Array 1 1027373-1027588 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019782.1 Methylogaea oryzae strain E10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1027373 29 93.1 32 ..A....T..................... CCGGCGGTTTGGCTGGTGCAATTCGTCGCCGA 1027434 29 100.0 32 ............................. ACGATCTCGTCCGGCAGCTGTGCGGCGGATTC 1027495 29 96.6 36 ...............A............. ATGTACGGCTCGATCACCGTGATGGGCTGGCTGGTT 1027560 29 82.8 0 .........G....C.........CC..C | ========== ====== ====== ====== ============================= ==================================== ================== 4 29 93.1 34 GTGTTCCCCACGCTTGTGGGGATGAACCG # Left flank : CCGGCGCCAGTTTCAAGAGTTCTTCCAAAGTGCGCACGCCGGCCATGCCGTTGCCCACCAGTACCAATTTCTGTTTCATCGCCATCACCCTGTCGGAAAGCGTCGGTTTGTATCGGCTTCGTTCGGGCGATAAAAAACGCCCGCCACAGCCGTTGCTGACTGCGAAGGACGCCGTTGTCCGCTAAGCGCGCCACCGTTGGCGCACCGGTTTGGTTGGTTACCAGCACAGGACGTGCCAGGGCTGCAAACGCCGCATTTAGAGGGGGCGCGGCGCGGCGCGGCGAAGGGGCGGCACCAAAATGGCGCGCGGCGCACAAAGCCAAGGCATGCTTAGGGAGTTCGGCGCGCGGGCGCATACTGTTCGAAGCTTGCGCCGATCGGCGGCGGCGCTCGTTAACAAACCGGAAATCGGCCGTCGGCCCCGGCCTGCGGAGGCCGGTTCGCGCGGCGGAATTGTTCTCGCTGAATTTTGTTATGAAGAACAATCGGTTACGATTGGT # Right flank : CCTGACCCTCTCCACCGAAAACGCGGACCTGTGTTTCCAGCCTCGCGGGAGTAAGGCCACTCGATAGTCCGGCGCGTCGGCCGCTTCGGTGCGTTTAGTGGTTCGCCAAACACGCCAGCAACGCGCCCAGCAGTGCCAGCGACAGCACTTGCCAGAAGCGCAGCGGGTTGCGTTCGTACAGGGAGCGGCGGCGCAGCGGGGTGGGGGCGCCGTTGGTGGCGCCGTTTTCCAGGTCGTAGGCCAGTTCCATGGCGTCGGCATAGCGTTCCTTGGGGTTGACCGCCACGGCGCGGGCCAGGGCGGCGTCCAGCCAGGCGGGCAGGTCCGGGCGGTGGTTGGACAGGGGGCGCGGGCGGTGGAAGCGGGGGGTGGTGAAGGGTTCGATTTCGCCGTAGGGGTAGGCGCCGCCGCTGAACGTGCGGTACAGGGTGACCCCTAAGGCGAACACGTCGCTGGCGACGCTGCCGCGTTCGCCTTGCCACAGTTCCGGCGCCATGTAG # Questionable array : NO Score: 3.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGCTTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2645257-2651262 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP019782.1 Methylogaea oryzae strain E10 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2645257 28 100.0 33 ............................ GAAATCGCGCGCCGTGTCGAAATCCTCGTCTTC 2645318 28 100.0 33 ............................ CTTGGATATTGTTGCCAACATGCAGCCCGCAAA 2645379 28 100.0 33 ............................ TGCGGACAGTAGCAAATGATGATGGCACATATT 2645440 28 100.0 33 ............................ CCTTGTTTCTCCCTCCGCTGACGTGGTGATTGC 2645501 28 100.0 33 ............................ CTTTAGCCGTTAGCCTCCCCGTGAACTCATGGA 2645562 28 100.0 33 ............................ TTCAAACGCAGCAAGCACAATCGAAGAGTGGGT 2645623 28 100.0 33 ............................ TTTCGCATCCTCTACGGCTTTTTTGTCGTCGGG 2645684 28 100.0 33 ............................ CGCCCAGGCCAAATATGCCAGCAGGCCGGATGG 2645745 28 100.0 33 ............................ TGCGGCTGGTTGATCCCGACATGGCCGAGGCGA 2645806 28 100.0 33 ............................ TGGGCGCGGCTGCTGGATGCGCAGTCGCGGGGT 2645867 28 100.0 33 ............................ CGCTGGCGCGGCGACGGGCTTATTTGTACGGGG 2645928 28 100.0 33 ............................ CAGCCATTGAAATTCTCCTAGTGATTAAGCCGC 2645989 28 100.0 33 ............................ CTGGTTCTTCCTGGCTTTGAGTTGGCAGAAGAG 2646050 28 100.0 33 ............................ CGATTATGACGAATTACAAAAATTCGTTGATGA 2646111 28 100.0 33 ............................ CTCATTTTTTAGCCCGCGCGCAGACATGGTTTT 2646172 28 100.0 33 ............................ CCCAGTATGCCTGCGTGGCGCTGGACTGCTTCG 2646233 28 100.0 33 ............................ CAACGCCAACCAATTAACAATCACGACTGGGAC 2646294 28 100.0 33 ............................ CATCAACGTAACGGTGCCATCTGCTGCGCAGGG 2646355 28 100.0 33 ............................ TTACACAACATGTAATGATTGGGTAATCGTCGG 2646416 28 100.0 33 ............................ CGGCGTTAGGGTCGCCGGCCTGAAGCAACAACC 2646477 28 100.0 33 ............................ TATCGCGCAGCGCCTGGCGGTACGTCTCCCATA 2646538 28 100.0 33 ............................ CTGTAAAGCGGCTGGCCTGGCACTGGCGGCAAC 2646599 28 100.0 33 ............................ TGCGATCAGCTCGCCCATTTATGCGTCCTCGGT 2646660 28 100.0 33 ............................ GTTTCTTGCTAGCTGTTTAAACCCGGCTTCAAC 2646721 28 100.0 33 ............................ CGGAGCCATCAGGTAGCCGCTTAACGTCGTTTC 2646782 28 100.0 33 ............................ CCTATTGCCAGGGCGAGGACGGCGCGAGGCAAT 2646843 28 100.0 33 ............................ CCACAAGCCGCGCCTGAAATCGGTGGATGCGTC 2646904 28 100.0 33 ............................ GCGGCATGACCCAGCGCGCATACGAGTGGTTGC 2646965 28 100.0 33 ............................ CTTATCGGAAGTTCCAAAAACTATTATCCTGAT 2647026 28 100.0 33 ............................ CAACCGCGAGCTGTGGCGCACGCCCATCGCCGA 2647087 28 100.0 33 ............................ CCTGCGCCGATACGCCGTCAATCGTCTGCGTTC 2647148 28 100.0 33 ............................ GCTTTTTGCCGCCCGCCACCCATTCGCGCAGGG 2647209 28 100.0 33 ............................ TCTATGGCAAAGACGCCGGCCCGCTGGGGTTCG 2647270 28 100.0 33 ............................ CGTGCCCTGGCGAATGCTGGAGAAATTCACGCC 2647331 28 100.0 33 ............................ CTGGCAAACAACTGGGCGGCATCGACCATCTGC 2647392 28 100.0 33 ............................ CGACTACGTGCGGGCGTTCATGCGCCTGGTGCG 2647453 28 100.0 33 ............................ TTAGCCATGGTTATGCGGTTCCGTGGTTGTATG 2647514 28 100.0 33 ............................ CGTGTATTCGTTAGCGGCATCGTCCACAGCGTT 2647575 28 100.0 33 ............................ TTTACCGCCCCAGTTACTCGGTCATAAAACTCT 2647636 28 100.0 33 ............................ CATGGGGGGAAATGGCGGAACGGCCGGCCAGCT 2647697 28 100.0 33 ............................ TCCGAGTTCTTTGCCGATCTTGCGCAAAAGTTC 2647758 28 100.0 33 ............................ CAGAATCAAAGAGTTATGTTGCCAGAAAGGAAT 2647819 28 100.0 33 ............................ TTCAGCCAACGCCTGCGCCGCCTTAGCCTTGTC 2647880 28 100.0 32 ............................ TCGTCGGGCGCAGGCCTGCAACGGTTCGCGCC 2647940 28 100.0 33 ............................ CCGTTTTCGTGGAAATCGCCGAGGACATGAAGG 2648001 28 100.0 33 ............................ CGCTTTTTGTGTGGTGAGCAAATCAAACGGAAA 2648062 28 100.0 33 ............................ CGCCACCGTTTTTCTATCCGCCACGACAATAAT 2648123 28 100.0 33 ............................ CACTGTAGACGCTAGAGCATGATGCTCACCGCC 2648184 28 100.0 33 ............................ TTGGCTTCCACGCCTGGTTTTTGGCCGGTTTGT 2648245 28 100.0 33 ............................ TCAAATCAAACACAAGGCATGCTGCCTCTCGTC 2648306 28 100.0 33 ............................ CTTGTTTGTTTTATCTGACCCATCTGACCCAAA 2648367 28 100.0 33 ............................ TTATCGTAAAATCCTGGTTCCATCGTTAGCCTA 2648428 28 100.0 33 ............................ TGGCCCACCGCCGCCCCAGTGTCCTATAGCACT 2648489 28 100.0 33 ............................ ATAACAAGGTGGAAACCCCCGGCAATCCCACGG 2648550 28 100.0 33 ............................ GTTCCAAAGCCGAGACCTGCGCCGCACATGGAA 2648611 28 100.0 33 ............................ CACGGAGCCATCGGGTAGCCGCTTGACGTGGTT 2648672 28 100.0 33 ............................ CGATCCGGGGTTTTTTGTGGGCGCTTACTTAGG 2648733 28 100.0 33 ............................ CAGATCGCCGATCAAAAACCGCTGCACTTCGCC 2648794 28 100.0 33 ............................ CTGCTGTGCAAGATCGGCAAGGGACTTGGGGCG 2648855 28 100.0 33 ............................ TTGGACTCGATGATATCCGCGACAAATCGTTTT 2648916 28 100.0 33 ............................ CTTGCGCGGTATGGTCAGGATTACGCTAGCAAC 2648977 28 100.0 33 ............................ ATCACTAAGGAAGAGCAAGCCAGGGCACGAGAC 2649038 28 100.0 33 ............................ CTCGAGCCGCTTCACAAGCATCCGCGTAATCTG 2649099 28 100.0 33 ............................ CTTCCAGGAAGTCGGTGTTGATGAAATACGCAT 2649160 28 100.0 33 ............................ CATCAAATCCAGAATGATGGCCGCAATGCGCTG 2649221 28 100.0 34 ............................ CCTATAAAAATAACGTCGTCACACGCACAGGCCG 2649283 28 100.0 33 ............................ CGCAATATCCGAGTTCCGCTCCAAAACGGCAGC 2649344 28 100.0 33 ............................ CGGATAGGCAGCGCTTGGCTGGGTTTTAAACAC 2649405 28 100.0 33 ............................ TGTAATATCCACAATGGGGGCATTGCTTATAAA 2649466 28 100.0 33 ............................ TTCCGCTGTCTTGTTCAAGGCCTCCGGGTGCAA 2649527 28 100.0 33 ............................ CTTACTCCGAGTCCGATACTCCAAGATTCGATC 2649588 28 100.0 33 ............................ TACGTTCTTTGGGTGGGGCAGCACTCGTGACAT 2649649 28 100.0 33 ............................ CCGCGCCGACGTTTTGCCATCGGCCTTTCTTGT 2649710 28 100.0 33 ............................ CGCCGGCCATTTTTGCATGCGCCGACGTTTTGG 2649771 28 100.0 33 ............................ CCATGTTAAACCCCCAACATCTGAGCGATGAAC 2649832 28 100.0 33 ............................ TTAAATAGAAAAAGCCCAATGATGTCACGGGGC 2649893 28 100.0 33 ............................ CGATAACCCCAGCAGCGCCTCGTCCTCCGCGTC 2649954 28 100.0 33 ............................ CGCCAGCCCCATCCCGCCGACACAGCGACAGCA 2650015 28 100.0 33 ............................ CGTCATGTTGCGTCACGCCCCCGGCGGCGGTAT 2650076 28 100.0 33 ............................ TTAATCGCCGCATGCACGAACACTTCGGCCTTC 2650137 28 100.0 33 ............................ CCTCTACGGCCTGGGTTCGGTGGATTTAACGGC 2650198 28 100.0 33 ............................ CAACGCAACGCCCGCAGCTAGCGTAGTGAAAAA 2650259 28 100.0 33 ............................ TGCCCATTTCCACGCATGGGTGGCGCTGCTTTC 2650320 28 100.0 33 ............................ TGAGTCCGCCTACCGCTGGCCTGACCGGTTGGA 2650381 28 100.0 33 ............................ TTAGCCATGGTTATGCGGTTCCGTGGTTGTATG 2650442 28 100.0 33 ............................ CGCATGCAAACAACGCTAAAAGAATTGGGCGAA 2650503 28 100.0 33 ............................ CGCTTTGGGGTCGCGAATATCCGCGCGGGAGAC 2650564 28 100.0 33 ............................ CGGCTTGATCGACCAGGAAACGCCGCTGGTGCT 2650625 28 100.0 33 ............................ CCGAAGACGGCGGAGTGTCAGGATCACTCCAGC 2650686 28 100.0 33 ............................ TGGGGGCGGCCGATGAATCCCCGGCGGAGCAAA 2650747 28 100.0 33 ............................ CGACGACGAACGGGAACAACTTGACGATTTGTG 2650808 28 100.0 33 ............................ TTGCGGTGGGAGAAAATACCGTTATCCCGCCAC 2650869 28 100.0 33 ............................ CTGGTTTCCCGACACAAAAAAGGCCGCGCCGTC 2650930 28 100.0 33 ............................ CAATCCTCCGCATTTCTTCGATGTCATTATCAT 2650991 28 100.0 33 ............................ TCCGCCGGGCGTATGAGGCCCTGCAACCGCCAG 2651052 28 100.0 33 ............................ TCGGTATTGCTGTCCGAAGACGCCACCCTGTTC 2651113 28 100.0 33 ............................ CTAAAGTAGCCCATGCCAACTGCGCCTCTTCGC 2651174 28 100.0 33 ............................ CATCCGCAGCTGGTTGACGTAGTCGGGCGGGAA 2651235 28 92.9 0 ......................C..G.. | ========== ====== ====== ====== ============================ ================================== ================== 99 28 99.9 33 GTTTCCCCCGCACACGCGGGGATCGACC # Left flank : TGTCGCCAAGCGCGTCCAGGACAATCCGGAACTGCTGTTGGAACGGGAACTGCGCAAGGAAGCCGCGCGGCTGTTTCGCAAGCAGCAGGTCATCCCCAAAATGATCGACCGCACCAAGGAGCTGCTCCATGTCGATGACCGTGGTGGTAACCCGTAACGTCGCGACACGGGTGCGGGGATTCCTCGCCTCCTCCATGCTGGAGCTGGCGCCCGGCGTCTACAGCGCGCCGTATTTATCGCCCGCCGTGCGGGAACGTATCTGGGCGGTGCTGGACGATTGGTTCGTGGCGGAACAGGAGGCTTCCGTCGTCATGGTCTGGCACGACGCCAAAATGCCCGGCGGACAAAATGTGCGCGTACTGGGGTTGCCGCCGGTGGAATTGCTGGAACTGGACGGCCTGATCGTCACCCGACGGCATTGAACGCCCAGCGATGCCCCCCGTTAGCCAAAGGGCGTGTTTTTTAACAATTTGTTATGATTCATTGCGTTAGCGATTAGG # Right flank : CTTTCGCGCGCAGAGCGCGCTCCTACAGAGGGAGGTTTTTGCCGCGCGGCGGGTTGGGGGACATAAGCCTTGCGGGGCGCGGGCCGGATCCGGTTTCCTAACCGTAATCAGGAGAAAGGTTCCGCCCTCTTTGTTGGGTTACGCTGCGCTAACCCAGCTAAATTACGTGCGAACCGGCGCGGACGAAAATGCGCGTTTATCGGAAACGGGCCGCCCCTTAACGGCCCCTATACTGCCGGAGCATCAGGGATCGTGGAGCAACCCGCCACGCTGTAGACAAAGCCTCTCGTCGGCGTTTTTCCAGCAAAAGCCGGCGCAAGCGCTTTCCCGCTAGGCAGCGGGCGTAGCCAGGCGCCCGTCCTCCATGTGCCACACCGTATCCATGCGCGCCGCCAGGCGGGGATCGTGGGTGACCACCAGGAAGCTGGTTTCCAGGGTCTGGTTCAGTTCCACCATCAGGTCGTACACCTGCTCGGCGTTCTTGCTGTCCAGGTTGCCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCCGCACACGCGGGGATCGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //