Array 1 68132-66544 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDEL01000165.1 Acinetobacter bereziniae strain CHI-40-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 68131 28 100.0 32 ............................ AAAACCATTTACAGTTTTTACAGCATCGAATA 68071 28 100.0 32 ............................ TAGAACTTCTGTCCTGTATTTTATTACTTCAT 68011 28 100.0 32 ............................ TTCATGATGAGAAGGCATCAAACATCATTCCG 67951 28 100.0 32 ............................ AGCCCAATCTGGAACAACGAAAGGGTATCCGT 67891 28 100.0 32 ............................ TGGTATATTATGCGAAATCAGTCATATAAAAA 67831 28 100.0 32 ............................ TAAAGAGCGTTTACATTTAGTTGCCTAAAGAG 67771 28 100.0 32 ............................ GACTCTCACATTTAACGTGCTTAGAACGTATT 67711 28 100.0 32 ............................ AAAGAAAGAGCGACAAGCTATGTCAGAGAAAT 67651 28 100.0 32 ............................ ACCCTCGATTAGCACTACAGCGCAAAATCCTC 67591 28 100.0 32 ............................ AATCCGAAAAATCAATGAAATCCAGTACGTTC 67531 28 100.0 32 ............................ CCGATCATTCCTTGGTTAGGTGGTAAGCGTAA 67471 28 100.0 32 ............................ CAATGCTTCAACAGATGAGCAAACAAGATGAT 67411 28 100.0 32 ............................ TGCAGGAGATTGACAACGAAATAACGTTGCAT 67351 28 100.0 32 ............................ ATCAAGTAACCATCCCGCCAAATCTTCTTCAT 67291 28 100.0 32 ............................ TGCATTTACAGCAAAGTCCCACAATTGAAAAA 67231 28 100.0 32 ............................ AACCAAGAAGCACCAAACATTCGTCAAACAGC 67171 28 100.0 32 ............................ GATTCCACAATTATTGATGGTGAAGCACATGA 67111 28 100.0 32 ............................ ATTGTGCTAGACCAATGAACAAACAGGCTTCA 67051 28 100.0 32 ............................ ACACATGAGAACGAAAGCCATAACCGCTGCAA 66991 28 100.0 32 ............................ TCTAAGGCGAAAGAGGTTGCTGGATATTTCCC 66931 28 100.0 32 ............................ ATCCTCCATTACCCATCCGATACCCTCCAATA 66871 28 100.0 32 ............................ TGTTTGTGCTGCACCTACATTAGCCAATGATG 66811 28 100.0 32 ............................ TCCCACGCCGATAGTTCTCGGGTGCTACTTGG 66751 28 100.0 32 ............................ TAACGAGCGATCTGAATCACATGCAGTTTGTG 66691 28 100.0 32 ............................ ATACTCGTCTGTTTTAAATCCTAATTATGACC 66631 28 100.0 32 ............................ TACCAATATTTGGGATGATGGTACATTTACTT 66571 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.9 32 GTTCACTACCGCATAGGTAGCTTAGAAA # Left flank : TTCCAGAAACAGACTTGGAATCATACATAATTCAAAATTTTATTCTTATAAAAACAATAAGCACTATTTTTGATGAAATTTACGTTATAGCACAAGTTTTATTGAACTTTAACATCATATAAAAATAATCTTTTTTAGCAGTTTATTAAGTTGCAAAGGAAGTATGTATTATCGTTTGCAAGATAAATTAAATTTTAAATATTTGATTGATAAATAAATTATTTTATATGAGGTATGTCGTATGATTCTAAGGAGTGAATCTATTAGAGTTTGTATTATATACTGCTATAACTTGTTGCTGATGAGGCAAAAGGGAACAATTTTGGGAAATATGCTTTTAATAGAATTACGATTATTCAAATATTTTAACCCAATATTTTTTTACTCTTTAACAACTGAATAAAATCAATAAGTTATATTGGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTACCACTTTATTTTTTGATCTAAAATTATA # Right flank : AATTGTTAAACCTCTCTGATGATTTTAAAAATTTATAGTTGTATAAATTGTTTATTTTATAGCAATAAAAAAAGCCCACTTGAATGAAGTGGGCTTTTAGAATTTGGCTCTCCAACCTGGGCTCGAACCAGGGACCTGCGGATTAACAGTCCGTCGCTCTACCGACTGAGCTATTGGAGAATCTGCATGCGATTATAAGGATATATCACGAGTGGTCAAGCCTTTGATGTCATCTTTTCTTCATTTTTGACTTGTATGCTTTTTATTTAAACAAATAAGATCAAAATTAAAAAAATGGATTTGAGTGGTTGCAAAGCGAGAGCTGACTTGTTAGATTAAAAACATAAAGAGCGTTTAAGTTTGACTTAAACCGTGTGGATTTAACCAACTTGCCAGCACTAAAATGGCTAAATAGGAGACAGCGCGATGACGACGCTAACTATTTCTCAAATTTTTGAAAAATTTTCTTTTTATCAAGAAAACTACCTTTCTATCCTGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACTACCGCATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3244-7171 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDEL01000260.1 Acinetobacter bereziniae strain CHI-40-1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3244 28 100.0 32 ............................ AATATTGTTAATGCAATTAATTCTTCAAAGAA 3304 28 100.0 32 ............................ ATAAAATTCCCACTACACAGCTTAATGAAAAA 3364 28 100.0 32 ............................ AAGAGCTAAATCTCTTGTTGTTGCTATGCATG 3424 28 100.0 32 ............................ GACTGTCAGAAACCCGCTGTTAGTTCTCAACC 3484 28 100.0 32 ............................ CGCAGAAAAAGAGGCGAGTTCCGGGGCTGATA 3544 28 100.0 32 ............................ ACGCTCGTCCGGTCGGGAGTAAGTGTTTAAAC 3604 28 100.0 32 ............................ GGCATACATCCAAGACCAACTACGAGCTAATG 3664 28 100.0 32 ............................ TTTCCTCGCAAGCTCGACAACGTAAAAATGAT 3724 28 100.0 32 ............................ TTTGATGATTTTGAAGGTAAATACATTTCTGT 3784 28 100.0 32 ............................ ACAAAAGTGCCTCCGCTTGGGGGCATTTTTTA 3844 28 100.0 32 ............................ ATGAGAATCTAAATTCATTGGAGGAATAAATT 3904 28 100.0 32 ............................ ATGTGTGAGTGGTATAAGAAATATAAAGAAGA 3964 28 100.0 32 ............................ AGCACTCGTCGCAGGTAAAAAGAAATGATTCA 4024 28 100.0 32 ............................ TAAGTAAGCAAGAAAATAGGAACCTACTGGAA 4084 28 100.0 32 ............................ TTATGCACGACAGCTCAAGACGACCGTTTGAT 4144 28 100.0 32 ............................ GGGATGGACTAATTGGAATGTAGATCAAATAA 4204 28 100.0 32 ............................ CTTACACGTTGATACGTGAAATTGATACTGTC 4264 28 100.0 32 ............................ AAAGCATAAGAACCTACAGCAGTGACAGTTGC 4324 28 100.0 32 ............................ TCAAGCACCGCAAATTTTACCTGAAGTCTACA 4384 28 100.0 32 ............................ TGAACGCATTGAAGTTATGGTTAAAACTGCTC 4444 28 100.0 32 ............................ AGTAAAATATTCAGATGGTGATAGGAGCATGT 4504 28 100.0 32 ............................ AAATCCGAACGACCCAAATAATATGACAAATT 4564 28 100.0 32 ............................ TGTCTTTTGATCAGGTTTAGAGTCAATCTTGA 4624 28 100.0 32 ............................ GTTGAAAGAACCTGATGTGTAACCGCTTGGGC 4684 28 100.0 32 ............................ TCAAATTAACGACTAAAGAAGCCGATAACTTT 4744 28 100.0 32 ............................ AAGCGGTCGATATTCAGTTTTTCCGCCATTCT 4804 28 100.0 32 ............................ AGCGAAGGTAAAGGCAAGGAACGTCATGCGAA 4864 28 100.0 32 ............................ TCGCACTATCAATCAAGCTTTGTTCGTTGTTT 4924 28 100.0 32 ............................ TATGAACTTTTGACTTTCTCGCCCACACAATT 4984 28 100.0 32 ............................ AGTTTGTCCAGCCGGGCACATTAATCGGTTTT 5044 28 100.0 32 ............................ AAAAATATTATGACCTTGCATGATCTTGGCAG 5104 28 100.0 32 ............................ ATGAGAATCCAAATTCATTGGAGGAATAGACT 5164 28 100.0 32 ............................ TGTTGGATCTGTTTCAGGTGTTGGAAGTGCAT 5224 28 100.0 32 ............................ ATCACCGAACATAAGTTTCATCGAATCGGAAG 5284 28 100.0 32 ............................ ACGCCAAGGTTTCTCTAAGTTGCGCTTGGGCT 5344 28 100.0 32 ............................ CGTTATTCCGCCACAGTCTCGCCCCCGCCGAG 5404 28 100.0 32 ............................ TCAGTTCGAATTGTATTACGCAGATCAGCATA 5464 28 100.0 32 ............................ AAGACCCGATAGTTAGCGATGAGCTTTCTTTC 5524 28 100.0 32 ............................ CTACTGGCGGGGGTAAAACAGCCACGTTCTCA 5584 28 96.4 32 ........................A... CCGGAGTCTTGTCCACAAAAGATAATGCCTTC 5644 28 100.0 32 ............................ GCATTCGTTCTTTTGCTCTTTCACTTTGTTTC 5704 28 100.0 32 ............................ AAAGTAACGAGATTCAAGTAATTGTGCATCAA 5764 28 100.0 32 ............................ TCCGAAAAATGCGCATATTGCGAGAGTAAATT 5824 28 100.0 32 ............................ TGCATTGGTATGCGTAACAATCACATTATGCA 5884 28 100.0 32 ............................ TGAGAGATATTTACTGGTGCATTCATCTTCTT 5944 28 100.0 32 ............................ TAATTGCGAAGATTCTTGTTCACCACAATATA 6004 28 100.0 32 ............................ TAATGGAGAAGACGCTCAAATACCTAAAAAAG 6064 28 100.0 32 ............................ ATAAATTGCAGCGCCTGCAATGCCCATACGAA 6124 28 100.0 32 ............................ TAACGTAAACAGCGCAAGCGCGACAGTAGACG 6184 28 100.0 32 ............................ CCGTTGCAACAGTTGCTAAAGCGACTAATTTA 6244 28 100.0 32 ............................ TGCACGTGGACGACCTGTAACTAAAATTTTCA 6304 28 100.0 32 ............................ AAATCGGGCAAAGCTTCACCTACGAAAGTACG 6364 28 100.0 32 ............................ GTTCCCTAACGCATCTTGAAGCTTCTGGAATT 6424 28 100.0 32 ............................ ATAAAATATAAATGGTTGAATCAACATCGAGA 6484 28 100.0 32 ............................ GAATGTGTATTTAAACAAAGAGCTGAAAAGGC 6544 28 100.0 32 ............................ CGAACTGTGCGTTTAGGTGGTGGAAAAATTAT 6604 28 100.0 32 ............................ TAATCGCCATGCTCAAAGCGGTTTTGGAAATT 6664 28 100.0 32 ............................ TGTAAAAATGTCGCCGCCTGCTGGTGCAAGCT 6724 28 100.0 32 ............................ TAAAGAGGTTATTTATCATGCAAGTTCAATTC 6784 28 100.0 32 ............................ GATCGCATCACGATTACCACCACGACCCACTA 6844 28 100.0 32 ............................ CTAATGATCGGGGCTTTTTTATGGGGTATAGA 6904 28 100.0 32 ............................ ATTATCATTGGTTCGACGTGCACGGAAGCGAA 6964 28 100.0 32 ............................ AAGAAGATAAGCACTTGCTAAAATTAAGTAGC 7024 28 100.0 32 ............................ TACAGTTCATGATTTGCTTGCTGCAGAAATGC 7084 28 100.0 32 ............................ AGGATATGTGCAACCTACAATATTTGTATAAA 7144 28 82.1 0 ......................ATCCT. | ========== ====== ====== ====== ============================ ================================ ================== 66 28 99.7 32 GTTCGTCATCGCATAGATGATTTAGAAA # Left flank : GCGCTGGGCGAAAACATTATATAAACAACTTGCTAAAGGATTTGGAATTGAATTTATCCGCGATGAAGGAAAAAATTCTCACGATACTATTACAGATATAGCCAACAATTACCTAGATCATGGAAATTATATTGCCTATGGCTATGCAGCAGCTGCTTTAAATGGAATGGGGATTAGCTTTGCTCTACCTATATTACATGGCAAAACACGCCGAGGAGGCTTAGTTTTTGATCTCGCGGATCTAGTCAAAGATGCTATCGTGATGCCTATAGCCTTTATATGCGCAAGCAAGGGTTTAAATCAAAAAGAATTTCGAATGCAACTCATCGAGACTTGCCAAGATCAAGATATTTTAGATTATATGTTTAGCTTCATTACTGAAATATGTAGTAAAATTAAATAAAATCAATACCTTAAAAACAACTCTTCTCTACGAAGTATTTTTACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATCTAGAAACAGTCAAAACATTGTAATGAAAATTAACTCATCACATCATCCAATACTTTTACCATTAAAATTCTCTTGTATTTATTTTTAAGAGTCAATTTAGACTCCACTCAACTATCAAAAAAATCCCCGCACAATGGCGGGGATTTTTTTATGATCTGAGATCAGAATGACTTACATCATTCCGCCCATACCACCCATTCCGCCCATATCAGGCATAGCAGGTTTATCTTCAGGAATATCTGTGATCATACATTCAGTTGTTAACATTAAACCAGCAACAGAAGCAGCATGTTCAAGTGCAGAACGTGTTACTTTTGCAGGATCAAGGATACCCATTTCTAACATGTCGCCATATTGTGAAGTCGCAGCGTTGTAACCAAAGTTACCTTCGCCATTTTTCACAGCATTGATCACAACCGAAGGCTCATCACCTGCGTTAGAAACGATTTGACGAAGTGGTGCTTCAATCGCACGACGAAGGATATTTACACCTACAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTCGTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 23033-22163 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDEL01000295.1 Acinetobacter bereziniae strain CHI-40-1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 23032 28 100.0 32 ............................ AACCACATGAACAGATCCATGAGTGACCATTT 22972 28 100.0 32 ............................ CGTGTGGCAGGATTTGCATGATAGCCTTTCCC 22912 28 100.0 32 ............................ TTGATCTAAAACAATTTCAGCCGACCAATCCT 22852 28 100.0 32 ............................ GTTGGCAGGATCGTTGTAGACTTGCATAGCAG 22792 28 100.0 32 ............................ TCCAACCGCAACAAAATATTGAATGCTTTGTT 22732 28 100.0 32 ............................ CAGCCAAAAATATTGACAAGATGTATGTGTAA 22672 28 100.0 32 ............................ CAGCTCGATCAACAGTTGAAAGCCCAAAACAA 22612 28 100.0 32 ............................ AAGGGTACATTCCAGGTTTAAAGGAAATACCG 22552 28 100.0 32 ............................ TATAATGTTTAGAGTGTATGACCATCACGATT 22492 28 100.0 32 ............................ AATTAAATCCAGCTTCATCTATTGTGCATGCA 22432 28 100.0 32 ............................ TGCACTTGAAGTAATGGTGTGTAAGGGTTCTT 22372 28 96.4 32 ...........C................ ATTTCGATCCACATAAACATCATTTCCAAGTT 22312 28 92.9 32 ....G......C................ AGTTCGCGCCTACGGACGCTCTGTTTGTACAG 22252 28 100.0 32 ............................ TGGTAATGCAACAGCACAAGATGATTGGAGAA 22192 28 89.3 0 .........T.........A.......C | CA [22166] ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTACCGTATAGGTAGCTTAGAAA # Left flank : ATGTAATAAGGGATTTAAGCGAAATCAGTAGCTTAAAGCCCTTTTTTTATGCGTATAATAATATGTGATAATATCAGCCTACTAGGTTTAAATGGTGAAATTAGCCGATCTAGCCGAATAATTTACGTCAAGATTACGTCAAGCTTTTGAGTTTAAGATAATGAAAATACCAAAACCGATTAAACGTGGTGAAGTTTGTTTTACTAAGAAAATAATGAAATGTAAGATTTCTTCATTTTCTAATGATAAATTAAATGAGTGGCATTAAAAACATGTGTGAATATTGGAAAATCTTTTAGTGATAAGATAAAAGTAGCTGATTTAGAGTATATAGGCTTAATTAATCAAACAAATATTCTAAAATTTTACCCCAATATTTTTTAACTCTTTAACAACTGAATAAAATAAATAAGTTATAATTGTAAGTAAAAACTTGGGTCATTTGATGATTTTTAGGTTTAACTTACTGTTATTATTTTATTTTTTGTTTTAAAATTATA # Right flank : TTAAAATTAATTGGATATAGGCTTAGTGTGACTGGAAAAGTCTAATCAATTGAAAAATTTCGATATTATGTTTAAAACAAAATTTGACAAAATGAGTGACATAATCTTTGACATTATTACAATTAAAATTTGACTAAATTTATGATTTATAATAATAATGTTTTGACATTTTATTTGACAAAAAATTGACAAAATGCCTGATCAAAGTAAAGTTTGGCTAGATGACACAACTTTAAGAGTCATGACGTACAAGTCCGGCTCTTTTACCTTTCAGCTTGGGTTTGACTTAGAGCAGGTTACACCTATGCTTGATCGTGTAAACGATGCACAGAATAGATTTAATAAAATGCCAAGTTTGCCTCAAATTATAGATCAAGTACAAGAAAAGGTTTTAGCGAGTAGTATTTATAGTACAAATACCATTGAAGGTGGTCAATTTACAGAGCAAGAGACGAAGGAAATTTTAAGACTAGATCCTAAGACAATACAAAAGACCGAGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTACCGTATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.71%AT] # Reference repeat match prediction: R [matched GTTCACTACCGTATAGGTAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //