Array 1 45517-46217 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLU01000041.1 Escherichia coli strain SC390 NODE_10_length_171704_cov_141.159_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 45517 29 100.0 32 ............................. TAAAGATGCGCTGGCAACTATCCTGAAAAAAC 45578 29 100.0 32 ............................. TGCTGGACTGGTCAGAAATTGAGTTTGAAGCG 45639 29 100.0 32 ............................. AAAACCAACCAATTGCGGTTGGTTTTTTTATG 45700 29 100.0 32 ............................. AATTACATACTTTTTTAATCAAGGGCATGAAC 45761 29 100.0 33 ............................. TCGGGCGCATTGGGGTATATGAAGACAGCAAGC 45823 29 100.0 32 ............................. GTGTATATCCGAGAAGCAACCAGTTCTGGATT 45884 29 100.0 32 ............................. GTCGGATAACTCTTCATCGGCGCGAATCATGC 45945 29 100.0 32 ............................. AGCGAGGGGCGATTCCGGCAGGGCGTGCACAT 46006 29 100.0 32 ............................. GGCGCGGCGAACTCCAGCACAACCAGCCTGCG 46067 29 100.0 32 ............................. GATAATGTTCATCATATAAGAGAACGTCAGGT 46128 29 100.0 32 ............................. CAATGGGGGCAACGGTTCCCCTGGTTTTGTCA 46189 29 93.1 0 ........................G...A | ========== ====== ====== ====== ============================= ================================= ================== 12 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTTTTGGCGACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGATTGTGCATTGAAACCTGCATTGCTCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGATTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGCGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTCGGTATAGGATTACTTTAAATATTTAGCTTTTCAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATTATTAATTAATAATAGATTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTATTAAGCAATATATCCACGTAACACCTCATGTTCAAAATAGCTCTCCATATATGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAAATCATTAAGAAATTATCATATATTATTTTTTTAATATTGAATTGATGTTTGTTAATTTTTTCTTTAGGATAATAGATTGTTTTTTAAGCTTATTATTCATTGATTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGTCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 71766-73868 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOLU01000041.1 Escherichia coli strain SC390 NODE_10_length_171704_cov_141.159_ID_55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 71766 29 100.0 32 ............................. GCCGCCGCATGGCAAAACAAACATCGGGGTAC 71827 29 100.0 32 ............................. CAAACAAGCCCCGCGCCGCGTTGGCTGAATAA 71888 29 100.0 33 ............................. CGGTGAATTACAGCCTCCAGGGGGAAAATGGAC 71950 29 100.0 32 ............................. TGATCCGCTATTGATTCAATCGCTTCTGACGC 72011 29 100.0 32 ............................. CCGCCAATAATGCGCCCTTCCTCTATTTTCAC 72072 29 100.0 32 ............................. CGCGGAAAAATATTGGCATTGACGGCGATATT 72133 29 100.0 32 ............................. GACCAGTACATCACTTGAGGCAAATACTCAGT 72194 29 100.0 32 ............................. CCGCAGCACCAGCCGCGACGGCAGCCACCCAC 72255 29 96.6 32 ............................C AGATAGGTCAGAGCGCGCAAGATTGGGCGAAA 72316 29 100.0 32 ............................. CAGATATTATAATCTTGCTCCCGTATATAGCT 72377 29 100.0 32 ............................. CGAAGCTCCTTCCGTTGATTACCAAAACGTTG 72438 29 100.0 32 ............................. TGTCGAGCAACTACATGTTTGGTGTTGATTGT 72499 29 100.0 32 ............................. CCGGGCCGCTGAACGTTTTCCCCGTCGCACCG 72560 29 100.0 32 ............................. AAGGCGGCAGAAATAAAGTAATAAACGGATTG 72621 29 100.0 32 ............................. GTGGACCGGAGGGCGACAGGCAAACCTGTTTT 72682 29 100.0 32 ............................. CATCTGCACCAGCTCGGCACTGATTTGATCAT 72743 29 100.0 32 ............................. TATTCCCCGAATGCTGGTCTGGCTGCTGATAA 72804 29 100.0 32 ............................. CGCCGCGACAAATAATCTCAGCACACCTAAAA 72865 29 100.0 32 ............................. CGAAATCGCACGCGCTTCCCGCATGGGGGAAA 72926 29 100.0 32 ............................. GGCTGCATATGAGCACGAGACACCCAGTAATT 72987 29 100.0 32 ............................. GGCTGCGTATGAGCACTAGACACCCGGTAATT 73048 29 100.0 32 ............................. GCCATTGACCAGCGTTTAAAATCCTCCCGATC 73109 29 100.0 32 ............................. GCTATTACATGTGTGATTTATTACATCTGTAA 73170 29 100.0 32 ............................. TTGACGCCAGCGGCGACCCTCGTCACGGCTTA 73231 29 100.0 32 ............................. CAGTAAATAACGCATTTGATGTTTGTAGTATT 73292 29 100.0 32 ............................. TGATGAAAACCATTACCAAAGAACGTCTACAG 73353 29 96.6 32 .....T....................... GTCGTAGGTGATGAAAGAAAAGAATGATTTAT 73414 29 100.0 32 ............................. TAAACTATTCAACTTCATCTCATCTAAAATCT 73475 29 100.0 32 ............................. GGTCAGTGGTCTGTTCATGATGTACTCCATGT 73536 29 100.0 32 ............................. CCGTGGGCTAAACGATTGACGCGGCCTGACGG 73597 29 96.6 32 ............................T TGCAAATCGGTGTTATCGTCGAGCGTCCGCTC 73658 29 100.0 32 ............................. ACAAAATAGAGGACTTTGGTGAATATGCGGTA 73719 29 96.6 31 ............C................ TCAGCATTTGCTGGGTACGGCGCGGATATTG 73779 29 96.6 32 ............C................ AGAGAAAACGGCCTACTCGTAGTTCCCACACG 73840 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.5 32 GAGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCTATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGAGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //