Array 1 11371-16021 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000009.1 Lysinibacillus macroides strain DSM 54 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 11371 33 100.0 34 ................................. TCGTTGGTCTGTATGATTTAATGCAGTCATGATG 11438 33 100.0 33 ................................. CCCTTTATCAACAATCATTTCAAAACGCGTTGC 11504 33 100.0 33 ................................. AATTCGGTAACGCCATTCGCCGTCTGACTGACG 11570 33 100.0 34 ................................. AAATAACGCTAATCATTTATTTAAAGGAAAACAA 11637 33 100.0 36 ................................. ACTTTGTTTGGCAATTAATCTCTTTGCTAAGCTATC 11706 33 100.0 34 ................................. ATTTAAATATATTAGTGATATTGATAAAGGTTTT 11773 33 100.0 36 ................................. CAGTTAATCTTCATCCACGATTCCCTCCATTTTATT 11842 33 100.0 33 ................................. TGATAATTTGATTGACGGTCTTTTCTGCCCATG 11908 33 100.0 33 ................................. ACATTTGTAGTTACAATTGAGACAATTCAAGGC 11974 33 100.0 35 ................................. GATTTGAGACTGCCATCCTTTAAAATGAGTAATTT 12042 33 100.0 33 ................................. TAATTCGCTTCAAAGCTTGTCATTACTGGAATG 12108 33 100.0 34 ................................. AGAATTAAATAACTGCATCATTCTCACAATATCA 12175 33 100.0 34 ................................. AGCAGCACGTCTAAGCGCCTGTCTCATTTGGTCA 12242 33 100.0 33 ................................. TTGGTCTTGGAACCTAAAGTCAGTCGATTCTGG 12308 33 100.0 34 ................................. AAGCAACCCTCAATCGCCCAATTGAGTATTCCGC 12375 33 100.0 34 ................................. CATTTTATTTCCTGCTCCGTCGTAAACTGTTAAA 12442 33 100.0 37 ................................. CAAAGCATTTTCTTTGTTCCAGGACAAGGATCTGGAC 12512 33 100.0 33 ................................. ATATAAATCAAATATACGTTGTACCTTCTTTGC 12578 33 100.0 33 ................................. TTAAAAATACCGAAACCAAAAAGCCTTGCCTTT 12644 33 100.0 34 ................................. TCATGATTTTTGAGTGGCATACGATTGGCATTTA 12711 33 100.0 35 ................................. AAAAAAGATGACCGTGAGGGTGTAGAAAATGCAAG 12779 33 100.0 34 ................................. AACGCAAGTGCATCGGAAAAAGTTAACAATAGTT 12846 33 100.0 34 ................................. AGCAATTATATTAGTATACAATGCCCTATGTGTA 12913 33 100.0 34 ................................. AACTGTTGCAGTACGCGTAGAAAGTGCCGATAAT 12980 33 100.0 34 ................................. TCATTGGTAGGACTTTACGTGATATGCCAAACAC 13047 33 100.0 33 ................................. CATCAAGCAGCCTATAAATACTTTCGCCCTAAA 13113 33 100.0 33 ................................. ACTACCAAGCATATAATTAATTATAAGACATCT 13179 33 100.0 33 ................................. CACTAAAATGCTGCTGCAATGATCGCTACAAAA 13245 33 100.0 34 ................................. CTATTTTGATAAAGTTTTGGTTTATCTATTAATT 13312 33 100.0 33 ................................. ACGGCTGAAGATTTGCTTACGGCTGGGGTTGCT 13378 33 100.0 33 ................................. TTGAACATCATTTTGTAGTTGTAGATACAACGC 13444 33 100.0 34 ................................. TTTTAGTCGTGGTAAAAACATGTGGTGTGCATCA 13511 33 100.0 34 ................................. GGCATAGCAGACGATGGTGAGGCAATAGGCATAG 13578 33 100.0 34 ................................. ACATATACAACTCCTTTTGTTGTATCAAATCTTT 13645 33 100.0 33 ................................. GTAATAACGGAACAAATAGTGAATTGCGATACA 13711 33 100.0 35 ................................. TTAAAAAAAGTTTGGGATACTGTTAAAAGCATATT 13779 33 100.0 33 ................................. AGAGACTTGAAGAAAATATCGATGTAAAAGTAT 13845 33 100.0 33 ................................. AGAGACTTGAAGAAAATATCGATGTAAAAGTAT 13911 33 100.0 33 ................................. TATATACATACTCTTTGTTAGATTCTAAGTTAG 13977 33 100.0 35 ................................. TTATTTCGATATGTACTGCATTGAACGTGCTTTCA 14045 33 100.0 34 ................................. AAAATCCACGGAAAGCTTGTCCTTTCCAGCTTGT 14112 33 100.0 34 ................................. AGACAAAATCAAATCCCACTCAAATTCATCGCCC 14179 33 100.0 33 ................................. TTCTTTTTCAAGTTAGTAAGAATCATTCCCAGT 14245 33 100.0 35 ................................. AGCCTCAAACATTAAATCTTCGTAAGGCGGCACTT 14313 33 100.0 33 ................................. GATATAGTCTTTTAATTGTGCATCGTAGATGGC 14379 33 100.0 34 ................................. AATTTCAAACGTCAGTCCATCAGTTAGTTGAGTG 14446 33 100.0 33 ................................. CTGAGAGTTTTAATGATGTTGATGACGTTAAAT 14512 33 100.0 34 ................................. ACCGAAAGAGGTGAATAAATAGCAATGGAAACAG 14579 33 100.0 33 ................................. TTCGCTAATTTCAACTGTTTCTTTGATTTCCTC 14645 33 100.0 34 ................................. CCCTTTGCTCGAGATCTTGATTGAGCAGGACCAA 14712 33 100.0 36 ................................. AGTTTTTAGAGTCGCGTAGTCAGACGAGTGGTCAAC 14781 33 100.0 33 ................................. CAATTACATCATCATCCAATACTACAACGTCTC 14847 33 100.0 33 ................................. CAATTACATCATCATCCAATACTACAACGTCTC 14913 33 100.0 36 ................................. AGTTTTTAGAGTCGCGTAGTCAGACGAGTGGTCAAC 14982 33 100.0 33 ................................. CAATTACATCATCATCCAATACTACAACTTCTC 15048 33 100.0 33 ................................. TGCAAGTGTCGAGTGGGAGTCTCATGTAGGTAA 15114 33 100.0 35 ................................. TAGCAGAATTTATCGCATTAGAGAAAGATATGAAT 15182 33 100.0 35 ................................. TCTGAACACATCGAACTCGTTATAAGCCCAAACTA 15250 33 100.0 36 ................................. ACTTTGCAAAATAAGATATGGAGTAACGATGATGAG 15319 33 100.0 34 ................................. ACCTCATTGCTAAATGTCTAAAATCTTACGAATG 15386 33 100.0 33 ................................. AGCCAAATCTAAAGGATCACCTTCGTCACCAGC 15452 33 100.0 35 ................................. GTTATTGTCCCAGGAAACACATCACAAAGTGGCGT 15520 33 100.0 34 ................................. TTTGAAGGGGGAATCTGGAAAAATTGTAATAATC 15587 33 100.0 34 ................................. ATTTACCAAATTACTCTTTTGTTTACCATCAACA 15654 33 100.0 35 ................................. AAGAGAATCCAGAAATCTACGAATATCGCAAATAT 15722 33 100.0 33 ................................. CACCAGGTCGATTGCCTGTGCCTCCTGTCAATA 15788 33 100.0 34 ................................. TGATTTGTACCACAGCGAGTCAGTTTTTGACACG 15855 33 100.0 33 ................................. ACTAAAAATTTTAGACCAATCCATGTTAATAGC 15921 33 100.0 35 ................................. TTTTTATCTCACAGTCTGTTAATGCTATACTTAGC 15989 33 72.7 0 AC........A...A....A.AC.TG....... | ========== ====== ====== ====== ================================= ===================================== ================== 70 33 99.6 34 GTCTCTCTTTGTATGAAGAGAGTGGATTGAAAT # Left flank : TCGCCACAGAGGCAATGGAAGAAGAAGCCAAGCAATTAGGAGCAGATGCAATTGTAGGCATACGCTATGCAACATCCTCTGTCATGGATGGAACTTCAGAAGTACTCGTGTATGGCACAGCCGTAAGATTAAAATAGTGATAAGCCTTCCAAAGACTGCGAGAAATCAGCATTTAAAATAGATTTCTCGCGTTTTTTTGTCAAGAAAATATAGAAAATCCATGATGAGAAGCTTATTTTTTGCAGCTATTTGAAAGGACTTTTTGTTAAAATTTTTAAAGATATAATAGTATTTACGGTGATGTCGATTCTATAAGTATATTTATTTTTTTGAACGAGCTAGTGCGAATGTAAAGCAAACATGATTCGCTAGGGAGATTCGCACCTATTATTCAACCAATTTTCCATTGAAATGGAAAGGGGCTTGGGTTAATATGACCTTATAGATTTATTTTTTTATGAAAATCAATTATAAATATCATTTTTATATTGTTTTTCACT # Right flank : TTGGACTTACTTGTGATAGAAGATCTATTGTTTTTTTATCTGGATCATACTGAAAAGTAGACGATGAAATTTAAAAATAAAAGTTTAAAAGCGTAAGAAATCAGCCATTTAAATGGATTTCTCACGCTTTTTACTTTGTCCCAACCCGTTATTCTTTAGTGAAAAAGCTGCTCTATTGCTGTTAAATCGAAGTCAGAGAGAAGCTTATAATCCTTTAGATAGCTTTCTTCATATAAATACACCAATAAATGCTTGGTATCATCCAAACGTAAGCCTATTTCACGGTCATCATTCATCAACAATGTTAGCCAATAAGCTTCCTGAAAATCCGACTTCGCAAAATACACCGTAAGCCCGTAATCAAATAACGCATATAAAACACCAGGCACCTCCGGTACGATAAACGTATCAATTAAAGGAGGTGCCCTATTTATGTCCACAAACAAATTAACCATAGTTCCCGTCAAACTTGATCCTCTTTCAACGGAAAGTTCTTCGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTTTGTATGAAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [88.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 1 1258664-1259364 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000005.1 Lysinibacillus macroides strain DSM 54 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1258664 33 100.0 37 ................................. CCTTTGTTAGTTGGAAATGATTTTCAGGAAGCGCAAG 1258734 33 100.0 33 ................................. AGACCATCCAGCAAATTGTCAATATTAAACGAC 1258800 33 100.0 33 ................................. ACATTTATAGTTACAATTGAGACAATTCAAGGT 1258866 33 100.0 34 ................................. AGCATATTGCAGGCATGTCAAACTACGTTGACTT 1258933 33 100.0 34 ................................. CGCTATCCTACTTTTAATGAATGGAAAACAGGAA 1259000 33 100.0 34 ................................. CGCTATCCTACTTTTAATGAATGGAAAACAGGAA 1259067 33 100.0 34 ................................. CGCTATCCTACTTTTAATGAATGGAAAACAGGAA 1259134 33 100.0 34 ................................. AGCATAGTGCAGGCATGTCAAACTACGTTGACTT 1259201 33 100.0 34 ................................. ACGGAGTCGCTTATTTTCATGTTGTGAAGCTAAT 1259268 33 90.9 32 ...................A.....GG...... ACATACAAGCGTATTTAAAGAACAATGTCAGT 1259333 32 72.7 0 ..AG......A.-.C..A.A...A....A.... | ========== ====== ====== ====== ================================= ===================================== ================== 11 33 96.7 34 GTCTCTCTTTGTATAAAGAGAGTGGATTGAAAT # Left flank : GAGATTCCACCAATCATATGTCTTACAACAATGCCCTATTGATTTGAAGCCCACGAGGATTTCTTGTTTGCTATGTATAAATTGCTTCCAATCCAACTCAAGCTTATAGGTTTGCCTTAATATGTTGGATTGAACAATGCCTAGAAGCTTGATAAATTTTTTCTCTAACTATAGGTTTCTGTTAATAACGGAAAGGAAAGTATGCTTTATCTATCAAATATATAAAAGTAGAGGGATTGGGAGAGGTTTTAAGATAGGCGTCAAAAATGAACAAAATCCGCTATGTGAAATAGTTGGTGTTATCTGGACTTTATAAGCGCAAGTATTTTTTAAACAACAAGTGCGAATGGGAAGCAAACATGATTATCCAAGGAGATTCGCACCTATAAACCAACCAATTTTCCATTGAAATGGAAGGGGAATTAGGTTAATATAACCTTAGAGATTTATTTTTTTTTGTGAAAATCAATTATAAATATCATTTTTATATTGTTTTTCGC # Right flank : TATATATTCAAAGGCCAAGCCCGAAAGATTTTACTATTTGTAGAATTTTTCGGGCTTTTTGTGATCTCTTTTTCTGCCTTTTTCATTTAAGTGGAACCCCATACGACATACTGTAGTCTTATACTATAAAATGTTTTTCAATATAAAATTATCGATAAACAATAAAAATGTCTGTATAGGAAGAAGTAAATATTTTTGAGAGTAACTTTAATGATCCTTGCTTTGCCGATGCTAGTAACACGTATTCCAAAAATTGGAGGTAGAGGTCTGTGCGGCATTGAAGCGATTAACCTAGCTTGATTACTAGGGTGCAATCTTCTATAAATCCATAGGAGCGTTGAAAAAATCAAGGGGAATGCTTTTATTATTACAGACTTATACGCAGCAAGAATATGTTGGCGTAATTGGCTTAATGTTAGGTGATGTGGTACTTGTTGTTAGTGTCTTTGCAGCAGGAACTGTCAAGAGGAAAATAAGAAACAATTTAAAAATTTGGGGTG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTTTGTATAAAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.80,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA // Array 2 1269298-1276717 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000005.1 Lysinibacillus macroides strain DSM 54 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================================================== ================== 1269298 33 100.0 33 ................................. AACTTTTTTGTCATATCTACCCATTACCAAGCA 1269364 33 100.0 33 ................................. TAACACATCTACAACAATACTGTTGCCTGCTTG 1269430 33 100.0 34 ................................. ATTTGCATTATTTTCATTTTCCACCATTTTTCAC 1269497 33 100.0 34 ................................. TGCGTGCTCCACCCAGGGCGTTTCGCACAAGACC 1269564 33 100.0 34 ................................. CCCCTCTCTCCTCTTAAATTTTAAAGGCTACCCA 1269631 33 100.0 33 ................................. TAAAAGATTTAGTGGAAGAGAGCGAAAATGCAG 1269697 33 100.0 36 ................................. ATTGCCTCAAAACCTTAACTGCTGTACAATTAAATC 1269766 33 100.0 34 ................................. TCCCAAATGACAACTCGTGGTTTCCAAACGCCTA 1269833 33 100.0 35 ................................. AAGTGATTCAATCCTCTTTAACGCACCTGTTAACG 1269901 33 100.0 34 ................................. TTACTCAAAGACCATTTGACTATTGCAAGTATCA 1269968 33 100.0 33 ................................. CAAAATGCCGAAAATACTTTTTTACTGATTTCT 1270034 33 100.0 35 ................................. GCCATCATAGGCAATTTTACGTCACCGTCAGGGTC 1270102 33 100.0 35 ................................. ACGTGCATCTAGCACCTCATAGCTATTTGTATAGC 1270170 33 100.0 34 ................................. GCGTAACTCGGCTAGTAAACCTTCATCAATCGCT 1270237 33 100.0 34 ................................. ATCATCACGAACTGCCATATACACATTTAGTTTT 1270304 33 100.0 34 ................................. ACATTTGTAGTTACAATTGAGACAATTCAAGGCA 1270371 33 100.0 35 ................................. ATCCATGTACGTATGTATTATTTAACAAACTTGCA 1270439 33 100.0 33 ................................. ACACTATCCATATCATCTGATGCAGTATCAACA 1270505 33 100.0 33 ................................. TAGATGAAGCATAGCAATAAATAGTTTATCATC 1270571 33 100.0 34 ................................. CGTATAAACATGTACCTACTAACAAAGGTAGTCC 1270638 33 100.0 33 ................................. TTATTGCATAATTATACTGTATATACAATTTTC 1270704 33 100.0 33 ................................. TGTATGCCTTAATATAAAGACAAGCCAAACAAC 1270770 33 100.0 36 ................................. TCAGCAGATTCGAGATGAAAAAAAGGTTTATCTAAC 1270839 33 100.0 33 ................................. TTAAAAATACCGAAACCAAAAAGCCTTGCCTTT 1270905 33 100.0 33 ................................. TATTTCCAAAAGCAAGTACCGATCCGCAAGGAA 1270971 33 100.0 62 ................................. ACTCTCATTATGAGAGTGTGGATTGAAATACTCTCATTATGAGAGTGTGGATTGAAATAATT 1271066 33 100.0 34 ................................. ACGGCTGAAGATTTGCTTACGGCTGGGGTTGCTT 1271133 33 100.0 34 ................................. TTGAACGCTTCCATTTTTTGCAACTTCCACTGTT 1271200 33 100.0 33 ................................. ATAGTCACCACTACCATTACACATGGGACATTC 1271266 33 100.0 34 ................................. TTAAAAATACCGAAACCAAAAAGCCTTGCCTTTT 1271333 33 100.0 33 ................................. TAATAATATTGAATTATATGAATAGTTGCAATA 1271399 33 100.0 34 ................................. ACATTATCCATATCATCTGACACAACTGAACATG 1271466 33 100.0 33 ................................. ACATGCAGTATCAACAATACCAATACCAATACC 1271532 33 100.0 33 ................................. AACGCAAGTGCATCGGAAAAAGTTAACAATAGT 1271598 33 100.0 36 ................................. TGCACAACGCCTTTTTTACCAATCAAATGACTATAA 1271667 33 100.0 32 ................................. CTCTCACCTCCTTTATCCATATATTACTATAA 1271732 33 100.0 32 ................................. CTCTCACCTCCTTTATCCATATATTACTATAA 1271797 33 100.0 32 ................................. CTCTCACCTCCTTTATCCATATATTACTATAA 1271862 33 100.0 32 ................................. CTCTCACCTCCTTTATCCATATATTACTATAA 1271927 33 100.0 32 ................................. CTCTCACCTCCTTTATCCATATATTACTATAA 1271992 33 100.0 32 ................................. ATCTCACCTCCTTTATCCATATATTACTATAA 1272057 33 100.0 36 ................................. AAAAAAACGAAAGGAGAATCGATATGGCAAGTTATA 1272126 33 100.0 34 ................................. ACACCGTTTTTTAGCGTGTAAATTGGTTGTAATT 1272193 33 100.0 35 ................................. GTTTGCCCACTCTTCCCATGAAATATTACCATCAA 1272261 33 100.0 34 ................................. TATATTTTTGTTTTTGATTTCACCAACACCACAT 1272328 33 100.0 33 ................................. CAATGAAGCACCAAACAAGACACCGAACAAACG 1272394 33 100.0 34 ................................. TGTTAAAAATGTATCTAATGGCATACTGTTTTTT 1272461 33 100.0 33 ................................. ATTTGTGGTAATATTTGGAATAACAGAAAAACA 1272527 33 100.0 35 ................................. AACGTTATCATGCTCAAAAGTAACCAACAAAATAT 1272595 33 100.0 34 ................................. TACTTGCCCACCACCTTTTGCCCTATAACAATAT 1272662 33 100.0 34 ................................. AGCATATTGCAGGCATGTCAAACTACGTTGACTT 1272729 33 100.0 34 ................................. AGCATATTGCAGGCATGTCAAACTACGTTGACTT 1272796 33 100.0 34 ................................. TATTGATCTCAGACGTTCTCAACTAGTTATTAAT 1272863 33 100.0 32 ................................. AGATAGTGTAGAATGAAGTTAGTTAATAAATC 1272928 33 100.0 33 ................................. AAAGATGCTAAATTTACATTAAAAGCTGTTAGT 1272994 33 100.0 33 ................................. TTACCCTTGAATCCTATATAAGCTCTATATCGC 1273060 33 100.0 35 ................................. TTTACTATCTGGCGTTACAACCTCTTGTGGTTGCT 1273128 33 100.0 33 ................................. CACAGAGCATTGGAAGGCTTTTATATTGAAAGG 1273194 33 100.0 34 ................................. AAATACTGCAGGGTCATCAAATGACACGATAGGT 1273261 33 100.0 33 ................................. CACAGAGCATTGGAAGGCTTTTATATTGAAAGG 1273327 33 100.0 34 ................................. TCTGTGGAAGGCTCACAAACCACGTCATTACTAG 1273394 33 100.0 34 ................................. AAATACTGCAGGGTCATCAAATGAAACGATAGGT 1273461 33 100.0 34 ................................. AAATCAATAACATAATAAATTATGTTTACAAACA 1273528 33 100.0 33 ................................. TTTTTTAGTGAGCTGTTTTACTTGGTTAGCCAC 1273594 33 100.0 33 ................................. GCCAAACATGGTGGTGGTGACATGAGCTATACT 1273660 33 100.0 35 ................................. AAAAAAGGCTACTAAAAAGGGCGATATTGATAAGC 1273728 33 100.0 34 ................................. TTTAATTACTATGATCTGACATAGTAGACCATGA 1273795 33 100.0 35 ................................. ATTTTCGCTAAGAACCATTCCTTATAACCGTTTGT 1273863 33 100.0 34 ................................. ACATTTGTAGTTACAATTGAGACAATTCAAGGCA 1273930 33 100.0 34 ................................. TTCAAATAAGGAGTGAAATTATGACTGACTTTAC 1273997 33 100.0 33 ................................. ATCTCGAATCTGCTGAGAATAGAAATCAATTAT 1274063 33 100.0 32 ................................. ACGGCGATAATTGTGTTGGTGGACTAGTCGGA 1274128 33 100.0 32 ................................. CTCAAACACTCGTTAACGAGATTACTCTTTTG 1274193 33 100.0 35 ................................. TCAAGGCACTATACAACGTTATGTTGACGGCACTA 1274261 33 100.0 34 ................................. AAGAACTCGAACAAAAAGAAGGAGAATCCGTAGC 1274328 33 100.0 34 ................................. CGCGTACTTTTATTGTAGTAAGTTTGACTGAAAT 1274395 33 100.0 33 ................................. CCTGCCAATGTTTCATGACATTGCTCAACTGCC 1274461 33 100.0 37 ................................. CCGGACGAGGGACGAGGGCCTAACAATCCGTTGGCAC 1274531 33 100.0 36 ................................. AGTTTTTTAAAAATGGTGAAAGGCAGCCAGGTACAA 1274600 33 100.0 34 ................................. AAAGCTAACATGCAGATTATCTCTAAAAAGATGG 1274667 33 100.0 35 ................................. TAAACAAGCAAATAATATTATGAGTCTTGGCAATG 1274735 33 100.0 35 ................................. TAAACAAGCAAATAATATTATGAGTCTTGGCAATG 1274803 33 100.0 34 ................................. TCTCACTTGTACATACGTCCTGCCGTCCATGATA 1274870 33 100.0 35 ................................. GAAATCATGCAGAGAGCGTCATTTGAGTTGTATGA 1274938 33 100.0 38 ................................. TTATCATCCAGTATTAGTTAATATAACATGATCACCTG 1275009 33 100.0 35 ................................. TTATAGTGACTTTAATAATTATTATAAGGGATATA 1275077 33 100.0 33 ................................. CAATGCGTTTGATCCTGTGTTATTTGGATTGCC 1275143 33 100.0 33 ................................. TCGTTAGTGCTTCACGTAATTTTTCGTTTGCGC 1275209 33 100.0 32 ................................. TTATACTCATTTTTCAATGTAAGGGATGGAAA 1275274 33 100.0 35 ................................. GACAATTGAAGGATTTATTAGACGATGGGATATTA 1275342 33 100.0 33 ................................. CTCCTAATTTTTAGTAAATGGTAGTTTAATATC 1275408 33 100.0 34 ................................. AATACCCCATGATTCACGGCCAGCACCCCAGCCA 1275475 33 100.0 33 ................................. TTCCTGCACCTCTAAAGTGAATAAAATCGGCTC 1275541 33 100.0 35 ................................. TTACCACTAGCAACGGCTCCCATGCTGTTATCCAA 1275609 33 100.0 32 ................................. ACTTATCACAGTTAGTAGAGCTATTCGTAAGC 1275674 33 100.0 34 ................................. CACGCGATAGCAAATTTACAACATCACAAGATAT 1275741 33 100.0 33 ................................. TGTAAACTTTTGGCTCGTCGCAACCAAAGGTAG 1275807 33 100.0 34 ................................. CACAACGCATCATCCAGCTTGGGATGCTAAAAAC 1275874 33 100.0 34 ................................. CATAACAGAATCAGGTAATGTCACATAACGTTTC 1275941 33 100.0 35 ................................. CTCACCTCGCTTTCTTTTCTTTAAAAACTCAATCG 1276009 33 100.0 33 ................................. AGTACATTAAAACCCATCTTTTTTGAAATATAA 1276075 33 100.0 35 ................................. AAGATATAGACATTTCATATGAATTGGATATTGCT 1276143 33 100.0 34 ................................. CAATCTGGCAGCGCGTTGACTGTTACGGTGTCAA 1276210 33 97.0 34 .........................G....... CAATCTGGCAGCGCGTTTACTGTTACGGTGTCAA 1276277 33 97.0 34 .........................G....... CAATCTGGCAGCGCGTTTACTGTTACGGTGTCAA 1276344 33 100.0 41 ................................. AAGATATAGACATAGACATTTCATATGAATTGGATATTGCT 1276418 33 100.0 34 ................................. CAATCTGGCAGCGCGTTTACTGTTACGGTGTCAA 1276485 33 100.0 33 ................................. AAAGATGCTGCCACAATAAGCGTTAGATGTATT 1276551 33 100.0 33 ................................. AAAGATGCTGCCACAATAAGCGTTAGATGTATT 1276617 33 100.0 35 ................................. GGATAGTAAGTTGAAAGCGCCGTTTGAACGTTTTG 1276685 32 78.8 0 ...................T.-.AA...C..CA | G [1276712] ========== ====== ====== ====== ================================= ============================================================== ================== 111 33 99.8 34 GTCTCTCTCTTTATGGAGAGAGTGGATTGAAAT # Left flank : GAATATCCGCCATTTTTATGGAAATGAGGAATTGATATGCTAGTATTGGTCACGTATGATGTTGCAACAAAATCAACCTCGGGTCAAAAGAGACTAAGAAAAGTCGCAAAAATATGTGAAAACTATGGTTTGCGTGTACAAAATTCTGTTTTTGAATGTATAGTAGACGCCACACAATTTAAACAGTTAAAATTACAATTAGTGGATAGCATTGATCCTGATATAGATAGTTTGCGCTTTTATCAATTAGGAAATCGTTATCACTCGAAGGTAGAGCATATCGGAGCTAAGGAAAGCTTTAACGTGGAAGATACTCTAATTTTATAGTGAAAAATCGATCGGTGCGAATGTGAAGCAAACATGATTTCCCAGAGGGATTCGCACCTCTATCTTCGAAAATTATCCATTGAATTGGAAATGAATCTAGGATAATATGACCTTATCCCATAGTTTTTTAGTGAAAAATAGTTATATTTATTAACTTTTAATTATTTTTCACC # Right flank : ACCAATATGTACATTTTTGCTCGTTTAAGGGTGTACAAAATTACTCGTTTGTTGCTAAATGATTTTTCAGTCGGTATGAATCTCCAACGATTGTGACAACGCTTGCGTGATGTAAAATACGATCTAAAATGGCATTCGCTAACTTTGGTTCCAAGAAGATTTGATCCCAATCTTTGAAGTTCGTATTTGTTGTAAAGATAGTACTACGTTTCTCATACCTTGCATCAATCAACTGGAAAAATAGCTTTGCATCCTCCGGATCAATCGGTAAATAACCAATCTCATCAATGATTAATAACTTATATTTTGTATAATGTTTCAGACGGCTCTCCAAGCGATTTTCAAGGCGAGCCCTTTTTAGATTTTGAATTAAATCATGACACTTAATAAAATACGTACTTGTGCGCTTTTTCGCAGCTGTAATCCCTATTGCTGTGGCCAAGTGGGTCTTGCCGACACCACTTGTACCGAGAAAAACAATGTTTTCATTGGCTTCGATA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTCTTTATGGAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.61%AT] # Reference repeat match prediction: F [matched GTCTCACTCTTTATTGAGTGAGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.20,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1280628-1280207 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000005.1 Lysinibacillus macroides strain DSM 54 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1280627 29 100.0 36 ............................. GTACCACCAGCACCAGCAACGGTAGAGGAAGAACAG 1280562 29 100.0 37 ............................. CCGTTACTCATTATGGCAGGTGCTGGCTCGGGGAAAA 1280496 29 100.0 37 ............................. AACGCTGCCGACACAGCGCGCGGACATTGAAAACTCG 1280430 29 100.0 35 ............................. AACTACTGACAGCAGTAAAGGGGCTGCTGCCGAAG 1280366 29 100.0 38 ............................. GGCGTCTATGTATTTGACTGGAGCAATCAGGGTATCCC 1280299 29 93.1 34 .......................A....G TTAATCTATCGAGGTTTCGAAACAGAACTAGCAA 1280236 29 82.8 0 C...C........C.......G.A..... | G [1280229] ========== ====== ====== ====== ============================= ====================================== ================== 7 29 96.6 36 GTTTTTCATTAACTAAGTGGAATGTAAAT # Left flank : ATATTCAATATTATATTTTCTTAAAAATAAATTAATAAAAACTTACACTGGATTAAAATTTTATTAGGATGATATTCTCATGTATTTTTATTGTCATTCTTGAGATAATGAAATTTTAAGCAACTAAGTGGAATATAAATGTGTTTGTTTTAATGAAATTTAATTTGTTTGAAAATCATCTTTATTTTCTATTAACTATGTGGAACGTAAATTTTATCTTTCACCTGTTCAAAAAAGCTGTTAAAGGAATATGTACTAGAACTACCTCAAAAATAAGCTATGATGTAAAAAAGGTTTTGAAGGCATACTTTAATAAGATTGCAGTGAATCATTTTTTACACAAAATTGCTTCAAAGTGCGCCATCCCTAGCTTTACGGCACATTGATGTCAAAGGTAAATTTTCAGACTACCGATTGGCTGCAAATTACTAAAATTCACTGCCATACCCAACCCACTAAAGCGTTGAAAAATAAGGGTTTTTTGATTATGATTAAGGTGG # Right flank : TTGCCTAAGCTACTACCAAGTATGATTTTCTTATCAGATCTTTTGTTACTTATGTACAATAAAAATAACACCTATCATTATTTTCACTATTGTAGTTATTTTTTTGAAGGAATCGAACGCATATAAAACACCAGGCACCTCCTTTAATTGATACGTTTATCGTACCGGAGGTGCTTGGTGTTTTGTAAGCCCGAAATATAAAAAAATAGCGCACCTTAATGGTACGCATGACGAATGGCCAGCTAGCTGAATTTTTTTCAGCTGGCTGGCTATTTTGCACATGTGGCTTGAATATTTTCTGACCATGGTAGATAGTTATGTAAAATTTCAGGTTGCTGGTGAAACAGTACATTGGGTAACTCTGTCATCAACTTTACCAAGTACTGATAAAAATCAATTCCGTTTGCCTTAGCTGTTTCAGCTAAACTTAAACAAATGGCATTTGCTTTCGCACCTGCTTCACTAACAGAGAAAAGCCAGTTTTTTCGACCCATGACATT # Questionable array : NO Score: 3.09 # Score Detail : 1:0, 2:0, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATTAACTAAGTGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 1289631-1289921 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000005.1 Lysinibacillus macroides strain DSM 54 Scaffold1, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1289631 29 100.0 38 ............................. CTACTTGATTAGCGAGCACTAAGAGTAATGCGATTAAC 1289698 29 100.0 35 ............................. CGCTTTATCAATCAGCTTTTTGTCTACTGCTTGTT 1289762 29 100.0 36 ............................. TAGCTTTTACACGCATTTTTAAGCTAGTTGCTGTAG 1289827 29 100.0 37 ............................. TTAATAATGACATTCGTGGATGCCTCGTCATTTTTAC 1289893 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 100.0 37 GTTTTTCATTAACTAAGTGGAATATAAAT # Left flank : ATATAAAACGTGTAGGGAAGGTTCATAAAGTGTTGAAAAAATATTTAACGTGGACACAAAATTCCTTATTTGAAGGAGAAATTACAGAAGGGCTTTTAAAGCAATGCTTAGCCGAGCTCGCCACAAAAGCCAATCCCCATGTTGATTCTATTTATGTCTATCGAATTGCTAATCCAAAAAACATGAAAAAAACGGTCTACGGTGTAGAAAAAGATTTTGAAAGTATGTTTTTATAGAGGTTAAATAAGAAAAAGAGAATCTATAGGAGTTAATCAACTCTTGCCAAAATGGAATCTAATAGATTCTCTTTTATAAGATTGCAGTGAATCACTTTTTAACACAAAATCACTTCAAAGCACACCACATCTGACTTTACGGCATGTTTGGGTCAATGGCCAATCTTTAGACTACCGATTGGCTGCAAATTACTCAAATCTGCTGCTACCACTAACCTATCAAACCGTTGAAAAATAAGGGTTTTTTGATTATGATTAAGGTGG # Right flank : TTTATAGATACGTTTACAAAAGTAGACGATGCGGCTAAAGCAGGCTTTATGGCTGACATCCAATACTTACAAAAATAAGAACATAGAATCGGAGGATTTCAATTATGAAAAAGAAGAATTTATTTTTAATGGCAACTACTGCAATGCTAATGACACCAGCACTTTGTGTAGGATTTAATCCTGTAACAGCTGAAGCTAGTACAACTTTTAAAGATGTTAAAAGCAGTCACTGGGCTTATGGTGACATCTCTAAGGTAGCTCAAAAGGGTTATTTAAAGGGTTATGAAGATGGTACATTCCGACCTAGCAATCAAGTAACTCGTTCAGAGTTTGCAGCTATTCTGTCTCGTATATTAGGAGTAGAAGCGACTAAGAAAAACTCTTTCTCTGATGTACCATCTAATCACTGGGCTTACGATTCAATTAACAAAGGTATCAGTGCTGGATTCATTGAAGCAGGAACAGGTAAATTCGAACCTAATAAAGCTATGACTCGTGCA # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATTAACTAAGTGGAATATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 5 1293526-1296425 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000005.1 Lysinibacillus macroides strain DSM 54 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 1293526 29 100.0 37 ............................. ACACGACTTCACATTCAAAGTATATAAGTCGAAGGAT 1293592 29 100.0 35 ............................. AAAAGAAAGATACAGAAGAAACAACTACAAAAAAA 1293656 29 100.0 35 ............................. CGCTCAAAAGAACGTGACTTGAAAACTCATTGCTC 1293720 29 100.0 35 ............................. GGGCTTTGTTGTGTCATTTAATACGCTTGTCATGA 1293784 29 100.0 36 ............................. TGTTTTCGATCGACAAAATTGAGCGTGAGGCAAATT 1293849 29 100.0 35 ............................. TTATGATGTAGATACCAATGACATAATTCATGCGA 1293913 29 100.0 37 ............................. ATGCATAGTCACCGCGAGCATGTTGTTTGCCTACTAT 1293979 29 100.0 36 ............................. AGTGCTGTTCAATGATTTCTTTCATTTCTTTTACTT 1294044 29 100.0 37 ............................. ATATCCTCACCAGTTGTCTATGATGGTGTAAATGAAA 1294110 29 100.0 36 ............................. CGTTGAGCGCAATTTACGTCGTATACCTTACCTTCT 1294175 29 100.0 39 ............................. TCAGACGAATAAACTTAAATGGATTGCTGATTTGCTGAA 1294243 29 100.0 37 ............................. TATGATGAAAATGACGATACTATCACGCAATTTATCA 1294309 29 100.0 35 ............................. TTGATTTACTAAAGGCTGCTAAAAAAGAGGGTGAG 1294373 29 100.0 37 ............................. CTATTTGCTGACAAATAAAAGCACGACACAAATCGGT 1294439 29 100.0 37 ............................. GCATTTCGATTGTTCTCACAACATCACTTACAAAAGA 1294505 29 100.0 39 ............................. CGATGAACCATTCCACCGCTTCCACGTGCCACCAGCAAT 1294573 29 100.0 35 ............................. GAAAAGGTTGCTGATGATATTAAGAAGCACAGAGA 1294637 29 100.0 37 ............................. CATTGAATGAAACTGTTGATTATGCAGCGAATTATTT 1294703 29 100.0 35 ............................. CCCAACCAGCAAAAAGTAAATACGAGACATTTCCC 1294767 29 100.0 36 ............................. ATGAATATATTGATTATCTTGAAAGGGAGCTAGGGA 1294832 29 100.0 36 ............................. TCACAAGATGAGGTTGAAAAGGCTGAACGTCAATTA 1294897 29 100.0 34 ............................. TATTGAGTTACTGCAGATGTTAAAAGAGCATCAA 1294960 29 100.0 37 ............................. ATTCTTGATTGTGTGAAATCAGAACTAAAAGAAGTAA 1295026 29 100.0 39 ............................. ACCGAAAAGCAAGCTCTGCATCCATTAACCAATGTCTCG 1295094 29 100.0 37 ............................. CACTAAAGAATGTGTTAATTGCCGTAAGCTTAAAGCA 1295160 29 100.0 36 ............................. AATGAATATCGTTTTGTAGAATGGTTGCAACATGCA 1295225 29 100.0 35 ............................. CAGGCTGTTATGAATGGGAGGATATAGCTGACAAG 1295289 29 100.0 35 ............................. ATAGAGCGCAAGGCGAGCGTTGATGAGTTAGTAGG 1295353 29 100.0 38 ............................. TTGTTTATCAGGTGCAATAACTAACTGTGGAATTTTAC 1295420 29 100.0 38 ............................. TAAATATTCGGAACGCAAAGAACGCAAGCCTGAACTAC 1295487 29 100.0 35 ............................. TGTTGGGAATGCTGGGGAGCCATCTATAACAACCT 1295551 29 100.0 35 ............................. ATTGAAAGACCAATAGGCGTAGCGTTAAAGGAACT 1295615 29 100.0 37 ............................. ATTACATGGAGGGATAACATGGATAAGAAACAAGAAT 1295681 29 100.0 37 ............................. GTTAGCGCTGCTGGTGGAGGTACAACTAGTGCAACAG 1295747 29 100.0 35 ............................. ATATCCAATTGTCCACACACCAGCTGGGCATACAT 1295811 29 100.0 36 ............................. TACCAGCGGGGACAAATACAATTGGGGGTGTCATCG 1295876 29 100.0 35 ............................. CTTTTTGTTACTCAATTACTAAAGCCAGACCGATC 1295940 29 100.0 35 ............................. TGCTGCTCTAATAATGCCGCTCCTTGCTCGTTAAC 1296004 29 100.0 37 ............................. TTAGTAAATTCAATTAGCCAACAAGATTCCATTTTCC 1296070 29 100.0 39 ............................. TTAAAAACTCCGCTATAATCTACCCATGAAGGACTTTCT 1296138 29 100.0 35 ............................. GGTGAAGATTATGCTGCATCTATTAATAAAGATGA 1296202 29 100.0 37 ............................. AAAGTAACTACTACAACAGCACCAAAAGTTGTTGCTG 1296268 29 100.0 35 ............................. GTAGTAGTCCAAGCTGGTTTTAGAAAATATAACAC 1296332 29 100.0 37 ............................. CTTGTGCCTCCATATTCGTTATCTGCACCCACCGCAT 1296398 28 82.8 0 .............-G..AAA......... | ========== ====== ====== ====== ============================= ======================================= ================== 45 29 99.6 36 GTTTTTCATTAACTAAGTGGAATATAAAT # Left flank : TATAATGATAGTGAACAAGAAGTACTATACAAACGTGGTACACGATTCAAAGTAATAGATATTCAAACTGTAGAAGATAAATTATTGATTATTTTGGAGGAATACGATGAATAAGAAGTATGAACCATTCGAACACCCAAGATGGCGTGATAACCCTGTTTTTGAAGTTGTAGGCGAGTTTCCATTAACCGAAGAGCAAAAAAACGCAAAGAGCAATCTGATAAAGAAGTAGCTGAATTTTTGAAAAACCGTAAGAAAAATAAGAAAGCGTAAAGCACTTGACTATAAAAGGTTGAGTGTTTTTATTTTGGTCAAAATCCCAAGCGCTTAGGAATTTAGAAAGAGAGGATGAAATCATATGTCATTTGAAAAACCATCTCCACCACCCCAACCTGCAAGACCAGCAACAGAAAAGGAATCACTAAAAGAGGGAATAATGTATATTCCACAAATGTTACCTAAAGGACAAGTACGCTACAGCCAGTCATCTTATGTAGGTG # Right flank : TACATAAGCGATATTTTCTTTTGTAAACAAGGTACACTTTCATAATAAAATACCAATCTCTACGTTGCTGTTGGACTAGCCGTTGCTATATTGTATTCACACAAACGCTCATTTTAAACTTCGCTTGGCATAAGGTTTATCATAGGTATTTTGTTTGGTACTGTTTTTTATGGTTGTGTGCAATCAAATAATTTGCTACAATTCAATTGACCAGTGGTTAGTGAGGTGCTGAGAGATGGCGAGAAAAAAGGTAGAGGATGAATTGACAAAGGAAATGATTGTGGAAGAGGCAGATCGTCAGTTTTTACAGCAGGAGTTTCAGCAGGTGTCGATGCGGGCGATTGCGAAGGCGCTTGGTTGTAGTCATGGTGCGATTTATTATCATTTTCAGAATAAGTCTGATCTATTTCATGCAGTAATTGAAAAGTATTTTGCGGTGTTGAATCATTACTTGGATGAGGCGTTACAAGAGAACGGGCTTGAGGGGACAAAGAGGGTGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATTAACTAAGTGGAATATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 16486-11880 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000010.1 Lysinibacillus macroides strain DSM 54 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 16485 33 100.0 34 ................................. GCTTTAATGGCTGTGGCGCTGGTATACTATTGAC 16418 33 100.0 35 ................................. TAGCGACATCGGTCGTATGGGATTGGACGTTGCCG 16350 33 100.0 34 ................................. CTCAAAGAATATTGATAGAGTGGTGGGTTTCCAC 16283 33 100.0 33 ................................. CTCATTTTAAAAGTTAATTTTTTACAATAAGCG 16217 33 100.0 35 ................................. TACATGTTCAATTATTAATCGAGGCGCTTTTGATG 16149 33 100.0 34 ................................. ACTCCTTATTTGAAGAAATAAAAACACCCTATTT 16082 33 100.0 35 ................................. AATCCAAAAATATCACGGAGAATAGGAACATCAAT 16014 33 100.0 34 ................................. TTCAATATTTGCAGATGAGCCTTGTGTAGCTCTC 15947 33 100.0 35 ................................. AATTGGTTATGAATTTGTTTGGACAGCAGATGTTG 15879 33 100.0 36 ................................. TCATGAATGAAGAATTAACAAGAGATGTGTATACGC 15810 33 100.0 34 ................................. TTATATAAGCTAACGATATGGGCCATGTAAAAAC 15743 33 100.0 34 ................................. ATACGTACCTTGAGGATCATTATAATGCAGTATT 15676 33 100.0 34 ................................. CTCAAAGAATATTGATAGAGTGGTGGGTTTCCAC 15609 33 100.0 33 ................................. CTCATTTTAAAAGTTAATTTTTTACAATAAGCG 15543 33 100.0 34 ................................. TTATATAAGCTAACGATATGGGCCATGTAAAAAC 15476 33 100.0 34 ................................. ATACGTACCTTGAGGATCATTATAACGCAGTATT 15409 33 100.0 34 ................................. AAATGCTTCAAACATCATTGAATTTCGATATAAG 15342 33 100.0 35 ................................. ATTGGAACATTGCAATAGATCATCTTTTGCAGGAG 15274 33 100.0 34 ................................. ATTGTCATGCAGGTAAATAGGAGTCCAGCCATTG 15207 33 100.0 33 ................................. TCTATGCGGCTTGTCCTCCACAGATAATGATTT 15141 33 100.0 35 ................................. TGTATCTGTGTAATGATAGCGAATCATTGTGTATC 15073 33 100.0 33 ................................. GTAGGAAATATCACAGATGTTTTAGAGTTCGTT 15007 33 100.0 34 ................................. ATACGTGCGTGCCAACACACCCAAATCTTTACGT 14940 33 100.0 34 ................................. TCCAAGGTATTGTTGTAACTTTAAAGCCACTTCG 14873 33 100.0 34 ................................. TCCAAGGTATTGTTGTAACTTTAAAGCCACTTCG 14806 33 100.0 34 ................................. TTTGATTGATGATGATACCAAGCGGAATGAAATT 14739 33 100.0 35 ................................. ATCTAATTGATCTCCTAAAACATCTGTACGGAATT 14671 33 100.0 35 ................................. TTCCCTTGTATAGCCTGTGCGATTTACATGTGTTA 14603 33 100.0 36 ................................. GCTCCAAACTTTAATCAAATGTCATCCCAGCACCAT 14534 33 100.0 34 ................................. TTTCTGATGGCGTGTTGGCTACTGAAGGCTATCA 14467 33 100.0 35 ................................. GCTTAATTTTTAATACGAAAGATTTTTTGATTATG 14399 33 100.0 33 ................................. AACTGAAGGAACAATAACTGTCATCGTCTTATC 14333 33 100.0 34 ................................. ATTATGTATTTCCTCCTTTTAATAAATCTCCTCT 14266 33 97.0 35 ............C.................... AACTGAAGGAACAATAACTGTCATCGTCTTATCGT 14198 33 93.9 34 C...................C............ ATTATGTATTTCCTCCTTTTAATAAATCTCCTCT 14131 33 97.0 33 ............C.................... AACTGAAGGAACAATAACTGTCATCGTCTTATC 14065 33 100.0 34 ................................. ATTATGTATTTCCTCCTTTTAATAAATCTCCTCT 13998 33 100.0 33 ................................. ACAGATCGCGGAGGACTTCCCTTGCAAGTAGCT 13932 33 100.0 34 ................................. CCTTGTAAAAGGTGATTCTCTTTGGAAAATTGCT 13865 33 100.0 35 ................................. AACAAATTTCATTCGTCATCTCCCCAATCCAAAGC 13797 33 100.0 34 ................................. GCTGTTTAGCTCCTCTGTTTAATAGACCCCCACC 13730 33 100.0 33 ................................. CATTCGTCATCTCCCCAATCCAAAGCAATCATT 13664 33 100.0 36 ................................. TACATAAGTTGGCAGATGGTTCGTTGGTACGCCATG 13595 33 100.0 33 ................................. TAAGATTATCTTCCGAGGTATGGATAAGCCAGA 13529 33 100.0 35 ................................. AAAATAATAATGAGGAGGTGGGACGGTGAACGAAT 13461 33 100.0 34 ................................. AGCTTGTCGAAGTGCTGAAACAGATGAAATAGAT 13394 33 100.0 32 ................................. GAATACAAACGAAATATCCCTATTGACTTATT 13329 33 100.0 33 ................................. ATTAGTTTCGTATTGAGCGTTAGTGTCATCAAA 13263 33 100.0 36 ................................. GTACTCAGCAGGTAAACTTTATGTAAAAGTGAATGG 13194 33 100.0 36 ................................. AAAACCAAGGGGCATTGGCTCATGCTGGTGCTTCAC 13125 33 100.0 35 ................................. ATATTGGGAGGAGCAACATTATGAATGAGGATCTA 13057 33 100.0 33 ................................. TATAACGATCATTTTAAACGTGTGATGAAACAA 12991 33 100.0 35 ................................. AGCACAAGGTACGCACTTAAAACTAGATGGTTTCG 12923 33 100.0 34 ................................. CAAGCTAGTAAAATGGCACAGTTCATAGAAGATA 12856 33 100.0 35 ................................. CATGTTGGTCTGTACCAAGAAGCATTGTTGTAGCC 12788 33 100.0 35 ................................. AAGAATGGAAATCACAAGGTAATAAGTACGACTAT 12720 33 100.0 33 ................................. AGGATTACGTTTGCTGAGTTTACATCTGGTACT 12654 33 100.0 36 ................................. CCATGAAGCACCAAACAAGACACCGAACAAAAGTTC 12585 33 100.0 33 ................................. CTTTATGGGAAAAGGGTGTTGAGGGTGCTTATT 12519 33 100.0 35 ................................. CCGTTTAGTATCCCGTGGGACGTTAAACGGTACAT 12451 33 100.0 34 ................................. ATTATTTTTTTGTAACCGTCACTGTCCTCTAGCA 12384 33 100.0 34 ................................. AAGAAAGGAAGTGAGTGAGAATGAAGTTTAATTA 12317 33 100.0 35 ................................. TTGATAAAACAGGAAAATTTAAATTGTGACAAACC 12249 33 100.0 35 ................................. TTGATAAAACAGGAAAATTTAAATTGTGACAAACC 12181 33 100.0 35 ................................. TGGCGTAACACTTTGTTGTACTTGACCTTGAGATT 12113 33 100.0 34 ................................. TTCGATGTTATCAGGATGTGTACCCTGATATAAA 12046 33 100.0 34 ................................. CACTGAGATAAATCGGCGTCTTAATTTCGATTGT 11979 33 100.0 34 ................................. ACAGGACATTGTTCAAAAAGTAAAAGAGGTTATA 11912 33 97.0 0 .........................G....... | ========== ====== ====== ====== ================================= ==================================== ================== 69 33 99.8 34 GTCTCTCTTTGTATGAAGAGAGTGGATTGAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTATGAAGAGAGTGGATTGAAATAGTTTTTGCATTATTTTTTATCAAAATTACCAA # Right flank : ATGATTGTACTTGGTCTTTATGGCTTAGTGGAATTATCTCTCTTTATACATGAAGAGAGGATCATAACCATGCGTCAGCTTGTTGGTTGTATTTGGTCCGAAAGCTCTCCTTTAGGATAAGGGGAGGCCTGTTCTTAGATTTTTGTAATAGATGAAAGCCGCCACCGATCAGGTATTGGGATAAAGATTCCCAATGCCTTTTTTCGTTGTCGCCCTAAATCTATTGTCGAATTTCTCCAAAAACGAATTTCTCTATCGTTTCTTAGCATACTCTGATTCACGCTGGAATAGATTGTTGTAGTGCATGAATTCATCAACTTAAGAAGCTAGAGATGGAAGACCAAATATGAGTGCTAGGAACTAGAAGGAGACCTTTATATCTTGTGAAATGGAAGGAGAATCAAATGACTGAATATCATCAACAATCAGCTACGGAAGTCATGAAGATATTGAATGTCACCACGCAAGGCTTAAATGATGATGACGCTCAACGAAGACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTTTGTATGAAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 25676-21205 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000010.1 Lysinibacillus macroides strain DSM 54 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ======================================================= ================== 25675 33 75.8 55 .......................CTC.CTTTG. ACAACAATTACTGCACTTAGTCGCACAAATATTGGTCTCTCTTTGTATGAAGAGA 25587 33 100.0 34 ................................. CACAACCACAACAGTGTTAGACCATCAAAACGAC 25520 33 100.0 33 ................................. TTTGCTTTATTTATTACGCCATCCACAACACCG 25454 33 100.0 36 ................................. CCCTATAACCGTCTATTCGTGGGCTACACGCTCTTG 25385 33 100.0 34 ................................. CTGTTGTTGCAAGCTATCAATTCGCATACTACCT 25318 33 100.0 34 ................................. CATTTTTTGCAACTTCCACTGTTTGAATGTTTGT 25251 33 100.0 35 ................................. TGGTCGTGAGTCTCGTAGTGATGAGGGAGAAAATA 25183 33 100.0 35 ................................. AAATTACGATCTGAAAGATAGTACGACAATGATAG 25115 33 100.0 33 ................................. GAGGGACGTGTATGGCTTTATAATGCGCCAAAA 25049 33 100.0 33 ................................. AACTGTTAAACCATGTACATCATTAAATCTAAA 24983 33 100.0 33 ................................. ATTACGCTGAATCATGGAAATTTCTTTTGCCAT 24917 33 100.0 33 ................................. AAGACGTGTGATTTTTTGGATTGGCTTGTCCTT 24851 33 100.0 37 ................................. ATGCTATCACCTACCTTCCTATATTTTTATGTCGCAT 24781 33 100.0 33 ................................. TTGCCACTAGCAACAGCTCCCATGCTGTTATCT 24715 33 100.0 36 ................................. TTATTTTAATGTTTACAATGCAGTGGGAACGCTAAC 24646 33 100.0 34 ................................. TGCAACCTCAGACCAAATGAATCGTGCTTTGCGT 24579 33 100.0 32 ................................. CTTAAGAATCGAATCTTGATAAGCAGTTATCG 24514 33 100.0 33 ................................. TGTCTAAAGATAAAAATAAATCTCGTTTAGCTA 24448 33 100.0 34 ................................. CTCATACGCTCTAAGTATTCAACAACAGCCGTAG 24381 33 100.0 35 ................................. AATTCGTCTCGTAGAAGGTAATAACCATATATGTC 24313 33 100.0 33 ................................. CACAACTAATACTGTGGAGGACATCATCGAATT 24247 33 100.0 33 ................................. AATACCTTTGATTAAACCCTCGTTAATGTTGAC 24181 33 100.0 35 ................................. CAGCAAATCGTTTGTATCAATCCTACCCATCAGCT 24113 33 100.0 33 ................................. TCACGGAATAACAAACCACACGCTGCGAAGTCT 24047 33 100.0 33 ................................. ATCATCTCGCCACTTGTTTGGTTTGCTGAATAC 23981 33 100.0 34 ................................. GATAAAAGGAACGATTTCCCACTTGACGCTCACC 23914 33 100.0 34 ................................. CAGTTACATATTTAATATCTCTTAGTAGAACATC 23847 33 100.0 35 ................................. GATCACCTAACACCTTCATAGCAGGAGAATTTTTC 23779 33 100.0 33 ................................. AGTTGTACCATATGGCAAGTCGCATAAAATCAT 23713 33 100.0 34 ................................. TGTTAAAAATGTATCTAATGGCATACTGTCTTTT 23646 33 100.0 33 ................................. TTTAAAGACCTCGTGAGTGTTTATATCATAGTC 23580 33 100.0 34 ................................. TTGCTTGATATTTAAAACGATGATAAATAACGTG 23513 33 100.0 34 ................................. GCTCCCATCATGCTACGTCTACGCCAGTGCATGA 23446 33 100.0 33 ................................. TCCCTTTATTTATGTATTTTATCTATTTTGTTA 23380 33 100.0 34 ................................. CAATCAACTCCTTAGTTTATATTTTGTTTTGCTC 23313 33 100.0 34 ................................. GTTTGAAAATCAGTAAAATAAAGATGGTATCCTT 23246 33 100.0 33 ................................. TGATAATGGTAAGTTGCCCTATCATGAGTATTT 23180 33 100.0 34 ................................. TTGATTCGTGCTTACTATCCATATATATACAATA 23113 33 100.0 33 ................................. ATCAATGTATACATCATCGCGAGCTAATACGTT 23047 33 100.0 34 ................................. GGGTTGCGTAGTAGCAACTGGCAACACACTAAGT 22980 33 100.0 34 ................................. ATTTGCGGCTGTTGCATCAGCAATTGCTATGGTA 22913 33 100.0 34 ................................. TGCAAGCTCTCGCCTTTTCTTTAGTATCATTAAC 22846 33 100.0 32 ................................. TGATAATGGTAAGTTGCCCTATCATGAGTATT 22781 33 100.0 34 ................................. GGTAATGTTCCTATTGATCCAAGAGAAAACGAAA 22714 33 100.0 34 ................................. ATTTTAATGGATTCCTTCAAATCATTCCCTCTCT 22647 33 100.0 32 ................................. GGCCCTAAGTCCTCGAGTGGTGTACCAAATAA 22582 33 100.0 34 ................................. AATTTACAACGTGAAAAAGTAATCAATGGCGATT 22515 33 100.0 34 ................................. ATAACCAAATAAGTTTTGTAAAGTATATCCTTGC 22448 33 100.0 33 ................................. CATATCGAGTTGATAATTTGCTAAAAACTGCTC 22382 33 100.0 34 ................................. AGCCTATTTATCCAATCAATCCTAATAAAGCAGC 22315 33 100.0 35 ................................. CCACCGCATCTTTTGCTGTGTTAATAGGTGTCATA 22247 33 100.0 32 ................................. TCCAACCTGAATTGACATCTCATATACTCCCT 22182 33 100.0 35 ................................. CGGAATTTGGAGGTGTTGAACTGTGAAATATATAA 22114 33 100.0 33 ................................. AGGTGCTTCTCTTTTTATGTTGCTGGCATCAAA 22048 33 100.0 32 ................................. TATTATTTTGTTACTGTTTGTCGAATTTTTTA 21983 33 100.0 34 ................................. TATGCAGAGCTGGCTTGTACATTAACCAGCAGTT 21916 33 100.0 35 ................................. AATGTCTGGTCATCGTGGGAATGGTCGTAAAACAT 21848 33 100.0 35 ................................. TTAATAAACGTATCTGATTTAGCTTGTTTGCCGTA 21780 33 100.0 33 ................................. TACTAAATTTTTCTTGTGAAACCCATTGTAGAT 21714 33 100.0 33 ................................. CAATGGAATTTTATAATTAGGGAACTTGTACTC 21648 33 100.0 35 ................................. CCCCCAGCTCACAACAAAATACAAAGGTCTTTTGA 21580 33 100.0 35 ................................. TGCTCGCAATTGTTGCAAGATGTAAAGCCAGCTCG 21512 33 100.0 37 ................................. TACATCTGCTAATGCTGCATCTAAGCCCAAGCTTTCG 21442 33 100.0 37 ................................. TACATCTGCTAATGCTGCATCTAAGCCCAAGCTTTCG 21372 33 100.0 35 ................................. TACATGTTCAATTATTAATCGAGGCGCTTTTGATG 21304 33 100.0 34 ................................. ACTCCTTATTTGAAGAAATAAAAACACCCTATTT 21237 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ======================================================= ================== 67 33 99.6 34 GTCTCTCTTTGTATGAAGAGAGTGGATTGAAAT # Left flank : GGTAAAATGCCTCCTCATCGCCATGTTGAGCGAGGACCACTAATGATTGTTGTGTTGTTGTAATGAAAATCGCCTCCTTTACAGCTATTAGACTCAGCAAGTTATGATTTCGATTCAAGTTTTTATTTTAATGAAAAAGTTTCTAGCTATGGATAGAGCAGGTGCTGTGATCGGGATAATATAAAGGGGTAATGGGTTGTGATTACCAAAAGGAATTTCAGGTTTCAATGTTGAGCAATTAAATAAACAGGGTATACACACATTTCACAACAGCCGCAAGCACAAGTACCGGAATCGTGAATGCTAGTTTTTATAGTGTAAGCCTCTTTGTTAACTAGTAGGTGCGAATGTGAAGCAAACATGATTCCCCAGGGAGATTCGCACCTATAAAACAACCAATTTTCCATTGAAATGGAAGGAAGCTTAGGTTATTATGACCTTATAGATTTATTTTATAATGAAAATCAATTATAAATATTATTTTTATATTGCTTTTCACA # Right flank : AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCTTTGTATGAAGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : NA // Array 3 775045-769193 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000010.1 Lysinibacillus macroides strain DSM 54 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 775044 33 100.0 34 ................................. ACTATATATAATAAGGTAAATGTCGCAAAAATGC 774977 33 100.0 33 ................................. ATAGAAAGCTAGTTTTAGACATTATTAGCCATA 774911 33 100.0 34 ................................. CCTTAAATTTGTGTCATTGCTCTACTTATGGACA 774844 33 100.0 36 ................................. ACCGTGCTGTAGCATCGTTAAAGCATGATGAACGAC 774775 33 100.0 35 ................................. TCACCTCTTTACATATATAAAAATTTAAAATTAAA 774707 33 100.0 33 ................................. TAGCACTAGAAAAAGATAAATATTGACCGTCTT 774641 33 100.0 34 ................................. CACTTATTGTGGATTAATTAATTTAATAATAACT 774574 33 100.0 33 ................................. TAAAAAACCCATGCTTAAAGATTAAGCGTCCAA 774508 33 100.0 35 ................................. TGAATACATGTACAAAAAAGAGCAAGAGCGTAATT 774440 33 100.0 34 ................................. TATGCTTCCTGAATCTCGTAGATCAGACATCATT 774373 33 100.0 35 ................................. CACCAGTGAAAAGGGGTGAAGATAATGGAGATGGA 774305 33 100.0 35 ................................. TAGTTGACTATTTACAAATTGTTAGAGGCGAAGAA 774237 33 100.0 33 ................................. AAATAACGCTAATCATTTATTTAAAGGAAAACA 774171 33 100.0 34 ................................. GGATTCGTTTTTAAACGTTTGGCAACCTCTTTGA 774104 33 100.0 33 ................................. TATTCGATTAGCGTTGCTACCGCTGCGTCAGCT 774038 33 100.0 34 ................................. ATAGCATTGTTTAATCTGTTTTGCGATTGTTCAA 773971 33 100.0 32 ................................. TGTAGAACCTTGTTTTGTTGTATGTTCACTTG 773906 33 100.0 35 ................................. AAACATTGATTACGATACACGATACAGCTACACGT 773838 33 100.0 33 ................................. AACTCAGCCCAAGCCATTTTAAGGGCCATTGTG 773772 33 100.0 34 ................................. CTCTACATCATCACTGTGGACGGCAAATGAAAAT 773705 33 100.0 34 ................................. TCCCATTTTTCATAATTCCCATTATGCTTTATAT 773638 33 100.0 35 ................................. AATTTTAGCATTGTATAATTCTAATTTATTCACTA 773570 33 100.0 34 ................................. CTCTTGTGGCAACCAATTGAAATGTTGACCACAT 773503 33 100.0 34 ................................. TTAGTATTTAAAATTTTTCTCCAATACAATGATC 773436 33 100.0 34 ................................. ATAGCAATATTACGTGAAGCATTGACATCTGCAT 773369 33 100.0 32 ................................. TATTAAAGGAATTAAAATAGATGGGAACAAAC 773304 33 100.0 34 ................................. GGGTAGCTTTTTATCGCGTTTGTGAGCCGGTAAG 773237 33 100.0 33 ................................. TGTAACTCCACTTTTTATTGATTATTCATCGTT 773171 33 100.0 35 ................................. ATTTTGGTACCATCAGCTTTTATACGTGTCGTTGG 773103 33 100.0 33 ................................. ATGAATGTCAAAATTCAATCTATCTCAGCTTAT 773037 33 100.0 34 ................................. CCAAATCAACATAATTTGACATACCTGTAATATG 772970 33 100.0 35 ................................. ATTTTCGCCATTATATAGAAGAAAGTCAGATATAA 772902 33 100.0 35 ................................. CACGCATGAGCCTGTTGATTGGTCGTTGGATCAAA 772834 33 100.0 35 ................................. TAGTTCATAATTTTGTACTTGAAGCTCATTTTTTT 772766 33 100.0 33 ................................. TTAAAATTAAATGAAGTTGAATTTTTGGATTGG 772700 33 100.0 35 ................................. AAAACAGAACGCTTAACAGCTCCACGTTTAGCGCC 772632 33 100.0 34 ................................. GACGCGAACGAAAGAAACAATTGAGCTCACAGGT 772565 33 100.0 34 ................................. AACTGAACCAGGTGTTGCAGCTGTTATGGCGGCT 772498 33 100.0 34 ................................. AACTGAACCAGGTGTTGCAGCTGTTATGGCGGCT 772431 33 97.0 34 ............G.................... CTTTATGGTCAAGCATTAGGCCGCGTGCATACGT 772364 33 97.0 34 .......G......................... AACTGAACCAGGTGTTGCAGCTGTTATGGCGGCT 772297 33 97.0 34 ............G.................... CTTTATGGTCAAGCATTAGGCCGCGTGCATACGT 772230 33 100.0 34 ................................. AACTGATCCAGGTGTTGCAGCTGTTATGGCGGCT 772163 33 100.0 34 ................................. CTTTATGGTCAAGCATTGGGCCGCGTGCATACGT 772096 33 100.0 34 ................................. CTTTATGGTCAAGCATTGGGCCGCGTGCATACGT 772029 33 100.0 34 ................................. CAGTTTTCGCAAACTGCCTCATTTTGGGTTTTAA 771962 33 100.0 33 ................................. TCCCCACCCTGCTACAAAACGCAGTGCATCTTG 771896 33 100.0 34 ................................. CTCTTCACGCACCAACCAACTATAAAAACTTGAT 771829 33 100.0 35 ................................. TTTAGCTTCTTCTATTGTATCAACCTCATGGTATC 771761 33 100.0 33 ................................. AAAAAGGCTGGGAAGAGGTGCTTTGGATTTACG 771695 33 100.0 33 ................................. ACGTCTAATTACATTGTTTTGACCGTTTATATT 771629 33 100.0 33 ................................. ACTTATAATGTCCCTATACAGTTCATTATCTTC 771563 33 100.0 33 ................................. ATCAAGTGCATCAACTTTTCTTTTTTGTCTATT 771497 33 100.0 33 ................................. CTTGCGGTAGCCCTTTGTATGTTGACCTACAAA 771431 33 100.0 34 ................................. TTTCCAGATCCACTCATATCTAAACAGTTTAGGA 771364 33 100.0 35 ................................. CATTTGCTCTATCCTTTATAGCCCCCGCTAAACTC 771296 33 100.0 35 ................................. AAGTGTTTAGTGATGGTTTTAGTCAATTTGCACAA 771228 33 100.0 34 ................................. AATTGCAATCATTGGTGCAAATGCTGCAACTTCT 771161 33 100.0 35 ................................. CAAGGAATGATAGATTCAGTGTCCCCACCTTCTCC 771093 33 100.0 34 ................................. ATGGTATGGGTAACCCTCATTTTGAGCATCAATC 771026 33 100.0 33 ................................. CTGTCTAAGAAGATTAAACAGTGACCTTTGGGT 770960 33 100.0 34 ................................. AACTTGTTTGGGTTTAATGTTAAACATGACATTA 770893 33 100.0 34 ................................. TTGAAAAAGCATTGCAAGTTTGTAATGACAGGTT 770826 33 100.0 34 ................................. AGCTAAAGAAATAAATAATACTTCCAATAAATGC 770759 33 100.0 33 ................................. TAAATGAAAGTGAAACTCCAGAAGTTGCTACAC 770693 33 100.0 34 ................................. TTGATTAATATAATATTCTTTAGCTAAAGCTAAT 770626 33 100.0 34 ................................. ATTTACAAACTCAATTAGAAAAGCTATGGAACTT 770559 33 100.0 34 ................................. AATAACGGTTGAAATCACGAATAATCTTGAACAT 770492 33 100.0 35 ................................. ACCCATGCGGTAGTGACCGTATTTTAAGTCCCTCC 770424 33 100.0 33 ................................. GATATGAAAAACTTTACATTTGCAGCAACTGGG 770358 33 100.0 34 ................................. GGATAACCCTACTACAGCAGGGAATCCTGTCGCT 770291 33 100.0 33 ................................. TTTGATAGTGAAGAAGAAATGAAAGGTGAAGAA 770225 33 100.0 33 ................................. TTTGATAGTGAAGAAGAAATGAAAGGTGAAGAA 770159 33 100.0 34 ................................. ATTTTATAAGTCAATATTATAATTGATATCACCT 770092 33 100.0 33 ................................. AACAATGTCAGCAGCTGAATTTGAACAAATATG 770026 33 97.0 33 .............A................... TAAATGAAAGTGAAACTCCAGAAGTTGCTACAC 769960 33 97.0 33 ....................G............ AACAATGTCAGCAGCTGAATTTGAACAAATATG 769894 33 97.0 33 .............A................... TAAATGAAAGTGAAACTCCAGAAGTTGCTACAC 769828 33 100.0 33 ................................. AACAATGTCAGCAGATGAATTTGAACAAATTTG 769762 33 100.0 36 ................................. ATCAAATGTCTTGCCTGTACGCTTTTCATAAGTATT 769693 33 100.0 35 ................................. AGTATCGTACAAATCACGAATTTTAGTATCCTGAA 769625 33 100.0 34 ................................. CTAGTCAAAGACCCATGTCTAATAAAAGACCTAA 769558 33 100.0 33 ................................. AAAGAGCAAGTATCGATCTAGGGCATAAAAAGT 769492 33 100.0 33 ................................. TAATTCATCATCGTCTAATTCGTTAGCTTCAAT 769426 33 100.0 35 ................................. AAAAAGATTGATATTATCGCTGACGATCCTAAGCT 769358 33 100.0 35 ................................. CGTCTGAGTTTTGAGATAGTATCCCAGCACTTCTG 769290 33 100.0 33 ................................. TTTGGTGACGCAAAAGCGTTTTGTGCATTCTTC 769224 32 87.9 0 ....................G.CA-........ | ========== ====== ====== ====== ================================= ==================================== ================== 88 33 99.7 34 GTTTCTCTCTGTATGGAGAGAATGGATTGAAAT # Left flank : AATTGCTTTAGCAATTAATTTGGTTATTCCAGAAGGAGTGCCTTTTATGGACGAAATCATTCAATTTTTAGGTATCATAAAAAACCTTTTTAGAATTGTAACACGTTTTTTTAGAAATTGATCTGTGTTAAAGTGAATGGAGCCGTAAGTGAACAAATATGGTAAAGATTAAGGGAATGTTACTTTTCATTGGCTCCAGCCACTTCTTAAATCCACCTTTGTATGTTATTTTCAGAGAAATAGCAACAGAAAAGTAGAATTACCAAGCATCTAATTTTGGTTGTTATATATAATGAAAGTTTATAAATGCCAGAAGAGAACTCATCTCTTTTAAACAGCAAGTGCGGATGTCAAGCAAACATAATTTTCTAGGGAGATTCGCACCGATAATTCAATCAATTTTCCATTGAAATGGAAAAAGTTTTAAGCTAATCTAACCATAAAGATTTATATTTTAGTGAAAATCGATTGTAATTATTACTTTTATATCGATTTTCACA # Right flank : TTTGAGCCAGGCTTTTATTATACATTTGATTAGTCATTTCCCTTTGTATAGAGAGTTAGTTAAAGCGTGGTAAAATTAACTAGGCATGATTTATAATCAGCTAGAAAAAATAAAGGAAAACAACCATAAAGGAGACAAGATGGAAAAGACAATTGGTTGGAATTTTGATAATCATTATGTTCATTTGCCCAGTATTTTTTATTCTGAGGTTCCGTTACAGCCTGTACATTCACCAAAGCTAATACTATTGAATGAGGCACTTGCAGCATCGCTAGGATTAGATAGTCAAGCATTGCACACGGAGGAAGCGATTGCTCAATTGGCAGGCAATCAAATTCCAAAAGGAGCTAAGCCGATTGCACAGGCCTATGCAGGGCATCAGTTTGGTCATTTCACGATGCTTGGTGATGGACGTGCTCTGCTATATGGCGAACACCTTACACCTCAGTATGAACGATATGATATTGCATTAAAAGGTTCGGGGCGGACAGCTTATTCTC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCTCTGTATGGAGAGAATGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.64%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATGGAGAGTGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 924810-924323 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000010.1 Lysinibacillus macroides strain DSM 54 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 924809 29 100.0 35 ............................. AATAAATTTAAAAATTTTAATGAAAAACGACTCCG 924745 29 100.0 38 ............................. TCTGGATTAAATAAGTTATTACCCCAATCATAGCCTGT 924678 29 96.6 38 ..................A.......... ACAGGCGATTATGGTGTCCTCTATACATTTGGCACACA 924611 29 100.0 36 ............................. AAAGTATATTACGAGGAGCATTTTAGTTTGCAAGAG 924546 29 100.0 37 ............................. TTATGATAGTGGGAGCATTTATTTATGATAATTGGTC 924480 29 96.6 36 ......A...................... TCGCGAGCACAATTTATGTCGTAAACTTTTCCTTCT 924415 29 96.6 35 ......A...................... GAGGAGAGCGATCAGCGCGCCCTAGTGGATGATCA 924351 29 96.6 0 ......A...................... | ========== ====== ====== ====== ============================= ====================================== ================== 8 29 98.3 37 GTTTTCTATTAACTATGTGGAATGTAAAT # Left flank : GGATGTTACTCCCAATAGGGGGATTAACCATGTTAGTAGCTGATGCACGACGTATGCAAGCAATGATTACATTTTCGAAATCTTGCAATATAAGCTCTCCTGTGTCTAACGATATTGCAACTTGGTGGCAAAATGCTGTTGGTGAGATGAAAGAAAAAGATATACATTTCTTTTATTTAGCTTTGAAAGGAGCGCTAGTTAATAATTTGGGTAACAGTACATTGGTCTCTATAATGTTTTACGAGTTAGAAAAACGCAAATTGGAATTAGATACAGTCACTTGTAATTAATAAGTGCGAACCACCAGCGAACATAAAGATGCAGTGGATCATTTTATGGAGCAAATGTGCTAAAGACTTGTGCCATAAGGGATAAGCCTACTTTTTAGTACAACTCTATTTTTTTATATAGAAGGTTGACTGCAAAATCACGAAATAATAGAATCATACCCCTCCGTCAAACCTTGAGAGAACAGACTTTTTTAGTTATGATGGAGGTGG # Right flank : TGAGGAAACACTCTCTTAGGAGGGTGTTTTTTCATTGAAAGGGGTGAGAAAAATGTAGAAATGTGAAAATAATAATAGAATTTCCTCTATTATCCATGTATATTTAAGGAGAGGAGGAGATTCAATAATGAAGAAAATATTTTTTATACCATCAATATTGCTACTAAGCATTTTCTTAATAGCATGTAATCAAGAAAATGATGGTGGCAAGGAAACAGATAATACTAAAGACACGACAGAGGAATCATCTCCAGATGTAAAAGTTGATAAAGGACTTTTAAATGTAGAAGTTACACTACCTGCTTCGTTTTTTGAAGGTCAGGACATTGATACAGTGATTACTGAAGCGAAAAAAGAAGGAATCAAGGAAGCCATCAAGAATGATGATGGATCTATAACATATAAAATGCCTAAATCTGTTCATAAAGAAATGCTGAAAGAAATGGAAAATGGTATTTTAGAAGCGGTAGAAAATATTAAAAAGAGTGAAGATTTTGCTT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTATTAACTATGTGGAATGTAAAT # Alternate repeat : GTTTTCAATTAACTATGTGGAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 927886-927453 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCI01000010.1 Lysinibacillus macroides strain DSM 54 Scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 927885 31 90.3 36 ........CT.T................... ATATACCTCTAAATCCACGCCTACGCCTTTTAATCG G [927872] 927817 31 100.0 36 ............................... ATATACCTCTAAATCCACGCCTACGCCTTTTAATCG 927750 31 100.0 36 ............................... GAGAAGAGTTGCAGCAGATCGTGAAGGAGCAACAGG 927683 31 100.0 34 ............................... CGTCCGGAGCAAAGGAGTCAGGGGAAATATTACG 927618 31 80.6 35 ....CT...TC....AG.............. CCAACATCGAAACGATCTGCCATATGACCTGTCAG T [927606] 927551 31 80.6 36 ....CT...TC....AG.............. ATCTAATTGATAAACTAAACCTAGTAAAAGTTACGT T [927539] 927483 31 71.0 0 CAC.T..T.TATA.................. | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 88.9 36 TCACACCCTGTATGGGTGTGTGGATTGAAAT # Left flank : AAATCGGTAAGTGAAGTAATTGAACTATCAGAACTACTTTGAGTATTTATGCTTTTTAAATCTTGTATTAAAACATCACGAGATTCTCTTAATTTGATTTCTACATTCCAAGCCATATGTATCACCTCCTTTCTACTGTCAATATTCGACAGAAAAAGGGGAATGCCTTTAGTAATGTTTTGAGGGTGTATGAGGCTTGGTGAGAAGCTAAGAAGGGCAGGAAGCGGTGAGGGATGGGGATATGAAATAGAAAATTGAATTTTCAAAAAATATTCTAATAAACAATTGCGTCAATCTACTTGATGGTGTATTCTTAGAGGTAATTACATTACTTCTTAAATGCGGAAGCACCACAAGATTACCGAGTGATCGGGGTTTTGTGGTGTTTTTTAGGCACTAAATATATGTATTTGTGAGAAGTTATGATATAAAGGTAGTAACTACTTTTTTTAAATAGTAAAGATCAATTATTTGTAACTAAAATTGTTGATTTTTCGTAG # Right flank : CCTGATTAAGGAGGGTTTTCTATTAACTATGTGGAATGTAAATTGTGGATTGTATGTCGGTAACTTTTTATAAAAGACGCGTTTTCTATTAACTACGTGGAATGTAAATTTTGCATAGTAGTGTGGGATAGAGAACAATTAGTAGTAAAAATAGTAGGAATGATTTCGAAGAATTTAGGACAGTTAGATTGCGGTTAGGGGAATTGCTCATGTATAATATCAGTAATATTGAACCCGTAAAACAAGGTTTTAAGTTTCCTGTTTTCTATAAACAAAGTGGAATGTAAATATGGTTCAAATCTTAATAAATATGTTTTTCTTTCTATTAACTAAGTGGAATATGTAAATGCAAAAACACTCTCATAACAAAAGTGAGAGTGTTTTTGCATTGGAAATAAAATTGGGTCTAAATATAGCTATAAAGAGCGGTGGAAAAACTTGATAAATTTCCCACAACTGTTTATTATAAAAATATCCTATATAAAATCAATCCTATGGTG # Questionable array : NO Score: 8.56 # Score Detail : 1:0, 2:3, 3:3, 4:0.45, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACACCCTGTATGGGTGTGTGGATTGAAAT # Alternate repeat : TCACCTCCTTCATGGAGGTGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.84%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.50,-3.70] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : NA //