Array 1 57-1970 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXND010000002.1 Listeria monocytogenes strain 2014L-6657 NODE_2_length_559431_cov_43.8981_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 57 29 100.0 35 ............................. TTTCTAAAGTACTATCTATTCCGAAGTACACTGCG 121 29 100.0 37 ............................. TGTTGTTTGCGATTTATGGTTATCTTGTAGACCCGAC 187 29 100.0 35 ............................. ACAATTATCCCAATTACAGGTAACATTGCAGTGAC 251 29 100.0 35 ............................. AAAATAGAAAATGAATCAACTGCCGATATTTTCGC 315 29 100.0 38 ............................. CAAACTATGAAATACGCGGTTGATTTTGGCTTTAATGA 382 29 100.0 37 ............................. ATTATTACACCATTGATTATAAAGGCTAGTGATTTCA 448 29 100.0 37 ............................. GATATGTGAAATTTTCAAATCGATTTCTCGTTTTAAT 514 29 100.0 34 ............................. ATTTTCACTACTAGGATAGACGTTGATTCAATTG 577 29 100.0 36 ............................. TGACTTCCAAAAATAGCAGAGATTGCCGCCGCTTTT 642 29 100.0 36 ............................. AACCTTCGATTTCATTCACGATTATTACGAAAAAGA 707 29 100.0 34 ............................. GAAACTGAATTCACAACATTAAACGATAGAATAA 770 29 100.0 35 ............................. ATTATTTCTAGAGAGCGCTGGGAACAATACTTAAC 834 29 100.0 36 ............................. TTATTCTCCTTCCTTTGCCCCTCGAATTTTATAGTC 899 29 100.0 37 ............................. ATGGCTTAGAAACGTTCGGTTTCAATTTAGAAGATTT 965 29 100.0 36 ............................. CGCATAGTCGGAATAGTCCAGTTGTTGCTCAATAGA 1030 29 100.0 34 ............................. GTTACTTATAAAGCGTCTTTCGTTGCTTTAAAGG 1093 29 100.0 36 ............................. CCTTCTCCCTCTCGCCACGTATGCAAACTGCTTTCG 1158 29 100.0 37 ............................. AGTTATTCCTTTTAACAGAAATGCGTGGCACTGTGGT 1224 29 100.0 35 ............................. AACAGACTGATGAAAGAATTTTCTTTCGTTCCTGA 1288 29 100.0 36 ............................. GTCTTCGGGTCCGGAAGCACTTCCATGAATCTGATT 1353 29 100.0 36 ............................. CTAACATATTGGTCCAAATTCTTCGGAGCGATTACG 1418 29 100.0 36 ............................. ACAAGATACTTTTCGAGCAGACAATAATAGACGTCG 1483 29 100.0 36 ............................. AGCGTTTTGATAAGCTTTTCTTTGATGGTGTTAAAC 1548 29 100.0 37 ............................. GAATGCCTCGTTTTACGTACTATGTAGAAAAAGACCC 1614 29 100.0 37 ............................. TTTAATGCGTCAGGTAAACGCTTTTTTCGACACTCTT 1680 29 100.0 34 ............................. AATTTCTAATCCTAAATTATCCTTATTTTCCTCA 1743 29 100.0 37 ............................. CTCGCTCTAGCAATTGCTCATCAAAAATATAACTCCA 1809 29 100.0 36 ............................. TTCAGTAACATGTTCGCTGTAATCACGAATCTGAAA 1874 29 100.0 38 ............................. AAGTCCGAGCGTTTTCGCTAACGCAGCTGATACATCCG 1941 29 93.1 0 .......................A....C | C [1964] ========== ====== ====== ====== ============================= ====================================== ================== 30 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : ACTTATTATGAAATGTAAATGAAGATTTCGATACAAGATTCTACTTTGATGCTAGCG # Right flank : CTTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCTAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAATCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCCACACCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 904-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXND010000012.1 Listeria monocytogenes strain 2014L-6657 NODE_8_length_156392_cov_39.3734_ID_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 903 29 100.0 37 ............................. TTATAATAGGAAAGAAAGCGTGTGTGATGACGATATC 837 29 100.0 37 ............................. CAGATTCAGCAAAAGAAGATACTAAAGACACACCTGC 771 29 100.0 36 ............................. CCTGATGATGAAATACGAGCAAGAAAAATTCTTGGA 706 29 100.0 36 ............................. ATATATTGGGGTAGTCAAGTAAAAAATGAAAATAAT 641 29 100.0 35 ............................. ACTGGAAAAGGTTCCGAAAAAGAACGAGAAGCACT 577 29 100.0 37 ............................. CATTGATAACGAAAAACACATTGTGCAGCTTGAAAGC 511 29 100.0 38 ............................. AGGCCTGAAATTTTAGCATTGATATCTTTAGCGATTTC 444 29 100.0 35 ............................. AAAAGAGTTTAAAGATAACCTTGTTAAGTTCTATA 380 29 100.0 36 ............................. ATTCGACTTCCCTAACATCCTGCCAGGCGTGTTGGT 315 29 100.0 34 ............................. GTCGAAGGCGGCAATGAGTTGCTTGCCAGTTTAA 252 29 100.0 34 ............................. AGTAAGCAAAGCGGTAGATAAAGCGCTTTGCAAG 189 29 100.0 37 ............................. CGATTAATAAGTGAAGCAATTGAATATGACGATAGAA 123 29 100.0 34 ............................. AATTAACAGAAGCGGAAATTAAAGGTATGCCCGG 60 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ====================================== ================== 14 29 99.8 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTAAAGTTTTTAAGCGAAAATCTAAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCATAAAATAGAGCGG # Right flank : CGAAGATTTCGATACAAGATTCTACTTTGATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 18666-17732 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXND010000012.1 Listeria monocytogenes strain 2014L-6657 NODE_8_length_156392_cov_39.3734_ID_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 18665 29 100.0 37 ............................. ATTCTTTAATGACAAATGCAACATTCTCTGCTTTCGT 18599 29 100.0 35 ............................. GCTTCTAGCACGTCCTGCTGAGCCAGCATTTCCTC 18535 29 100.0 34 ............................. ATTGTTTTAGCAAGCTCTGCTTGGCTTATACCTC 18472 29 100.0 37 ............................. TACAGTGTTCGAGAATGGGCTAGACTGCAAGGGTTTC 18406 29 100.0 34 ............................. AATAAAAGCAGATGTTGTAAAGTGGTCTGATTTT 18343 29 100.0 36 ............................. TCATTAAACCAGTACGTAGTTTCCAATTCCATTTCT 18278 29 100.0 38 ............................. TTTTGAGCGAAAGGGTGAATAAAAATGACAGCAGAAAC 18211 29 100.0 36 ............................. TGGCTCAAATCCGCGTGACGAAAGTTCAGGTTTCAT 18146 29 100.0 35 ............................. TAAACCCGCAACCGGAAAGCCAGCGACTTTTATAC 18082 29 100.0 35 ............................. GCAGCTAAAATAGATATTAACATGAGTGAATCTGT 18018 29 100.0 36 ............................. TATCATCTGGAGTAATTAACTTTTCATAACTTGTAG 17953 29 100.0 35 ............................. TTTGTTTCGACAATATTAGACACAGAGTCAACGGG 17889 29 100.0 36 ............................. TAAAGATAAGCAAGTAGCATCTGCAGGTCGATTACT 17824 29 96.6 35 ..................A.......... GTTTTAGCCCGTGCTGTAAAAAACTGACTATCAGT 17760 29 75.9 0 A.....A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ====================================== ================== 15 29 98.2 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACTATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTTGTGATCTGTCGACCTTGAGTAGTGTGAAAAACACCGGGGATCGACAGAATGTTGTAAGTGGCTGGGGGAAGGGAAGTTTGGCGGTATTTGCTTGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : ACCCTTCATATGCCCCCCACCATCATCCATCAAACCAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTTCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGCTGTCATGTCCGCCACGTAAAAATAATGTGTATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCGCCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCACTA # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //