Array 1 59281-61291 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOHX010000017.1 Clostridium perfringens strain 1805-113 NODE_17_length_66231_cov_79.2564, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 59281 36 86.1 29 A...C.TA..A......................... CAGCTGAAGAAAAAGAAGCCATAAGGCTT A,A [59283,59293] 59348 36 100.0 30 .................................... TAGTTGAAGTTCTTATACCATCTACAACAT 59414 36 100.0 30 .................................... TTACCATTTCCGTTATGAACTGAACTCCTT 59480 36 100.0 30 .................................... TCAGCGAACAACTTCAAGGGAATATAATTA 59546 36 100.0 30 .................................... GAAAAAATGAAAGAGGGCTTATATAAAATA 59612 36 100.0 30 .................................... CTTGGGGGTGGATTAAAAGCTCAAGATGCT 59678 36 100.0 30 .................................... GATTTATTAATTCTAGGCACACAATAGAAA 59744 36 100.0 30 .................................... TGCTGCACTAAATATTACCCCTCCAAGTCC 59810 36 100.0 29 .................................... AAAATGAAAGTATAAATTTAAATATTTAT 59875 36 100.0 30 .................................... TATGAATTATCACTTGGAAACAATCCTATT 59941 36 100.0 30 .................................... ATTTATTCTGATTAAACCCATCAAGGAATT 60007 36 100.0 29 .................................... GAAATGGGTTCTTTGTGTACTAAAATAAG 60072 36 100.0 30 .................................... CAACTTTAGACAAGGGCAAGTCATAAGCTT 60138 36 100.0 30 .................................... TCATGCAAAGATGAAAAGACAATAATTAGT 60204 36 100.0 30 .................................... TATCTATTAATGTTTGATAATTTAAAACTT 60270 36 100.0 29 .................................... TGCTTATAAGACAAGAAAGAAGAAAAGTA 60335 36 100.0 29 .................................... TGATGGTAAGTGGCAAAATATAAAAGATG 60400 36 100.0 30 .................................... TATGGAATGAATCCTAATTTCAATCCTAAC 60466 36 100.0 29 .................................... CTTCTAAAGCTCCTAAATTACTGTTAGCC 60531 36 100.0 30 .................................... CTTATCAAATGATTATCATATGAGAATACA 60597 36 100.0 30 .................................... CTCCAGTTTATTATTAATACCTCACCCCTT 60663 36 100.0 29 .................................... TTTAAAGCATCACTCCAACGCCCTTTTAT 60728 36 100.0 30 .................................... GCTGTTTAGATTATTGGTTGTGGGATGTTT 60794 36 100.0 30 .................................... GGCAACTCCTACATATTCCACTTGTACGCT 60860 36 100.0 30 .................................... ACAAAATGTATCAGAACGGCGAATTAGATG 60926 36 100.0 30 .................................... TATGTTTCTGTTGTTGAGTTTCAAAAAAGA 60992 36 100.0 30 .................................... AAGAAAAACAGCTGATAGTTTAGATAGTTG 61058 36 100.0 30 .................................... GAATTCATTGAAGAACTTGAAGAACAATAA 61124 36 100.0 30 .................................... GTTTCTTAGTAAGGAGACTTCTTTTTATTT 61190 36 100.0 30 .................................... TGACAATGCCATGCTCCCCTGCCTTGTGGT 61256 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTTTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGGTTATTAACTTTCAATTCTCTCATAATAACAGTAGCCCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTCTCATTTAACTTAATAAGCTCAACACCATCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTCTCATCATACCAAAAAACAATATGACGTACTTTTCCATCACTTAATGGCTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : TAGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAGTACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTCTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGTTTTATCTCTGGCAATTTTAATAATCTAAAATCTTTTTTACTACAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAACAGAATGATTTTTTCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [96.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //