATTGCTTTGAGCGGATGGTTTCAACATCCACTCTTTTGCGTGAATCCTTTTTTAACTCAAGGGACTTCTTTGACAAGCGTCTTCTTAGAAAGTCATAGCGATATGAACCCAGGCAATTACAAATGATTACCAACGAGAAAACGATTATGATGCATGTTCTAGTTTCTGAAGAGGTGCCTTCCTAAAAAGTGATGCAACTACCGATCAGTTCAATCAATCTAAAAAACCCCTTAAAAAAACACCACCAGATCTTAATGCAACAGGAATATCTACAGCTTTGCTTGACGCTATAATGAGTAGACATATGAGAGGAGGAGTTAAATGAAATCTCCATTGAAAGCGCTTACTGTTTCGGTGATTTTATTGTTGGCTGGTCTGGTTTTGGGCGATGATCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 32452-32219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000036.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_36_length_32570_cov_248.469793, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 32451 32 100.0 33 ................................ CTTGGTGTTACCAATTCCTGTTGCTTTATAAGG 32386 32 100.0 36 ................................ ATGAACCTCACAATATCTTTCACGCGTTAGCTTCCC 32318 32 100.0 36 ................................ CATGTAGCTTTTATTGACTGGTATTACTTCGATCAC 32250 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 100.0 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CACTCGACTATCAATCACCCGTCGATTACAAAGCCTTACACCTTTAAAAATTTGTCCAGTTTTGTGTTGACATTCCACTGAAATTTATGACCGGTATCAGCTGAAGCTTGGGAAAAAG # Right flank : TTTAAGCACTCCATCGTAGCAGCAGCTTGTACCTGTCGCACTCTTTATGACTTCGTGGAAAAACAGAAAATATCGGTTATGTACTAAGTAAATACAGAGGACGTGAAATTTTATATGACTTGGCATAACCAAGATCCTTTAAACCTGAGTAAGGAAGAGTGGATAAATCTCTTGCAGGATGAAAAAGTTTTCAACAAGATCGGCTTAGAGATAGTTTTCTTTGTATATAAGCAACCTAATTATCAATCAAATGCAACGGAAATCGGTGAAGCTTTAGGCGGAGTGTCGCAGCAACAGGTGACCGCCTGGAATCGTAGTATTGCCAAAAAGATCTATCAAAAGCTTCAAAAAGAACCGCCATTTAATAGTAGGGGTGGCAAACGTTACTGGAATGTACTATTTGATGGAGCTGTCGAGAGGGAGCTTGATGATAAAGGGAATTTTATCTGGAAATTAAGGCCTTCTCTTGTCTCTGCTTTAAAAAGATTGGGAACTTCTGA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 117714-118412 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000006.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_6_length_226074_cov_251.159896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================================================= ================== 117714 32 100.0 33 ................................ TTTTTATCTTGTGGCGAGTTTTTGGCGAGTTGG 117779 32 100.0 35 ................................ TATGGCGGGGCACTCGCCGCTGCCTATTGACGAGG 117846 32 100.0 34 ................................ GATGCTGATGAAGTCGCGCCTAGCCACCGTACAC 117912 32 100.0 35 ................................ AATAGGCGGTTCCAAAGTTATAAAACCGACAAAAA 117979 32 100.0 36 ................................ CATCTTCTGAACAACCGTAATTAACGGAACCTCTAC 118047 32 100.0 33 ................................ CCAGCCTTGTTCGACCTCTACCTTTCCCTTTGT 118112 32 96.9 35 ...........A.................... TACCACTGCTTTTACGAAGTACTCGTTTAGCTCCT 118179 32 96.9 34 ..........A..................... CAGATGTCCATGTTGATTTGACCTGTCTGTAAAG 118245 31 78.1 105 ..........A..C......-.TC......TC TCTTTGACAGATGCTACCGATTCCGCGTCTAAAGGTCACACGTTGTGTAAGTAATAGAGTCAAATAAAAGTTTCTCTGGCCCACACTCTTTTTCATTGCAAAAAC 118381 31 78.1 0 ............T........AC..-...TCA | A [118391] ========== ====== ====== ====== ================================ ========================================================================================================= ================== 10 32 95.0 42 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : ACAACTTGAATTAGAAACATCGGCGATTCCGATCATAGTAAAAGGGAGTTTATTAGAGAAAAACGAATTTGTGCGCCACCATTTTGCCGAAAAGCTAAAACAATGTTCAACGGGCATTTCGATTGTTTGTAAAAACCGACCAACCGTAACAGGCGCTTTGCATGCATGGAAGAATTCAAACCATGATTAAATAGGACCAACTTTTGTGCCCGGGCCGCTTCTTTATAGGTTAACCGTTTCAAGAGACAATGTTTATGATTGGACCCCAAGGGAAGCGATCACCTCCTTTCAAGGAGAAACGAGGACAACGAACATTCAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAATGGCCTTAAATATGTGTTAATATGTACAAAAATGTAATAATGTGATCTTGTTCACTGTGCTATGATAGGAAATAGAGGCAAAATCAAACGTTTTCGGTTGTTTATTTTCCGGAAAATGGGTAAATGTCGCT # Right flank : ACTTCCACCTCTTGTTTGATTCCTTTCCTAACAGACCTATTTTCTTCTTGTAAAAGGTCTTTCCGATAAATGCTAGTCGGTTTGTTGTTGAAGGGTTTGCAACTTCAATTCGTGTAAGGAGAGTGTAAAATAGCGTAGCCATTAAAACGAATGTGCTTTCTGGCGCAATTGGGTTGTAACGAATTGGACAAACGCTTTGACGACAGAAAGGTCGAGTGCGGAATTGGAATAGATTAACCACGTTTTTCTTAATAGTGGGTGGTTATCAATGGCAAGGATGCGGTTGTATAATTGGTCGTGCGGCCGAAGGGAAATTTGAGGGATGATTGCGTATCCTAAGCCATTGCGTACCATTTCTTTGCAAGTCTCGATACGGTCGACTTCCATCGTTACCATTGGTGGCTGGCTAAAATGATGGTTCCACCAGTCTTTGATCATATTATCAAAGATTGGATCGGTTTTATAGGATATCCTTCCAATAGAAGGTAGATCACCCATAT # Questionable array : NO Score: 8.30 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:-0.70, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 132123-132754 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000006.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_6_length_226074_cov_251.159896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 132123 32 100.0 35 ................................ AACACAGCTTATGATAATCTGATTACCTCCATTAA 132190 32 100.0 34 ................................ TATCCGAATACTCTGTAGCGACGACATCATCCTC 132256 32 100.0 33 ................................ AGACTCGGGGTCAGGCGTAAACGTAACGTGGAA 132321 32 100.0 36 ................................ AAAAACTAGCCCTAGTATCCAAATAGGTAGAAAATG 132389 32 100.0 34 ................................ TAATCTTTATGCTGATAACTAGGTTAACCAAAAA 132455 32 100.0 36 ................................ TTTTTGAGGGGGCGATCTTTTGAAGGTGTGTGGGAC 132523 32 100.0 34 ................................ ATGTGCGTGCCTCCTTTTCGCTTGATTTTGCCGT 132589 32 96.9 35 ..........A..................... GGTTATTTTGCATAGGTCGCCTCCACTGAGATTTT 132656 32 96.9 35 ...............G................ AACGATATAGCGAACATGCTGCAAATCATCTATGT 132723 32 81.2 0 ..........A...........C.CA.A..C. | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 97.5 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : AAACAAATATATAGGAACAACATCAGATTCAGTACAAGAAGAAACGATTCTCTTATCTCCTCAGGCGATTGAGCATATGCCGTCATAAAAAATACCTCCTTTCGAGCTATATAATCAATGTTTAGGATGCCTCTCATTAAAAAAGCAAGCGTTACCAACATCCTAACACATGGACAAATCGTGTGTCTCTTATTGGAAAAACGGCGGTGGTGTTAGTTAGAACCCTTAGTATTACAGAATAGCAATACGGTGGAACGATCCTTAAAGGCAAATGATTCTTGATTTCTTCAATAAGCACTCGCTGAAGCTCACTTTTCTCTAGTGCGAATCCTAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAACTGCCTCGAATATGGGTTACTATGTACAAAAATGTAATAATGTGACCTTGTTGGGTGTGCTATGATAAGAATTAGAAGGGGAACCATTCGTTTTCGGTTGTATATTTCCGGAAAATGGGTGAAATTCGCT # Right flank : TAAGACAAGCCCCACCGCTTGCTGCAACAAGTCTTTCCCTGCTCAATTCGAGTGCAAAATACGTTTCTCTTACTAGACCAACAAGTGCATCACACCTATAAATACACGTATTAAAACACAAAACTAGAAAGTAAATTCCAATTAAGGGAGGAGTAAACAATGGAAGAGAAAGAAATGTTAGAGCTCTTGTTACAGAAGGTAACTGACCTGGAATTGGGGTTGAAAGAGCAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGCATAATGCTGTAGTTGCAAAAGATTTAAAAGAACAAAAAGCGTATAATGCTGCGGTCGCAAAAGATTTAAAAGAGCAAAAAGCCCATAATGCAGCCTTCGCAAAAGACTTAAAAGAACAAAAAAATTATACTGCCGGAATCACAGAGGAACTAAAAGACCAAAAAGAGCACTACCTGGCCATGGTACAAGATATCAAGGAATTAAAAGAAGATCAGCTCAT # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 201607-202438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000006.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_6_length_226074_cov_251.159896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 201607 32 100.0 34 ................................ AGTGCGCCCATTTTTTTAAGTAAATGAGCATTAG 201673 32 100.0 36 ................................ AACGCGCTCCCTGTAGACGTGTAAGTATCGCTCGTC 201741 32 100.0 36 ................................ GCTTTGCAAATGGATAGCAGACAAGTGGGGTATATG 201809 32 100.0 37 ................................ CAACTCGGCATAACAACTTTCAGGTCCTCCATTGTTT 201878 32 100.0 34 ................................ CCTGTTACCTCTTTAGAGAGCTTGTTAAAGCTAT 201944 32 100.0 33 ................................ TTTTTTTCTTTGATTTATATAATCCTCAATCAT 202009 32 100.0 35 ................................ TTGTGGTGTCATACGTGCATAAGCGTCACGATCAA 202076 32 100.0 33 ................................ AAGAAATTTAAATCCTCCACTTGGTTGAATAAA 202141 32 100.0 35 ................................ GTTAAGGCTCATAATAGTAAATCCTCCAATATAAT 202208 32 100.0 33 ................................ AATAAACTGCAAGATCACGTTATTGCAGATTAC 202273 32 100.0 36 ................................ CGCAATATGAAGCCTTTAACCGCGGCGAATTATCGG 202341 32 100.0 34 ................................ TCAATATCTCGTACAAAGTTTGATACCTCCGCCA 202407 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 13 32 100.0 35 GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Left flank : TCCCAATCATCGCGATTCAAATACTGACGATCATCGCCGCCAAAAAAATGATGGACGAAGACAAAGCATGGATTAATAACGTTAGAAAAGAGAAATAGGAAAGGGCGATTTGTAGAAGTTAGCTGAGCCTGCCGATATAAGTAGCCGGCAGGCTTTGTATTTTGGAGGAAATCACGTATTTTGAGTGGCGGTGGGGCCAGTGTTTGTGGAATTGGCGATTGCTTGCAAAAAGACATTAGATTTTAATCTATGATAATTAAAATGGAGGACGTGATATAATTTGTATAGTCTCACTCGTAGAGCAATTGGCTGAGTTTAAAGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGTGCTCAAATATGAGGAAATATGTGTAAAAGTGGTGAAATGTTGTTGGTTTCCCATGATATGATAAAGGAGAAGAGCGGCTTTTCTCTATTATTTGTGGTTTAAATTCCAAAAAATAGGGAGATTTGGCT # Right flank : TGTATTTTCAATTCGATACAAAAAAAGCCTCGGCACAAAAATGCCGGGGCTACAGTTTTTAGAATGGTATGTTACTTTTGCCTGTTGATTTAAAGGTACATTAATTTCGCCTGCAGTTGAATCAAAATTTGGTGGGGTAAATTGGCAACGATGGCTGGCAGTTCATTCTACCAAGGTCCATTTCTGAAAGATAGTCTGTGTTAACAACAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCCGCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTATGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCATTTCACAACCACAAAAAATAATCCACCCTTGAGTTAGTGGCTCAGGTGGATTATTCGTCCAATCGGCCGATCCCCTTGCAGGGAACCGAGCTATTGTTTGACTGAAGGTGTTACAGCGCCTTCAGTCTTTTTTACTTTAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 214087-214649 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000006.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_6_length_226074_cov_251.159896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 214087 32 100.0 33 ................................ TACATCAATGAAGCACCAGTCGGGTTAGTTGCC 214152 32 100.0 36 ................................ GTCAATCCGGCCCCACCCCTCAATATGAGTGATGAT 214220 32 100.0 34 ................................ GGATTATCTACGCGGACGGCTCCTCGTTAGATTT 214286 32 100.0 37 ................................ AACCACAAATTCCCCTCTGCGAGAGAAGCCTTAAAAA 214355 32 100.0 33 ................................ AATTTGAAAAACACCCGAATGATTATTCATGTA 214420 32 100.0 35 ................................ GATTTCCTGGTTATACATGACCAAGGCGCTCCTGC 214487 32 100.0 34 ................................ GATAAGCGATTTCCGCGTTTCGCATCGCCCTTGC 214553 32 100.0 34 ................................ GTCCCTCAGAAAGAATTTGAGTTTATGGGCCGTA 214619 31 96.9 0 .........................-...... | ========== ====== ====== ====== ================================ ===================================== ================== 9 32 99.7 35 ATCGTACTCCTTGTGAGTGCGTGGATTGAAAT # Left flank : TGATTAAAAAAGCGAAAGACATTCGTACTGTTGAGGAAAGTTGGAGATTTGTAGATTTTAAAAGATATTCTATCACCTACGACAAAAAGTTAGCACTTCCAGCCATCGAGGGTTGGGCAAGGTATGAGGGGGATTTAACCCCATTCACTGAATTACTAGAAATAGGAAAATTACTACATGTTGGCAAAAATGCTACACATGGATTCGGACATTATGAAGTTTTTGCTGATAACTAAATTTTCGAATCTAGAGCAGGAGACAAAACCGTCCTTTTTGACAAGCAAGATGTTGATTCCATAAAAATACTGCCTGCAAACTGTGGTGCGAACCCCAAGCGCACATAAAATCCCTAGATCACCCGCACCAAAAAAGAGCTAAAATATGAAATAATGTGTGTAAAAGTGTTGAAATGTTGTTAGTTTCCCATGATATTATAAAGGAAAGCAGCGGATTTTCCCTAATATTTATTGTTTTACTTCAAAAAATAGGGGGATTTCGCT # Right flank : TATATTTTCAATTCGATACAAATGTAACCCCGTTTTATTTAAAAATGCCTGTAACTAAACAGCCATTACGCAACGATCCGACAGTAATTGTATTCCAGTAAAGCCTATAAAAAGTAAGAAAGGCCTCGGCACAGATACCGAGGCTACAGTTTTTAGAATGGTATATCACTTTTGCCTGTTGATTTAAAAAAAGTACATTACTTCGCCCGCAGTTTTAGCAAAATTTGACGAGGATAAAATGGCAACGATGGCTGACAGTTCGTCCTACCATTTGATCAACGGAGGCCTGTTTCTGAAAGATAGTCTATGTTAACAATAAGGGAACATGCTATAATTGAAGAACAATAGCATAACGGTTACTCAAGGGTGGTCGGCACACTCCTCCGAAAGGGGGTGTTGCTGTATGACAGTATTTGAAGGGATTTCCCTTACGTTGACGTTCGGACTTCTGATCGTTGCAATGCTGTCGTTTCACAACCATAAAAAATAATCCACCCTTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTACTCCTTGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 5 225044-225812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHYG010000006.1 Alkalihalobacillus clausii strain 179-F 5B1 HS NODE_6_length_226074_cov_251.159896, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 225044 32 100.0 34 ................................ TTGTAGTCTTTGCCAGTCGGCGGCAATATCTGCT 225110 32 100.0 36 ................................ CTGCGTGATTAAAGGCAAAGAAAACGACATGGTTTA 225178 32 100.0 35 ................................ AATATAGAGAAAAACCACCAACCAAGGACATTTTC 225245 32 100.0 36 ................................ CAGTCATTGCACTGTCCCAACTGTCGAGGGGTGTCG 225313 32 100.0 35 ................................ ACTTGGGGGAGTAATCCCCCCTCTGGTTGGCATGA 225380 32 100.0 36 ................................ AAAAATGCACAAGGTCAAATAGATAAGTTGGTTGTA 225448 32 100.0 35 ................................ TCCCTTTTGACTCGAAAGAAAAAGCGGAATGCTTT 225515 32 100.0 35 ................................ TAATTTTTTTACCCATCCTCGTATATACATCCATG 225582 32 100.0 34 ................................ GAAAAATGTCCTGGGATGAGCCTGCTTTAACGAT 225648 32 100.0 34 ................................ TTTTGTTTAATAATTTCACGTAATGTACCGTTAG 225714 32 100.0 34 ................................ TTCCCTGTACGGTGTTTGTATTGCTCATATTTAT 225780 32 93.8 0 ............................GG.. | T [225808] ========== ====== ====== ====== ================================ ==================================== ================== 12 32 99.5 35 GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Left flank : CGCCATTTTTGTGGAAGTAGGTGAAAACATGCTCGTCTTGATTACATATGATGTCCAAACGTCAAGCCTAGGAGGGTCCAAAAGGCTGCGCAAAGTGGCCAAAGCATGCCAAAACTACGGACAACGAGTACAAAACTCCGTTTTCGAGTGTATTGTGGATTCAGCTCAATTAACATCATTAAAACTTGAACTCAGTAGTTTAATTGATAAAGAAAAAGATAGTTTGCGCATTTACCGATTGGGAAACAACTATAAATCGAAAGTGGAACACATTGGTGCAAAACCAACCGTAGACATAGAGGATCCTCTGATTTTTTAATGGTGCGTACCCCAAGTGAACATAAAATCCCTAGGGGACCCGCACCAAAAAACAATCGAAATATGTGTAAATGTGTATTAATTTGAAATAAGATGTTGTTGATTTTAAATAATTAGAGTAGAATCAATGAAGATTTCCTACTTTAAGAGCTTTTTTCCCTTTTAATTAGAGGATTTCCGCT # Right flank : AGGTTACACTTAGTTGGACAAATGCTCTAAGGTCTACTAGACTAGATGGAATCATCCAATGAAGGGATCGGGATATCATGACTGAAGCCAAACGTCCACGAAGAAGGTTCACAGCCGAATTTAAGAAACAGCTTGTGCAACTGTATGCGTCCGGAAAGCCGAGAGCGGAAATCATCCGTGAATATGAACTGACGCCATCTGCTTTTGATAAATGGGTTCGTCAATACCAAACAAGTGGCGCATTCACCGAGAAAGAAAATCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTTCGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //