Array 1 16852-15238 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYVK01000003.1 Salmonella enterica subsp. enterica serovar Anatum strain CVM N31410 N31410_contig_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16851 29 100.0 32 ............................. AACTGAAACCAGGCCAGGTGATATTTATCAAA 16790 29 100.0 32 ............................. CCGAGTGTGAGCAGGCTATTTATGATGAGCGC 16729 29 100.0 32 ............................. GGCTCCGAATGTGAAGAATCCGACGCTATTGA 16668 29 100.0 32 ............................. GCCAGCGCGCCTGCGGCAGCACCGGCAGCAAT 16607 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 16546 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 16485 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 16424 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 16363 29 100.0 32 ............................. CGCGAGCAATCCCATCTGACGTTCCGGAGACA 16302 29 100.0 32 ............................. GTCATCGTTATACACGTGACGGTTTTAATAGT 16241 29 100.0 32 ............................. AAAATGAACAGCCACACATCCGCCAATAAAAA 16180 29 100.0 32 ............................. GCTGTCGGTCGCAGTGTGGATATTGCGATCAA 16119 29 100.0 32 ............................. GGGCTGAACGGCGATCTGATTACGTGGAGTAA 16058 29 100.0 32 ............................. TACGCCAGCTATAAGGGGTACACGAACAGCTT 15997 29 100.0 32 ............................. GCCCGAGAAAAGTTGCTTCTCTTTGCTGCTGC 15936 29 100.0 32 ............................. CATACCCTGTAGTTTCAATTTCCGCAGGTGGG 15875 29 100.0 32 ............................. AGCGCGGAATGATTTTTAACGCTGAGATGGTG 15814 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 15753 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 15692 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 15631 29 100.0 32 ............................. TGTCTTAACTCCATTGCTGAGTCGATTGTGAA 15570 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 15509 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 15448 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 15387 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 15326 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 15265 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //