Array 1 23541-23906 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVIP01000008.1 Roseobacter sp. HKCCD6497 NODE_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 23541 36 100.0 30 .................................... CAGCTCTATCAGTGCATCAGCTTTGGTCAT 23607 36 100.0 30 .................................... CGCAGCCAATACCGGATGGTTCGGGCGCTG 23673 36 100.0 30 .................................... TCGTCGTTGGACCATCCGCAAAAGTAATAG 23739 36 97.2 30 ......C............................. GCGACCGCATCCTGCCCGTAATACTTGTTC 23805 36 97.2 30 ......C............................. TGTCGGCCCCTGTCTTACTAGGCGACAGAC 23871 36 97.2 0 .................C.................. | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 98.6 30 AGTTTAGTCATTCAGAATTCGAGGTCCAGCCGCAAC # Left flank : ATGTATACACCCGGAACGGCAATCCGATGATCATCGACGTGCCTGACGAGCCCGGCGCCTATGTGCTGCGCTACTTCCTCGGGCAAGATCGGGTCGTGATCGCCGAACACCCGCTCGTCGTGCAGTAACGCCGATCAAATGCGGGGCGATCTGACGAAGGCCGCCTCGCAAGTCTGACCACAGTCCGCCCGCGCGCCCGCGACCACGGCGCTGTCTCCTTCCTCGCCTTTCAAGACGGCACGGAACTGCGTGGCAAGAGCGGACGATGCTTGAGACCTGATCAGGTTCAACCTTACGGCGCCGTTCTCCGATGTGCCGCCGCCAGATACGTCATTTCGCATCTCCACGGTCTCGTGATATGATCTCCCGGTCAGACCCAAGCCGTCGGGCCGCCCGCAAAAATCTAGAGAAACTGGGGATGTTTTGAGCCAAATGCGCCGGAATACCACACATAAAGACCGGGAATACCCTTGCAAAAACAAGAGCTTCCCCGGTGATCC # Right flank : CGATCCGAAACCACGTCAATCCTAAGCGCAGACGATCAGATATGGATCACCCGGTCATACGCGTCGAGCACGCTTTCATGCATCATCTCGCTCAAGGTCGGATGCGGGAAGACGGCCTCCATCAGGTCTTCCTCCGTGGTCTCTAGTTGACGGCCCACTACATAGCCTTGGATCAGTTCGGTCACCTCCGCACCGATCATATGAGCGCCGAGAAGTTCCCCCGTCTTGGCGTCAAAAACCGTTTTGATCATGCCCTCTTGTTCACCAAGTGCAATTGCTTTGCCGTTGCCAATGAAGGGGAAGCGGCCGACCTTGACGTCATAGCCGAGCTCCTTCGCCTTGGCCTCGGAATAGCCCACGCTGGCCACCTGCGGGTGGCAATAGGTGCAGCCCGCGATGCTTTCGGGTTTCACCGGATGGACCTTGTTTTTGCCCGCGATCAGCTCGGCGACCATCACGCCTTCATGGGAGGCTTTGTGGGCCAACCAAGGGGCACCCGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTAGTCATTCAGAATTCGAGGTCCAGCCGCAAC # Alternate repeat : AGTTTACTCATTCAGAATTCGAGGTCCAGCCGCAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 797475-797775 **** Predicted by CRISPRDetect 2.4 *** >NZ_WVIP01000001.1 Roseobacter sp. HKCCD6497 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 797475 36 100.0 30 .................................... CGCGCCTTTTGGCAAGGGCGGCTTCGACGC 797541 36 100.0 31 .................................... CCGATCTCTTCAACCGGATGTCCGGCCAGGA 797608 36 100.0 30 .................................... CCATAACAAGCTGCGCCCCTATCCGGGCGA 797674 36 100.0 30 .................................... ACTCTGGCCAATCTTCTGGCCTCCAGCCGT 797740 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 100.0 30 GTTGCGGCTGGACCTCGAATTCTGAATGGCTAAACT # Left flank : TATCGGGCGCGAGCGCGGCGATCAAATGATCGTTGGGGTTTGGTGGCTCGCCGATGAACGTACCCTTGCCCTGACGTCGCCAAACCAGCCCTTCGACCTCCAACGCATCTAGTGCCCGGCGCACGGCCCGGCGGCTGACATTGAAGCGCCCAGATAGCTCCCGTTCTGTCGGAAGTTTTCCGTCTTTCTCGACCGCGCCACGACGGATCAACTCGCGAATCTTGGCGCGAGCGAGCGACGCGTTGTCTTGCATGATCTGAGCTGTATCGCGCACGGCTTTCTCCAGAACCGGGACCAAAGTGGATTTGGTCCGAACCAATTTTACTTTGGTTCGCGTGCCGCAAAGTTGTCAAGCGATTCCCATCCCGGGGCTAAGCCGGGCCGTAGATCGGCGACGATGGCGGTGGGCCGAAGGGGCGAGAGACGGGATGTCGACTAGCTGTTCGGCATCCGAGTCTGTGCGTCCGGTTGCTGGGCCATGCGAGGGGATGCAGGCAACG # Right flank : TCGATCGCCGTGTATCTTCTTGTTTTTACAAGAGGATACACGGTTTGTTGTTACGCAAATCCGCTCAATTATCTTCAAAACATCACCAATTGCTCTGGATTCTTGCGCGCCGCGCGTCGCCCTTGATCTGAGAAATGAATGATATCTCGATACTGACGATCCGTGAAATTGAGGATCTGAATGTCGCCCATCGCAGGGAGGTTCCGTTCGATACGGGTCACCCGGGTCTGAAACGCCTCCTTGCCATTCACAAACCGGGCATAGACCGAAAACTGGCTCCGCTCGAAGCCCCCGTCGAGCAGGAAGTTGCGGAAATCCGTGGCCGCTTTGCGCTGCGGCTTGGTGTCGGTGGGCAGGTCGAACATCACAAGTATCCACATGAGGCGGTATCCTGAAAGAATGGCGGGCTGAAAGGTCATGCACCCAACCCCGCGAGCGTCAGGGTATCGGGCGGTCGCGGCAGGGCGAGAGAGAGCTTGCCGGTCTCGAAGCTTTGCCCA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCTCGAATTCTGAATGGCTAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCTCGAATTCTGAACAGCTAAACT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //