Array 1 88045-87814 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOE01000001.1 Streptococcus mitis strain BCC36 D8839_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 88044 35 100.0 31 ................................... TAAGCGAGATTGTCTTGCTCGCTGATAAAGA 87978 35 100.0 30 ................................... TGTCCTAGTTTTTCGGCGCAGCTGGCGATA 87913 35 100.0 30 ................................... GAAATGATTAAGACATACCCTGACGGCTTG 87848 35 97.1 0 .....................G............. | ========== ====== ====== ====== =================================== =============================== ================== 4 35 99.3 31 GTTTTTGTAGTCTCCAAAATTATGACCGATAAAAC # Left flank : ATTCTTCAGGCACGAAATTAACGACATAAGCAGCAACTAAACTCGCCCCTACAAGTAAGCCTGTTCCTAGATATTGCCCCGCATAAATATGCCATTTCTGTTTATTCTGTGATAGCTGTGCAAATAAAATAATTAAAATAATTAAATAATCGATACTGGTGGAAATATAAACACCAATAGCAGATATGATTGTCTGTCCCATAAAAACCTCCTGTATTAGTTAGTAATAAATCATCAGATTTTAGGAGAGCACAGACACATTAATTTAGCTATCGCTAGTGGGTAATGTCGAACGTAGGAAAGCATTTTACTCCTCCTCAAAACGTAGTTACAAAGTAATTTCTAACTGGAATTCGGTGACTACTTCCATGTAAAGTATAACATACTATACTTTACTTCGTAAAGTGTAGGCTCTCCGAGGGGGCTTGCAGACAGTTACTCGGCTTGAAAAGCCGAGTAACTGCGCACCTTCATGGTGTCATTAGCTGATACCATTTGAG # Right flank : CTCAATAAAAAAGCCCTCTGAAAATCAGAGAGCTGATTTGAGCTCGGGCTAAAATCCTAGTGAAAAAGATGAAACTCCTTGTGTTCATCGAACACGGTGTCGTTTCCCTATTTTCATACGGATTTCTTACGCCCTTAGCATCATGATTAACGACGAAGTCCTAGAGAGTTGATTAACTCACGGTAACGGTTAACGTCGTTTTTACGCAAGTATGCAAGCAAGTTACGACGGCGACCGATTTTCTTCATCAATCCACGGTAAGTAGCGTGGTCTTTTTTGTGTTGTTTGATGTGTTCGTTAAGGTGGTTGATTTCCCAAGTAAGGACAGCAACTTGAACCTCTACTGAACCTGTATCACCTTCGTGACGTGCATATTGTGCGATGATTTCATTTTTTTTCTCTTTTGAGATTGCCATGATGTTTCTCCTTTTTATTTGGCTTCATCCGAGTGACAGGTTGGCATGCCTGTAACCAAGAAGAAGTTATTTGTCTTTACGACA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTAGTCTCCAAAATTATGACCGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.90,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 8954-9891 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOE01000012.1 Streptococcus mitis strain BCC36 D8839_contig012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 8954 29 100.0 43 ............................. GTTGCTTCCTACAACAAAAGCCAGAACCTCAATTCGTGATTCT 9026 29 96.6 47 ............................T TTGACTGTCTCCTATGAGACTTTTTAATTTCTCCCAGCAGCTCTTTG 9102 29 100.0 43 ............................. AATGTGGGTCTAGGTAATGTGGCTTCTCAACCTGACGTGAATC 9174 29 96.6 35 ...C......................... TCTATCTCCCACGTTAGGATATGATGAAGCAAATT 9238 29 100.0 61 ............................. ATTATCTTTGGGCGACGATCTGAAGTGTCCCAGTGAGTGACTTGAACACTATAAGTTGGAC 9328 29 100.0 43 ............................. GCTTGTCCCCAGAGTCCGTTAGTCTCTGCGTCGAATGAGAAAA 9400 29 96.6 49 ...C......................... TTCAGAACCCACATATAGAACTCACCTTTCGGTGACAATCCTGCTTCTT 9478 29 93.1 46 ...C......G.................. TCACCATCGACCTTATAGTCGATGACCTGAAAATCTTCTTTTGGAA 9553 29 96.6 54 ...C......................... TTGCATTGTTGACAACCCGGCTGACCGTAAATTACTATATCCATTTTAAGTTCT 9636 29 86.2 44 ACCT......................... CTCTTTGCCTTGGTTCATTTTATTTGCAATGCGATGAGCTTTTT 9709 29 100.0 40 ............................. AAACCAGATGGACATATAAATCCATGGTCGGCCAGCACAT 9778 29 100.0 56 ............................. GAATGTTTAACTATAGAGGGATTAAATATTAAATATTGTGTTTCTAGTTTGAATTT 9863 29 86.2 0 .........................GTTG | ========== ====== ====== ====== ============================= ============================================================= ================== 13 29 96.3 47 GTTATACCTTACCTATAAGGAATTGAGAC # Left flank : CATGCTTCAAATAATCGTCCTTATAGTTTGCATCTGGATTTTGCGGATTATATGAAGCCAGTTATCGTGGATCGAGTGATTTTGAGCTTGATCAATAAACATCAAATTAATACTACAGATCATTTTGAAGAAAGGGAAGACGGATCGGTTTATCTGAATCGTGAAGGGAAGTATATCGTCTTGCGAAGTTTTGAGGAAAAGCTACAGACGAGGCTAGTCATGGGAGGCTCGACCTATACCTATGCCCAGCTCATCCAGCACGACATACGGCAGTTTAAGAGAATATTGCAGCAAGATGGGGACTTGAAACGCTTTAAACCCTACAAATACTATTAAAAAGTCGGTCGATCTTTTCGATATTTTGTATATTTTTAAAAAGCTGTCAACCAAGCGTTTTATGAGCGATGGGTACAAAAAGATCGACCGACTTTTTTCATCGAAATCTTGAAAAAAGCCCTATTTTTTGATACAATCAATCTAGAAACAGCGAAAATACTGTT # Right flank : GCTTCAACTGAAAAAACTTGCGGGAGCAAGTTTTTTGTGGTATATTGGAAGTGTTTTCATGAGGAGATATTTGAATCGGAGGTTGTTTATGTCTGAGAGTCAATCTGTATATAGTCACCATATCTTTGTCTTACCCTTTGCGGCCAAGGAACTGGAGTCTTTTCCGAAGTCTTCCAAGTGGAAGAAACTCAGCCAAGATGCTAATGAGCTTCCCTATCTAAACTTAGAAGATGCTGAAAAAAGCGAGCGGTTAAAGTACGCTTATCGGCGATATTTCAATAAAGAAGCAGAGGAGCTGATTTTCCGCAATCCTGAGCTGGTCACAAACTATGCTTATACTGGCTTAGAAAAAGGTGATGTGTATCGGATTTCTTATTATAATCAAATCAACAAACTTGAATGTTATGATCTGACGCTTGACTATATCATGCTTCGTTATTTTCCAAATTTAAAAGCAGGTTTCCTGATTTTTTCAATGGAAAATCGTTACTATGATGAAT # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATACCTTACCTATAAGGAATTGAGAC # Alternate repeat : GTTCTACCTTACCTATAAGGAATTGAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 12880-11960 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOE01000012.1 Streptococcus mitis strain BCC36 D8839_contig012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================== ================== 12879 29 96.6 44 ..........................T.. GAAGTAACTATAACTGTAGTAAACAACATTCCTAAGTTTGAAAC 12806 29 100.0 46 ............................. ATACATTAGTCAATTTTATGATATGTCAAATACAAATATTGAAAAA 12731 29 96.6 46 ..........................T.. GGTAATAAAAATGTTGTTACAAGAAGCTCTTTTCAATAAAGACAGT 12656 29 100.0 44 ............................. GGTTTGTGCTTCGAAAGAAGTCTTAAAATAACTCAGTCTATCAA 12583 29 96.6 48 .........................G... ATTTCTGTTTAAATCCACAGAGGGAAGTAGAGAGCTGGTCTACTACAG 12506 29 96.6 43 .........................G... AATTAAGTTAATTTTACCATTGGGTGACTATGCCTCTTATTAT 12434 29 100.0 40 ............................. ATCAGTCCATGTGACTTAAAACGGAGGTACCCTATATGAC 12365 29 96.6 44 .........................G... TGCTAAATAATGCTTTATTATTGCTTAGAAAAATTGAGGTAAAC 12292 29 96.6 48 .........................G... AGGAAAACCTGACAAGCCAGGAGAGCCTTCAAAACCGAGCGAAAGCAA 12215 29 96.6 50 ......................A...... GAAGCTAAACCACGTAAAGTTGCGTCAGGTTCAGCGGGTGCATCTGCAGC 12136 29 100.0 43 ............................. AATTCAATTATTTGAGCGGGATCTATAGCAGTTCTCACGCTTC A [12131] 12063 29 93.1 46 ............C............G... TTTACGATATTCTCGGTGCAAAACGTACAAAAGTCTATGAGATGAT 11988 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================================== ================== 13 29 97.6 45 GTCTCAATTCCTTATAGGTAAGGTATAAC # Left flank : CTCCAATTGATAAATCTACCTTCTATTATACCATAGATAAGCTGAAAAAGGACGAGTACAGAAGGATCAGCTGCTGGATAGCTGTTCTTTTTCAGTAAATGAAATAGAAAAGAATGTTTTTACTTTAACCCAATAGGCCAATAAATATTCGCAACACTATCAGGAAGTAACAAAAAACTGATCAGCCATCTAACTTAAGCTCTATACTATCTGTGGTTGAAACACGAAAAATTCTCCTACTAAGGGAGTTTTTCTTGATAATTCTTACAAAAGGAAGTAGCTATACTACAACTTTTATTCATATTATATGTTGTGTTTTCTAAAAATTTCAACTATTCCTACCAAACAAAAAGCGAACAAATTCTCAGGCTTCCTAGCAGACATGAATTTGCTCGCTTTTTGGTGCCTTGGAGACAGACAAAGACACACAGACAATATTTTATAGGTAATCTAGAACTTAAAAACCATCCAAACCCACATAATTTAAAATGGAAGACAGT # Right flank : AACAGCATTTTCGCTGTTTCTAGATTGATTGTATCAAAAAATAGGGCTTTTTTCAAGATTTCAATGAAAAAAGTCGGTCGATCTTTTTTGTCCTAACGCTTATAAACAGCTTGGTTGACAGCTTTTGAAAAGGAGACAAAATATCGAAAAGATTGACCGACTTTTTGAAAGATAAAATCAGAAAAATCGCATGGAGAGAACACTTCATGCGATTGATTGACTGACTATGACATCACTTTAATCCCTAAAGAATAAAGTCATTGGATTCTATCATACCGATTTGGATCTTCTTGGCGTATTTTGCGGATTCCAACTGATAAATCTGTACAGAATCTGTCTGAGGTTCTATAATATTGGCTAATTCTTTTTGTAAAGCGCTCAGCTTGGCTGGAGTAATATGCCCTTCAAAGACCGACTTTTGCACATGAACCAAGTATTTTCGGCAAGTTTTCAAAACATTAGCCACGCGCTTGCGATGTACATCGTATGTCAAGATAATA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.62, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAATTCCTTATAGGTAAGGTATAAC # Alternate repeat : GTCTCAATTCCTTATAGGTAAGGTAGAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //