Array 1 1553-2375 **** Predicted by CRISPRDetect 2.4 *** >NZ_LISV01000019.1 Staphylococcus carnosus strain 336 Cont0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 1553 36 100.0 36 .................................... AAGAAATTAAGAATATCCTCGTTATACATTAATTCT 1625 36 100.0 37 .................................... ATTAACCTTTAAAGATGATTTGAATGCAGATATTATT 1698 36 100.0 36 .................................... TGCAAGTTTGTCATAATAAACATCTCCTGATTAATT 1770 36 100.0 35 .................................... AAAAAACTTAACCCCGTTTATTCTAGCAATCATTT 1841 36 100.0 33 .................................... TCATTATAATCAAATCCTTTTCGTTTTTTTTGT 1910 36 100.0 35 .................................... CCACCTTGACCATTCTGTCTAGCTTCTACTTGTCC G [1938] 1982 36 100.0 35 .................................... TATTAAATGTAAAGAATTTGTGAGAGAAATTAAAT 2053 36 100.0 35 .................................... GCTTTGTCCTTCTCAATAGCTAAGTTAAATAGTAA 2124 36 100.0 34 .................................... TTTTTTCTAGCCCGTTTTCTTCAAGATTTTTCAT 2194 36 100.0 36 .................................... TTATTCAAATCACTCATTGTTTTCTGCGTGTCTTCT 2266 36 100.0 39 .................................... ATAGTTAAAATGTCGTTATTACTTCTAGTCTGTGAAACA 2341 35 88.9 0 ......................C........-..GT | ========== ====== ====== ====== ==================================== ======================================= ================== 12 36 99.1 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : CAATTGGCGAAGGGTTGCTAGTTGTTTAGCATTGCAGAATTATATTTCTATAGTAAAAGGTTTATTACATCATTTCACAGCCATCGATGACGAGGAAATACTTGATAAAATCTATGAAGAATTTATGAATGATGACTCCATAACAACATTACTTAACAATGATTTTCAAGATATTATCAATCGCTACTTATCAAAATGAAGATACATTACTTTTTAATAAACTAAGAGCACCCTTCACTTTGCGGTGAGGAATGCTCTAATGTTTATTTTTTTTTTGTTTAAAATTTAAAAAGAAATGAAAAGTTGAATTTATATTGATTTTATTATAAGATTAAGCGAGAGCATCTGAAGTGTAGTATACTATTAATACAAGTGAAGTTATTATAAAACTTGTCAAAAAATATGACATATCATATAGTAACAGACTATCAATTGTCACATTTTTTGACAGCAAAAATGACACTTAAACTATGGTTGTCACGGCATTTGTTACAGTATCG # Right flank : TGTATTTTTTTTATAAGCACTCTAAAAAATTTAAAAAAACTACATTGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTGGAAAATCATTACTTTGTCACTGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCAATTATTTTTGATCATTATAAAAGTTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAGAAACATTCTCCACTAACTCAACTTATTTCCTCTTATGGAATGACACATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTAACAGGAAGAACTAGAGAGAGAATATGGAAGAAGATTGTTATAAATAAAATTATTAATCAAGCACGATGTCTTGAAAATAATTTACATACAGGAAATGTTAAATTATTGTTAGAATTTTCAAAAGAAGTTAGTACAGGAGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], // Array 2 11091-11636 **** Predicted by CRISPRDetect 2.4 *** >NZ_LISV01000019.1 Staphylococcus carnosus strain 336 Cont0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 11091 36 100.0 37 .................................... AACTCAATCACTTGCACGCCTACATATGGTGTTAATA 11164 36 100.0 37 .................................... CTTCGCAATCTGACCTACTGTCACTAAACTTTTGTTG 11237 36 100.0 37 .................................... TAATAAATTGATTGAAATCCATAATTATCTTTTCTCC 11310 36 100.0 38 .................................... TGAAACAACAGGCCATAATTATTTTCTTCGTCGTTCAA 11384 36 100.0 36 .................................... GGAAGAAATCATGCAAATACTAACCAAAGAAGTAAT 11456 36 100.0 37 .................................... CTTAATTGTGCTTTGTTCATATCCTTGTAAAAATTCT 11529 36 100.0 36 .................................... ATAAATTTCATTTACTCACTGTTCTTTCTTATAATC 11601 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 8 36 100.0 37 ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Left flank : TAAGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTGGAAAAAAACATTAATATTGTTGACTATAAATTGAAAAGTACACGATTTAACTTAGAAAAAGTTAAAATCCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGACCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAACTAGAATATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTACAAGTGATTTGTCGCTATTTTTGACAGCAAATTTTGCCTTTGAACTATTGATGTGATAGGCTTTAAAGAGCTATCT # Right flank : CCTTACTTGCTGCCTCATTGTATTCTTTTGTAATTTGTATTCGATAACCACTTTGTATAAGAGTGGATAATAATTTATAATTTCATAGTTAACTTGATTTTCAAATACAAAAAAACTCATTTGCATTTAAAAGTAGAAATTAATTAGTTTAAATAATAAAATAAGTAATGAGATTAATAAGATATTGGAATTAATAATTAGGAGGGGTTAAGTAGTGGAGAACATTGATGGTAATAAAATGAATAGTATTTTAAATTGGATTTATGAAAAAATTCTAAGTGGGCTTACCAGGAGCTTATTCAGCCGAAGAATTAGCAAATAAATATTTAGAAAAATATAAAGATGAAGACAAAGTTATTAATAAATTAATAAAAGGACAGTTAAGTAAAACTGAAACTTTCGGTTTCATTACAGGCTTAGGCGGTATAGCTACACTACCAGTAGCACTCCCCGCTAATATAACTTCAGTTGTATATGTACAAATGAGAATGATTGCAGTC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGATAACTACCCCGGAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 3 13484-13808 **** Predicted by CRISPRDetect 2.4 *** >NZ_LISV01000019.1 Staphylococcus carnosus strain 336 Cont0013, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================== ================== 13484 34 100.0 37 .................................. AACACAAGAAGAAAGCACAGTGAAAGACGTAGCAACT 13555 34 100.0 39 .................................. AACTGAAAGATCTAAATTTGACTCTTTTAAATTACTTCT 13628 34 97.1 39 A................................. AACTAATGAATCATAATACTCATAATCAATAGTTAATAT 13701 34 100.0 40 .................................. AACTCTACATTTACTTTTACTTCTGACATATAAAGTCATC 13775 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ======================================== ================== 5 34 99.4 39 TAATCGACAACCACCCCGTAAAAGAGGGGACGAG # Left flank : TTAACTGGGCAAACAGCAGGTGATATATTAAAAGATGTTGGAGTAAAGTTTGCACAAAATGTTGGAAAAGCCCAAATTAAAAGAATACCAGGAAGTGTACTAGTTAAAATTAATCAAAAAATAGGATTTAGATTAGTAACTAAATTTGGTGAAAAAGGATTAATTAATCTAGGAAAAATGGTTCCAGTTTTAGGCGGTGCAGTGGGAGCTTCATTTGACGTAGTTTCAACTAGAGCAATTGCAGAGATAGCTAAAAAAACTTTTGAGCCATTTGATCAAGATAATGATAGAGTAAGAATAATTATTAATTAGAGTTAAATTAATGACTGCTTTTTTATAGCGTAAGTAAAAAAATAGTCTATATATTTAGTTGTTGAAAAGAGGGATTAGTTTGTCAAAAAATATGACAAGAAGCACTTATAGCATGGTCAGTTTGTCACTATTTTTGACAGCAATTTTCACCTTTGAACTACTGATGTTATAGGCTTTAAAAAGCTATC # Right flank : GTACCTCATCTTGATGATCTCAATTGGCTTGGTTCAAAAGAAATCGATAACCTCCGTAGAATAGAGAATAAGTATTAAAAATATATTTGATTTGACAAAATATTCTGCAAAAAAAGGGGAACAAAAAATCAAGATTTAAACTGTAATTCATTATCTTTGCAATTAATTGACATTCATTTCTAAATAAGCAGAAACAAAAATAACGTTCATACAAATAATTTCTTTATGATTAAGTTAGAATTAGAAAATCAATGCGAAATACGAATAACAGCGAATGGAACGTATATTATTGAGAGATTGGATGCAGTGTATTGCAATTCGAGAGTTGCTACTTAAGAAATTAAAAAGAAGAAAAACAATCTAACGAACATCAAAAAAATGTAAAATCGAATGAGCAAACGAAAGAGCCATCTGCCAATGATAAACAGAACTCTGGCACAACAGAAGAAAATAACAATGATAAAAATACTGAGAATAATAAAAAATCAAGTCAAAAACAA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TAATCGACAACCACCCCGTAAAAGAGGGGACGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA //