Array 1 1-1436 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUP01000036.1 Eggerthella lenta strain 19C NODE_36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 67 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 133 33 100.0 32 ................................. GAGTTCGTTACCGACACGATCGGCCTCATCGG 198 33 100.0 34 ................................. GAGCTCGCCTGTGTACCCGTCGTTGGTGACGATG 265 33 100.0 34 ................................. ACGTTGCCCGGATCGAGCTTGAGCGCGCGCTCGA 332 33 100.0 35 ................................. TCGACGACGGCCCTCACGTCGTCGATGGTGCGGCC 400 33 100.0 34 ................................. TATCACATGGAGCGGACGAGGTTCTCCGCGCGAG 467 33 100.0 34 ................................. ATCTTGGGCGTGCCGGGAGCGGGCAAGAGCTTCA 534 33 100.0 34 ................................. ATGGCGAGTACTTGGACGTAGTTGACGGTCGCCG 601 33 100.0 36 ................................. ACGTATACGGGCTTCGCGCCGGTGCCGTTGACGTCC 670 33 100.0 33 ................................. GACAACGCGATGGCCAAGGTATCGACCATCGCG 736 33 100.0 33 ................................. GATCCGCTACGACAACGTAGGGGATCAGGCCGA 802 33 100.0 36 ................................. AATGAATCGATCAAGCGCGCCAACGGCGAACTCACC 871 33 100.0 34 ................................. GAAACCGTGCGCGACGGCGGAAGCAAGCTGGACG 938 33 100.0 33 ................................. GGAGAAACATATAAAAAGGACGGTGTAATCTCG 1004 33 100.0 35 ................................. CAGTTGATGTCTTTTCGCAGGTCGATGGCGCACGC 1072 33 100.0 34 ................................. AAGCCGACGAATACGCCGGCGAACGCCATTCAGC 1139 33 100.0 34 ................................. AGGCCCTGTCGGCCCGGTCGGCCCTGTCGGCCCC 1206 33 100.0 34 ................................. ATGTCGGCCTTGGTGAACTCGGACAGGTCGAAGC 1273 33 100.0 33 ................................. ATGCTACTAGACGATTTTTTTGTTCCGAAATTG 1339 33 100.0 32 ................................. GGGCTGACGACCCAAAGAAAAGTCAGCGCCGC 1404 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 100.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : | # Right flank : TACTATGTTTACAGTACCGAGGAGCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 28-193 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUP01000050.1 Eggerthella lenta strain 19C NODE_50, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 28 33 100.0 34 ................................. TACTATGTTTACAGTACCGAGGAGCTGAGGCCGT 95 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 161 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 100.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GACGACCCAAAGAAAAGTCAGCGCCGCG # Right flank : TAAACGAACTTGAACAGACGCATTTTGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 29-805 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUP01000019.1 Eggerthella lenta strain 19C NODE_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 29 33 100.0 33 ................................. TAAACGAACTTGAACAGACGCATTTTGATAACC 95 33 100.0 33 ................................. TGGCAGCCTCTCGCAGGGTCTCGGCTGGCTCAA 161 33 100.0 37 ................................. GAAAAGCTGCACCGGCGTGCCGACCGTGATGCCGTTA 231 33 100.0 36 ................................. GGCACTGACGTGAACGAAAGCGTCAAGGCTGCAAAC 300 33 100.0 33 ................................. CCCACCGCGATCACCCAGAACGTCGAGTACCTG 366 33 97.0 33 .............C................... ATGTCGGGGAAAAGGCGCGAACCCATGTAGGCG 432 33 100.0 38 ................................. CAGGTAGGCGTTGACGGCCTTGTCGTTGGCCTCGGCCA 503 33 97.0 33 ..T.............................. CTACGATGCCATGGCGTCCTATGCATTCACGGG 569 33 97.0 34 ......T.......................... GAGGAATATACGCGATTCGTTGAAACGGATGTAG 636 33 90.9 36 A.....T...................G...... GGCACCGCGGTGTACTCCGTGCTCGAGAACGCGCGG 705 32 93.9 34 ..............-.................C TGTTCGGGTTGGCTGGCAAGCTGAACGCTGACAC 771 33 75.8 0 .....GTT.A..T.....C.C..........G. | T,C [775,787] ========== ====== ====== ====== ================================= ====================================== ================== 12 33 96.0 35 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : CTTTTCGCTCGTCGCGTTCGTCGAGCTGG # Right flank : TCGCGCGCAGCTGTCGTGGTACGGCCGAGGCGTGGTCGGTCGTACCACTCGCGGGCGCGCGGGTAGAAGCAGGGTATCCGGGTTGAAATCGAGCAGCGTTTCGGCAGGTTCTGTCGCTCCCTAACGAAGGGGCGACCGATCCTTGCCGTCGCTTCCTATCGAGAACGCGGATTGATTCGCTGATTCCGAGTTTTGCTCGTCGGACGTCTGCGCCGAGTTGCGAAAGGCGCAGACGTCCTTCGGATCGCTACTCCACCACCAAATCAACGAACTCAAACGTCGTGCAGTCAACCAGGCCGCGGTTCGTCAGGCGCAGTTCGGGCAGGCATGCTAGCGGGATCAGGGCCATCGTCATGAACGGCGACGGCATGGTGCAGCCGATCTCGGCCCATGCGCCCTCCAAAGCATGTACCTTCTCGCTCATCGTTACGGCGTCGAGCGAGTCCATCAAACCGGCGATAGGAAGCTCCACCAACCCCAGGATCTCCCCGTCGGCGACC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 76588-78751 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPUP01000016.1 Eggerthella lenta strain 19C NODE_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 76588 33 100.0 35 ................................. GCAAGTACACGTGCAGAGCCGAGATAGCGCGCCAG 76656 33 100.0 35 ................................. CGGAAAGTCGGATTCGAGCGGAACCTACGACAACA 76724 33 100.0 33 ................................. CCCCAGAACATGCAGGTTACGTCGTAATCACGC 76790 33 100.0 34 ................................. TGGGCTAAAACGTTCGATTTCAACGCGCAACTTG 76857 33 100.0 33 ................................. AAGCAAGGCATATGGCAACTATTTGAATGGCAC 76923 33 100.0 33 ................................. CTGCGCCCGAAGACCTATATCGAGGACGAGGGC 76989 33 100.0 33 ................................. CCTATTGTGGCTTGCGTGGGCATGTTTTACCTG 77055 33 100.0 33 ................................. ATCTACGGCATTCGAGGTGCTGGCAAGACCTAC 77121 33 100.0 34 ................................. AGGACGGTTGACCCGTCGAACACGAGGGCGCTAA 77188 33 100.0 34 ................................. CTGAACGACTACGGGCTGCAAGACCTCGTGGGGC 77255 33 100.0 33 ................................. CCCTTTATTACAGGTACATAAACACCGACCGCG 77321 33 100.0 33 ................................. TACTCCGAAACGGAGTACATCCATGACACGGAG 77387 33 100.0 33 ................................. CGACACCTGCGCCTGAGTGTTTCCGATGGTAAG 77453 33 100.0 33 ................................. ACGATCAGCCCGCCGTCTATCCGATGGCGCAGC 77519 33 100.0 33 ................................. CAGATGTCGCCGTTCATGGGCGCTTCAAGATCG 77585 33 100.0 33 ................................. CTCATAGTATGCGGGGCGCTGATGCGCGCCCCG 77651 33 100.0 33 ................................. CTCATTGGTGATCTCAATTCCAACCGGCACGAA 77717 33 100.0 34 ................................. TCCAGTATACAGAGCGTTGCGCAAGTTGTCCTGG 77784 33 100.0 33 ................................. CCGTGCTGCGCCCGCCCAATTCCATGAAAAGGC 77850 33 100.0 34 ................................. CAAAACCGAGAGGATGCTCATATCCGACGGCCGC 77917 33 100.0 33 ................................. AGGCCCTTAAAGCCCGCAATTACGACCTGTTGA 77983 33 100.0 34 ................................. ACCTTGTAAAAGCCGTCGATGCGCGCGTACTCGG 78050 33 100.0 35 ................................. TCATATTCATAGATGTTCTCTGGCAGTCCAGGGAG 78118 33 100.0 33 ................................. CACATAGTCACGCCATAATCATCGCGCGAGAGC 78184 33 100.0 33 ................................. TACTTAGTGTGTTATATGCGCCGCAAATACTAT 78250 33 100.0 34 ................................. GGATACGCTCTCATGCATGCATACCCTGTGGCCG 78317 33 100.0 35 ................................. TTGTTGTCGCCGTTCCTCGCGGCAGCCACCTCGGC 78385 33 100.0 33 ................................. CGATGCCGACCACGACGATAGCGCCCATGATGG 78451 33 100.0 32 ................................. GGGCTGACGACCCAAAGAAAAGTCAGCGCCGC 78516 33 100.0 34 ................................. TACTATGTTTACAGTACCGAGGAGCTGAGGCCGT 78583 33 100.0 37 ................................. TTGCCGACGTGCTGGACGGCTACAACCGCACCCACGA 78653 33 100.0 33 ................................. AGCCTCTTTTCGCTCGTCGCGTTCGTCGAGCTG 78719 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 33 33 100.0 34 GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Left flank : GCGCGGCGATCTAGACGGCTACCCGCCGTTTCTATGGAAGTGAGATGGTTGGCATGCTGACAGTGATTACCTACGACGTGAATACCGAGGATCCGGCAGGCCGACGTCGCTTGCGAAAAGTGGCGCGACATTGCGTCAATTACGGTCAGCGTGTCCAGAACTCAGTGTTCGAATGCGTTGCCGATGCTGCGACGATGGTTCGTATCAAGAGCGAGCTCGTCGAGCTGATCGATCCGGAGAAAGATAGTTTGCGATTCTACAGTCTTGGAAGCAAATATGAGACGAAGATTGAGCATGTAGGTGCGAAGCCAACGTACGAAGCTGAAGGGTTCTTGGCATTGTAGGACCATGGTGCGAGCACGAAGCTCGCATATGACATACGTGAGGTTCGCACCAAATAGTGTGACATAAAGATGCCTGACGCGCTTGTTGCGTGTACCTTGTTTGTCTATTGGCGCTATATGTTGATCGAGGCAGTAAATTTTGCGCATAATATTGCG # Right flank : TAAACGAACTTGAACAGACGCATTTTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACTCCCCGCATGGGGAGTGCGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //