Array 1 150556-151664 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136472.1 Enterococcus caccae ATCC BAA-1240 acOtn-supercont2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 150556 33 100.0 33 ................................. TTGCTGCGGTAAACGTTCTAAATCTCGTTTCGA 150622 33 100.0 34 ................................. CTCTACGGTGAAAGAAACTTGTCAAATAAATATG 150689 33 100.0 35 ................................. AAACCATCAATGTCGTTATCTTGATTAAATTCATC 150757 33 100.0 33 ................................. AAAAGATTATATAACTAAAGATATTAGTATAAC 150823 33 100.0 33 ................................. TAGGATTATCCCAAGAATAGTAAATTTTATTAG 150889 33 100.0 34 ................................. TGGGAGAAATGTTGTAATAGGTAAAAATAACAAA 150956 33 100.0 35 ................................. AACACTGCTTACTGACGGATTAGAAGGCGCACCTA 151024 33 100.0 35 ................................. AAAGTCATTCAAAAAGTCAACCGATCGTTTGCAGT 151092 33 100.0 35 ................................. TTCCGTCAATGGCTTGTCTGGTGGAAACTCAATGA 151160 33 100.0 35 ................................. CAGACTATGTGAACGCAGCATTCCCAATTGAAGAA 151228 33 100.0 33 ................................. CCTACACAAATAAAGCTCACCATCTTTAAATAC 151294 33 100.0 34 ................................. ATTTGCTGAAGTCCCGTTGTGATTGTTTTGTCGA 151361 33 100.0 35 ................................. TATGTTTTTCACCAAGTTCAACAACTAAAGTTACT 151429 33 100.0 36 ................................. TACCATGCCTCAGTGGTCTTTTGCCTAGCTTGGAAA 151498 33 100.0 34 ................................. CGGTGCAAAGCTTAGCGGCGATGGTAAATCAGTA 151565 33 100.0 34 ................................. AAATAACTGATATACGGCAATTCCTTCGGTTTCT 151632 33 78.8 0 ......................ACAT..TTC.. | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 98.8 34 GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Left flank : AACGTTTTGAGTTTCTACAAAAAATGAGGGTGAAAGAAGATCAACAATTATCACTTGATTTTGAAGAACCATCATTAGTTGCGGAAGAAAATCCAGAAATTTTTGAAAAATATACTAGTGTAGTTTGGCAAAAGCGAACCTTGGGAGAGGTAACCCATATTTTCAGTCATCTAAAATGGCATATTCTTGTGTTTTATGGCCGACAAACAGGTTTAACAGTTTTGGCTGAAAATCAAGAGTGGGCAACAAAAGACGAATTTTCCACCTATGTTTTTCCAAAACCTCAGCAAAAAATGTTAGAACTCTATAAAAAAGAATTTAAAACAGAAGAATAATTTTGGGTGCGAACTCTAAGTGCACATAAAAACCCTAGGAGATCCGCACCATAAATTTGAGGAATTAAGCGGAAAAAACCGCTTTTTCTCATTTTAATTTAATGTTATAATTAGCTTTAGTAGTGGAATAGCCGAAATATGTAATGTATTTCTACTAATTTCACG # Right flank : TTTCAAGCCCAATTTAAACATCAAAATTTCAAATTCAATCTAATAATTCAAATAGATTATTCCTTAGCACTATGAGAAATCAAACTCCTTAGTATGCAAAGTTGAAAATTATGATATAATTGTATTGATATCGGTGTAATGAACACCCAAAACGAAGCGCAATCAGCTTTGATACGCGATTTTTCGTACTAGGGAAAGTTGGGGGACTATGGCAATTCCAAAAGAAGGTGAATTTGTAACGATTCAAAGTTACAAACACGATGGGCATTTGCATCGAACATGGCGAGATACTATGGTATTAAAAACAAGTGAGTACTCTTTGATTGGCGTGAATGATCATACTTTGGTGACAGAGTCTGATGGACGTCGTTGGGTTACTCGTGAACCAGCGATTGTTTATTTCCATAAGAAATACTGGTTCAACATAATAGCAATGATTAGAGAAAAGGGGGTTTCTTATTACTGCAATCTAGCGTCACCGTATCTTTTAGATGATGAAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTTTAGAGCTAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 208104-209692 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136472.1 Enterococcus caccae ATCC BAA-1240 acOtn-supercont2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 208104 33 100.0 33 ................................. TTGAAGAACTTGTTCAGGTAGTTCCTGAATCGA 208170 33 100.0 37 ................................. ATTTAAATCTAAAGCTACTGTTACCACTAGTGCAAAC 208240 33 100.0 35 ................................. ATGATGATAATTACGCAAGTTTTCAAGTTGGAGAA 208308 33 100.0 35 ................................. AATAATAATCAATTAACATTTTTTAATGATAGTTT 208376 33 100.0 34 ................................. TCAGCTTCTTTTTTCTCTTGTTGCTCTTTTTTTA 208443 33 100.0 35 ................................. ATAAAACCTGAGCCCATCATTTGAGGTCCACCTAA 208511 33 100.0 34 ................................. TAAGCATGTGGCGTTTATGAAGAAATAACTAAAT 208578 33 100.0 35 ................................. AAAAGAACATGCTACTATTATCGCAAATGATCTTT 208646 33 100.0 34 ................................. GTTCCTTTTTTGCTTGCTGCAGCGTGAGATCTCA 208713 33 100.0 34 ................................. GAATACAAGTCTTATTGTCTTAAAAAGAAAAGCC 208780 33 100.0 36 ................................. TTATGGATTCTTTACGTGCTGAATATCAATCCTTGG 208849 33 100.0 36 ................................. AAGATCGAGTTGAGCAGCTGTTGCTGGGTGGATAGC 208918 33 100.0 36 ................................. CTTTAGGATTTAACACGGATACAGGAAAAACGGTCT 208987 33 100.0 33 ................................. GGTCCTCGACATCTAAACTTAATACCAGCAACC 209053 33 100.0 35 ................................. GCCACAATAACTTTTCGGCATTCCCAAAGTAAACC 209121 33 100.0 34 ................................. ATTGATCCGATTAATGTAATCGTGATGTTTTCGC 209188 33 100.0 37 ................................. AGGATTTGCAGAATGTAGTAGAAGAACTGAAAGCAAC 209258 33 100.0 33 ................................. GCCTAAATTCGAATTCATCGTTAAACGTCCATC 209324 33 100.0 34 ................................. TTTTCCTGCTCCAACATTAGCTTTTAATACTTTG 209391 33 100.0 35 ................................. TATCTGTTTTTCGTTTTGGTCCATCTTGCTTGAGA 209459 33 100.0 35 ................................. AAGCCCCATATTAGCTAACATGGATATTTTCGACC 209527 33 100.0 34 ................................. CCCCCCGACGTTTCAATCATTAAGAGACAACCTC 209594 33 100.0 34 ................................. TAATTGCGCCTTTTGCGACGGACTCTGAACCATC 209661 32 75.8 0 ......................-AC...TTTTA | ========== ====== ====== ====== ================================= ===================================== ================== 24 33 99.0 35 GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Left flank : CTGTTATTATGACGAATGCGGAAGCAGGGGAAAAAAATATGACAATCAGTGCAGTTCATGCTGGAAAAACATTTGTTGATATTTTAGGAAATAATCCAACAAAAGTGGTTTTAGATGAAACTGGAGGGGGAACATTTCCAGTGAATGGTGGAGGAGTCTCGGTGTATGTAAATGAAGAGATTGTGGAAAAATTAAATCGAGGACTTATGGATGAACGAGCTTAAAAATAAGGACTTTGTTGATTATTTGTTAGTAAGGTATCACTTAAATTAGTACGTGACTTTTGCAGAATAAGTATTTATACTAAATGTAATGGATTAAATGTTGAAAGAGATAATTTTGGTGCGACCCATAAGTGCACATGAAAATACTGAGGGATCCGCACCAAATTTAAGGGAAAATAAGGATGAAAACAGCTCTTTTTCTCATTGATTTCACATTTTACAGAATTATAGTGTGGAAAATCGACGAAATAGTAATGTTTTTGTTGCTTTTTCACG # Right flank : ACTTACCGATTAATTCCATAAAGCTATATTTCTAATAAATCAGTTGCAATAAATTTCCGGTAAACGAAAAGGAAAGCTATTCCACAAAATTCCATCATTATTAAAGAATTTTCTTCCTATTTTTGGTATAATGTATAAGATTGAAAAAAGAGAGAGGACGTTGATGATGGCACAAGAAAACGCCTTGATCCAAGGTATGAATCCGAGACAAAAAGAAGCCGTTCTACATACTGAAGGGCCTTTATTAGTTATGGCAGGAGCAGGCAGTGGGAAGACAAGAGTATTAACGCATCGTATTGCCTATTTAATTGAAGAAAAAGATGTTAATCCATGGAATATTTTAGCGATCACATTTACCAATAAAGCCGCAAAAGAAATGAGAGAGCGGGTTGGCAAATTATTGGAAGTTGGCGGAAACGACGTTTGGGTATCCACATTTCACTCAATGTGTGTACGTATTTTACGACGAGATGTTGATCACATCGGCTATAATCGCAATT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.70,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 465155-465788 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136472.1 Enterococcus caccae ATCC BAA-1240 acOtn-supercont2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 465155 32 100.0 36 ................................ CCACGCTGCAATTTGAGCGTCTAGTGCTGCTTGGTC 465223 32 100.0 33 ................................ TCTCTTGGCTGCATCTGATAATTGCCCATAGCC 465288 32 100.0 35 ................................ ACAGACTGAAATAGAAAAAGGTCATAACTACCCTA 465355 32 100.0 35 ................................ CCTCTTGTTCGCTGTACTAGCTAAACCCATTTTAT 465422 32 100.0 35 ................................ CAAGATGATCTGCCATATCAGCAAAACCATTATTG 465489 32 100.0 35 ................................ TTGCACTGGTTGTTGAGCTTGTCCGCCCCAATCAT 465556 32 100.0 34 ................................ CGTACCCGTGAATATGGGCAAATATGCTTTTTAC 465622 32 100.0 36 ................................ AATTTCTGTTCTTGGGTTTAAGCTGTATAACTTTTG 465690 32 100.0 34 ................................ CTCCTCTGCTGGTACAGCCGTTTCTTTAATCTCA 465756 32 90.6 0 ..................A...A....C.... | A [465773] ========== ====== ====== ====== ================================ ==================================== ================== 10 32 99.1 35 GTCTCACTCTATTTGAGTGAGTGGATTGAAAT # Left flank : TACTAAATATGGAGATGGTGGTGCAGACATATTACCACTATTCCGTTTAAATAAGCGTCAGGGAAAAGCTTTACTGAAAGAACTAGGTTCACCAGCTGAATTATATACGAAAATCCCAACAGCTGATTTAGAAGATGACAAACCCTTAGTGGCAGATGAAGTAGCACTTGGGGTGACCTATGAAGATATTGATGATTATGTTGAAGGAAAAAAAGTATCGGATAAAGCCAAAGCAACAATTGAAGGCTGGTATAAAAAAACACAACACAAACGTCATATGCCAATTTCTATATTTGATGATTTTTGGAAATAAGGAATAAACGATTTAATTTGGTGCGAACCCCATGTGCCCATGAAATCACTGAGAGATCCGCACCAAAATAAGAGAGGAAAAAAGCTATATTCGGCTTTTTCCTCATTTTATTTTAATAATCATAAGGATTTACGTAGAAATTTAGTGATTATCAATGATTTATAATAGATAATCATCATTTTTCACA # Right flank : TCACTTTTTAATCCGAGTGTTGTAGGCATTATTCTATATGAATTAGATTTTGAAATTTTGGCATCGTATAAAAAATATCAAATGAATGAAGGAAGACTAAACTTTTAGCCTTTCTTTTTTTGCTAAATTTGGAGTAAAGCATCTTCATTTTGTGCAAATGGTTAAAAAAAGTGTAAACTTAAACTAGTTATCTGAAATAATCGATAAATTACTCTACAATTAAGTTAATTAAAGCAAGAAAAAGGTGAACGAAAATATGAAAAAAATGTTTAGGAAAAAAAGAGATATTGATAACGAAGAATTTCTTTCATCTGAAGAAAAAATACGAACAATCAATACTAATGATATTCGGATCCCAGATAACGTCGTAGGATTGTCTGATCAGAAAGTACAACAATTATACGCAGAAGGAAAATATAATAAAGAAGTTGAAGATTTATCTAGAACAACAAAACAAATCATCTTAGATAATTCGTTGACGTTATTCAACTTTATCAATC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCACTCTATTTGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.50%AT] # Reference repeat match prediction: F [matched GTCTCACTCTATTTGAGTGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 79669-80445 **** Predicted by CRISPRDetect 2.4 *** >NZ_KE136476.1 Enterococcus caccae ATCC BAA-1240 acOtn-supercont2.5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 79669 34 97.1 33 .................................T GGAAGCGCGTTTACAACCGTTTCGACGATTGGT 79736 34 97.1 34 .................................T CGCTGGTTTAAAAATGTTTAATTATTTAGAAAAT 79804 34 100.0 35 .................................. CCTTGGTATACTTTATCTATCAGCAAGTGGTCTGC 79873 34 100.0 32 .................................. AATTTAACAACTACGGTATCGTTAACTTTGAG 79939 34 97.1 33 .................................T ATTATTATGCTCACTGTTATTTTTATTATTACC 80006 34 100.0 33 .................................. AGTAACTATACAAACAAAACAAATTTTATAAAT 80073 34 100.0 34 .................................. AACAATTTTATAACGGTAGAAAAGACCTATAATA 80141 34 100.0 35 .................................. CGCTCAACACCAACAACCTATACAACTCTACAGCC 80210 34 97.1 33 .................................T ACCCTTTTAGCTAGACGTTTTTGGTCAAAATTA 80277 34 88.2 33 ..................TG........G....G CAGCAGTTCCGGCTTTCGTGCTTTTTGTTTTCG 80344 34 88.2 34 ....CA....T......................T GTGGGAGAGCTTTTTAAAACCAATAGCTGAATGG 80412 34 94.1 0 ................GA................ | ========== ====== ====== ====== ================================== =================================== ================== 12 34 96.6 34 GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Left flank : TTGTGGTTTAGCATAAATGAGAAAGTGGTGACACTGAATGTTGATATTAATAACCTACGATGTCGCAACAAGTTCAAAGAATGGTACTCGCCGTTTAAGGAAAGTAGCAAAGAAATGTCAAGATTATGGGCGACGTGTTCAGAATTCTGTTTTTGAGTGTATAGTTGATGCGACAGAATTGACGAAGCTGAAGAAAGAACTGAATGATTTAATTGATGAGGAAGTAGATAGTTTGCGCATTTATCGATTGGGTAATAATTATCAAAACAAAGTTGAACATATAGGTGCAAAAGAAAGCTTCGATATAGAGGGTCCTTTGATATTTTAGCATTAGTAATGTGGTGCGGACCTAAAGTGCACATGAAAACACTGAGGGACCCGCACCAATTTTTTACAATATTATGTTTTAAAACGTCTGTTTTCCTCATTGAAATTTAATTTTCATCGTTGTTTTTTTATGAAGTGATAACGATAGGTCATTTATTTTTGTCATTTTCACG # Right flank : AAGGATTACAACGCTGAAATTGTCTGTAAGACTGAGGACTAGCTATATATAAAGTTAATCTTAGATAAATGGGGACAGATCAAATGGAACTAAATCAAAGATAAAATACACAACAAATGAGAACGATTCTGTGTGTTGTGTAGAAAATTTTAAAGTTAGAGGAATTGGATTATATCACTGAAAAAGAAAAAAGCTCTTATAAAGAGCTTTTTTAGTTATAAGATAAAATCAAAAAAACGAAGAAAGTAAAAAAATAATAGCTAGAAAATAAATGAAAGATATTTTCATTTGTTTTTTATTTTAATCTTATTTGTTATCTTGTTATGTTAACAAATAAGAAAATATATATATAATTAAACCTACATGCCGATAATATAATGTTTTTTACGGTTTGTCAATACTGTTAGAAATAATTTTTTAAAAAATATTTATATCTTTAACTTTATATCTCGTTGTTTAATGGTGTTTTGGAACGGAATGTGTTCGCCGTCAAATCGCCG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.70,-5.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //