Array 1 14019-16444 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCL01000028.1 Ornatilinea apprima strain P3M-1 contig_31, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================= ================== 14019 37 100.0 33 ..................................... AAGAATCGATTAAGAAACCGATTTCTTTTCCTT 14089 37 100.0 37 ..................................... ATAATGCCCTGGCAATATCCAAAGCAATACTGTATCC 14163 37 100.0 33 ..................................... CCGGCAACCTGTCGGTAATAATTTTTACCGACA 14233 37 100.0 38 ..................................... GCCTCAGCAAGAGCTTTTTCCAGCTCTGCTTTTTCCTC 14308 37 100.0 36 ..................................... AACGGGGGCAGCAACGTAAGCAGCCGGAGAAACCAC 14381 37 100.0 37 ..................................... TAAACTCGGGAACCTTGGTAGGTTCCTCCGCCACCTC 14455 37 100.0 38 ..................................... GCGGTCGCAGGTTTTGCGGTCGCAGGTTTTGCAGTTTT 14530 37 100.0 37 ..................................... ACGCCCTTCGGCCCGATTGACAACATAGCCGGAGATG 14604 37 100.0 35 ..................................... GGCGGGCTCCACCTTTTCAATAGCTTGTAACCATT 14676 37 100.0 35 ..................................... CTGAACATCTACGATGTTCAAATACTCACAAGTTA 14748 37 100.0 44 ..................................... GGAACAAATTCTCCGAAAATGCAGTCATCCTCTGTATATGATGG 14829 37 100.0 37 ..................................... TCGTTTGACATACTGCGTAAGCTCTTTGCCATTGTTA 14903 37 100.0 36 ..................................... TTTACTTTCCATGTTTTTTCCTTTCGCTTGTTTTGA 14976 37 100.0 36 ..................................... CTGGATCTTGTGTTGAATTATAGACGACAAAGCCCG 15049 37 100.0 37 ..................................... TTTCTTCATCACAGGGTATGTACGCAACGGCACCTTT 15123 37 100.0 35 ..................................... CACTGAGCAAACCCCAGAAGATTTTCTTCTGGTTT 15195 37 100.0 36 ..................................... CCCGATGAGCCTGCGAAATAAGCTCTGCTACCATCT 15268 37 100.0 36 ..................................... CTCAACAACCCGAGCGGTGGGCTCAACAGCCACTAC 15341 37 100.0 36 ..................................... AATGTGGTCATGTTCTTATCATTGATTTCAACGAAA 15414 37 100.0 37 ..................................... TGTACGGTAAGTTGATGTTTACCCTGGCCATTTCAAT 15488 37 100.0 42 ..................................... GTGTTTCTGTGGGATCGGCAACGACTGTGGATTTCTTATCCT 15567 37 100.0 35 ..................................... AAATACAAGAGAGGAAGAAGCTGGTGACATGTATC 15639 37 100.0 49 ..................................... CGTTTTTTTTGCCTTAGCCAGCCAATTAGGCGGCGAGGGGCATAGCAGC 15725 37 100.0 37 ..................................... CTTGGCACACGTCAACGTTGACGGCCAGTGTGTGATG 15799 37 100.0 46 ..................................... GGACGAAGGTGTTACCTTGCCTATCCACATAGGCGGTAACATCTGT 15882 37 100.0 38 ..................................... TTTTTTTGGTAAACGCGAAGGGATTTTTTCTAGGTAAC 15957 37 100.0 39 ..................................... TCTGCCAACCAATCGCTACCATGTGTCCGGTGTAGTACG 16033 37 100.0 42 ..................................... GTTGACGCCGATTTTGCTGAGTTTCACGGCTGCTTCTGCAAT 16112 37 100.0 40 ..................................... TTTGGGCGGGTGCCAATGCAAAACCCAAAAGAAGAAACAG 16189 37 100.0 34 ..................................... TTTTTTAGTGTAAGCGTCAACCTCTTGGCCGACA 16260 37 100.0 36 ..................................... GTGTTGATGTTGTACTTCCACCATTCCGGCATGCCG 16333 37 86.5 38 ..C..A..C.A..C....................... CCTTCCACTTGCTTTCTCCGTAACTCAGTTCCCATTGG 16408 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================================= ================== 33 37 99.6 38 GTTACCAATCCATTCCCCCACTCGATGGGATTGAAAC # Left flank : AATTACACAACACGCTGCTTAACTTTGGCACGCCGGTGCAGTACAGCGTGTTTGAATGCCTGTTGACAGACAAAGAAAAAGAAACTATGCTCAAAGCAGTCAAGCGTGTGATCCGCCCACGCAAAGACCGGCTGCGCTTTTACTATATTTGCGCCGCCTGCCTCAAAAAAACGCACATCACCAGCGGGGTGGAAGTAACTACTGACGAGGCGAAATCCTTTGTGGTGGGTTAGTTGTCGACGCGGAAGGGGGGTGGAGCAGAATTTGGACTGCGTCGCCAGCATTGGCAAGAGCCCCCCACCCCTGGCGGTTGGAGCGCTAATTATGGTGAGATTGGCCAATAAAAATAAGCAATATGGCGACGCACAGGCCTTTTTTGAGCATCCCGGCCTGCGTCGCCACACCGCCAGCCCTGCTGCTGGCAGCCCCATAACAAAAAACATCTCCATCCCTTGCCGGTCAGGTTGTATAATAAAAGAAGTGAAACGGCAGATGTGGCA # Right flank : CTTTCTTTTTTAACTTCATAATCGAAAATCAAAACGACCTCATTGGTTTACCACAATAACTGCCAATTACTTTCCCTCAATGCTTTTGCAAGACTCAGTAGTAAAATTCCCATTGTAGTTGACTTAAATCTATTTCACTTCTATACTGAAGAAGCGTTGCTTTCTTTGTTATCTGAATATGAGGTGTGAGATGGATTCCAGGGAGCTTGGACGTCAGGTCTTGGCAAGAAGGAAAGAAAAGGGATGGAGCCAGGAACAACTCGGTAAGATAGCCAATATCTCCAGAAATTATGTATCTCAGATAGAACGAGGCGAAGCTAACAGCATTTCAATTAAAGTGATCAATAAGTTGGCTATAGCTTTAGGTGCTTCACCATCAGATTTAAGTGAGTGTGCTTCTCATTCCACCCTTCTGATTCCACCTTCTCTGCGAGAATATGCACTACAAGACAATATGCCTTATGAAGTGATTGATAAACTTGTCAACCTTCCTAAAAAGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACCAATCCATTCCCCCACTCGATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.80,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 4101-116 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCL01000034.1 Ornatilinea apprima strain P3M-1 contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 4100 36 100.0 32 .................................... GCATACAACGCGCCGCTATTTGCACCGTTTAC 4032 36 100.0 41 .................................... AAAATCCATGTTGCCCGGCGCCAATGGTATCAGCAGCTTGT 3955 36 100.0 37 .................................... ATAATCACGTTTTCGTTTTTGGCGTCAGTCTCGATGG 3882 36 100.0 37 .................................... AAATAAATACGCCCCTGGTTCCCTTTGAGTTAGATTT 3809 36 100.0 38 .................................... TTTCGTAATCTTCGGGTTTTGCCTTGCGATACGATAAC 3735 36 100.0 36 .................................... GCGGGGGCGGATTGTGGATAAAATCCTGATAGGGCT 3663 36 100.0 36 .................................... CTAAAATCTACTTGAAACGCTTCACCTCCCTTCGCG 3591 36 100.0 38 .................................... TTAAGCCGTCATGTACAACGGGCGCTTTATGAAGAGGG 3517 36 100.0 36 .................................... GGAAACTACTCAAACTACGCAAGAGCGATCTGAACT 3445 36 100.0 37 .................................... CTATCGAGTAGGCTTGGGATCACACGACCCCGCAAGA 3372 36 100.0 36 .................................... TCAACCCGCCATGGACGTGGCACATAACATCATCCG 3300 36 100.0 37 .................................... GTTATTAAGGTTCTAATCTTGCGATTCTCCAATACTT 3227 36 100.0 37 .................................... TCATATCCGACCTTCGCGTACATACTACCACGAAAAA 3154 36 100.0 36 .................................... TGACCAAGGCCACAGAATAGGTGGTACAGGATATGG 3082 36 100.0 33 .................................... TCATCATTTTGTGCCGCCTTGGCGATTCTATCA 3013 36 100.0 39 .................................... TTATGCGGTCAATCGCCGCTTTATCAACAATTTTATAGT 2938 36 100.0 38 .................................... ACAGCGTCTGCCCGCCGTGCCTATCCTCGATGACCTTC 2864 36 100.0 38 .................................... GTTTCTTTCTAAATAGGCACTAATCATTTTTGATTTCT 2790 36 100.0 35 .................................... TAAAAAATATTATACTCGGTTAGAACAACATTTCA 2719 36 100.0 37 .................................... CTTCTACGAAATCAGCCTCTTTGCTCTCATCATCTGC 2646 36 100.0 35 .................................... CCTCTCGCGAGGTTGGACGCTTGCTGAAAACCTAC 2575 36 100.0 34 .................................... GCCGATTCTCGCTCGATTCTGGCCTGGTTTTCGG 2505 36 100.0 36 .................................... ATCTCATCGACCAGTTCTGTTACCGGGGTATTCTTG 2433 36 100.0 35 .................................... TCCCGGTGATGTGATTTCCAACGCCACTGAATATG 2362 36 100.0 34 .................................... AGACTTGCGCCTCATTCGCCGGCGCTTGTTCGTA 2292 36 100.0 35 .................................... GATAAAATGTACCGACACGGTATGCCGCTGTTAAG 2221 36 100.0 39 .................................... GGACCTCCTCAGGCGGGACATAGAATACACCCGCCGTGA 2146 36 100.0 38 .................................... TATTTATTTATTATTTATTTGTTATCGTCTTACAGTTA 2072 36 100.0 44 .................................... GTTCCTGGCAGGCCGTCTTGGGTGCAGCGGCACATAAGAAATCC 1992 36 97.2 41 ........T........................... CAATTATTTTTATTACTCTGTTAGATAAATCTTTTTAGTCC 1915 36 100.0 37 .................................... CTCAGCCTTGAGTTCAAACGTGCTTTCCAATTCGTAC 1842 36 100.0 37 .................................... CCCTGTGTGCCCAACAAAGATCGAAAAAAAATGATAC 1769 36 100.0 38 .................................... AACTCTGGCTCTATCACGCGCGCGCCGCAAACTGGACA 1695 36 100.0 35 .................................... GTATTTGATATGCGCGCTGATCAGCTTCCCGGTGA 1624 36 100.0 36 .................................... CGTCATCGTTGATGACGACTGTATTGAACGAGTTGA 1552 36 100.0 37 .................................... TCATAAGCCGCCCTTCTCTGATTTTCAGTGAAAGACC 1479 36 100.0 40 .................................... CAACTAACATACTAAAGATTAGAATGACGAACAGTAGGAA 1403 36 97.2 37 ................................T... ATATTAAATGGATCGGTTCGTACCACTCAATAGAAAG 1330 36 97.2 37 ......................T............. TTGTCCCCGATGTCAAATTTGTCCAGCGTGTTCATTT 1257 36 100.0 39 .................................... CTCGTAAGGAATGGATGACTCGGTGAACCCAAAAGACAG 1182 36 100.0 38 .................................... AGTCGCCGGTTTTCCATGTCGAAATCAAACGCTTCTTT 1108 36 100.0 38 .................................... CCGGTTTATTTCTCGGCGTAAATTTGATGACAAGGTAC 1034 36 100.0 34 .................................... CAATCGGGGGTTTTGTATTCCCAAACGACCCAAT 964 36 100.0 36 .................................... TCAATCGCCGGGATTCCCAACCCGAAAACGGTTCCG 892 36 97.2 39 ...................................T TTCAGGCCGATGTTTTCCCAAATTAGCGAGAGACACCGC 817 36 97.2 38 ...................................T GTACCAGTGTACCATAGACCAAATTTACCGACTGTTAC 743 36 97.2 43 ...................................T CAATCTTTGCGTCGCCTATCTTAAAACTGGTGTAATCTGGATC 664 36 100.0 37 .................................... TTAATGCAATAAAGATAACTAATCCAGCTCGAATGAC 591 36 100.0 36 .................................... GGTCTTATATGACGGTATCATATATGATATTGTTTC 519 36 100.0 36 .................................... AAGAGGGCTATAAGGCTCTGCCATAGATTCTGAAAG 447 36 100.0 38 .................................... TCTCGGCCGTAGTGGTTCATCGCCCGCACTTGCAGTTT 373 36 100.0 39 .................................... AAATTAATACGTGGTATAGACTTGGGGAATCCGAGAATC 298 36 100.0 37 .................................... GGCAATCGAATCCGCCGAGCGCCACAATGCCCGTAGG 225 36 100.0 37 .................................... CCAGATAGTGCCCTATGGCACGCGCAACGCGCAATTC 152 36 83.3 0 ...........................A..GGT.CA | T [121] ========== ====== ====== ====== ==================================== ============================================ ================== 55 36 99.4 37 GTCCAAATCCCCCAATACCCGACAGGGTATTAAGAC # Left flank : ATAACAAACGCCGCGCCAAAATCGCCCGCGAGATGGAAGCCCTGGGCGCGCGCGTGCAGGGCAGCGTGTTCGAGGCCTGGCTCACCCCGGCCGAACTGAAGAAGCTCACCACCCGCGCCGCCAAAGTGCTCAAAGCAGATGAGGACAGCCTGCGCTACTATGTGATCTGCGAAGCCTGCCGCGCCAAAATTCAAACCCAGGGCAAAGCCAAAACCACCCCGCCGCCCGATTTGATGATTGTTTAGCCGAGCCACGGGCTTTTCGGATATAATAGAAAACAACCCGTACATTCACAATTGGACCCTCTGCGCGGCCCCCCTCTTAAAAACAGGAAAAAGAACCGATTTTCGAGGGGGGCCGCGCAAAAACAAACCGGGTGGGAGAAAAACGCGAAAAGCAGGGTATACAGCAGCCCACACTTGCATTTTTCAGGCGTTTTTGGCGTAAGAATGCCCCAAAGCGCCAAAAAACACCCCTCAGGTGGGAGAGCCAAAAGAGCA # Right flank : AAAAAAGTGGACACAAAAAATGTCCTGATCGGGTAAAACTAAAGAAATGGAGATCAGGCATGGAAAAGAGAAATTACCGAGAATACCCACCAGAGTTCAAAATGAACGCGCTGGAA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCAAATCCCCCAATACCCGACAGGGTATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 259693-248122 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGCL01000016.1 Ornatilinea apprima strain P3M-1 contig_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================= ================== 259692 33 100.0 35 ................................. TGGCTGGGAGATGAGTACACGTCTGTTCAGCGCGC 259624 33 100.0 35 ................................. ACGTTGTCGAAGTTTGTTATGACCCATATCAATTA 259556 33 100.0 35 ................................. AGACTTTCGCCAGTCCTGATACCAACAAAACATGC 259488 33 100.0 35 ................................. CATCGCTGCGCACAAACGGAGAATAAAACCCGCAT 259420 33 100.0 34 ................................. ATCACGATTTGGGTTTGATTTACAAACACCTCTT 259353 33 100.0 35 ................................. GATTTACGCGCGGGCAGCTTATTCCGCTGCATGAC 259285 33 100.0 34 ................................. CCAGTATCGGCGCTTCGATTTACAAGAGAGTTAA 259218 33 100.0 35 ................................. GATTATTGGATGCGTACGGCTAAAGCGAGCCGGCC 259150 33 100.0 33 ................................. AACGTCGAGCTGCCAGAAAAGCCGAGCAGCGAC 259084 33 100.0 33 ................................. ACACCTGGCACAACCCCGTCAACGCGGGCAGCA 259018 33 100.0 34 ................................. TCCATTGAACCAGGGGCAGAACCTGGCCGCCTCA 258951 33 100.0 33 ................................. TGTGGTGTCAAGCCGACACCCCTACCGTCTCCA 258885 33 100.0 34 ................................. AGCTTATCGATATCAGGGAGAACAATTGATGAAA 258818 33 100.0 35 ................................. AACAATCCAAATCGGAGATGGAACTTATATTGTAA 258750 33 100.0 33 ................................. CACATGTTCCTTTCCAACCTCTACAATATCCCC 258684 33 100.0 34 ................................. AATGCGCTGTCCAATAGTGATATGCAGGTTTTGG 258617 33 100.0 35 ................................. ACGCGGATATAATCGCCGGTGGTGGTGTTCTTGAT 258549 33 100.0 34 ................................. CGGCACAGAAAACGCGGAAGTACAGCGCATTCTT 258482 33 100.0 33 ................................. GTTAGACTCACTACCTAAATACCTTGACTTGGA 258416 33 100.0 35 ................................. GATGCAGCGAACCGTGCAGGTATCGGTGGTTAACC 258348 33 100.0 32 ................................. CCATACAATATTTGCGACAAAATTTTCTTCAC 258283 33 100.0 33 ................................. CAGTGAGATCCACATCTTCCAACCGATCAGCCC 258217 33 100.0 32 ................................. ACACGCCAACGATATACAATAACAGGCAAACC 258152 33 100.0 32 ................................. TTTATCCCAACAACTCTTCTAAATACATCCTC 258087 33 100.0 35 ................................. ACAGTCTGGGTAATCACAATCTACGCAGAATTCCT 258019 33 100.0 36 ................................. ATCAACTCTTTTTTGACGGCAAACAGCCTGGACAAA 257950 33 100.0 33 ................................. TATCTGATTTTTTGTGTGAAAATGTGAGCGTAA 257884 33 100.0 34 ................................. ATTATATCAATTGTAAATATTTGTACATATACAT 257817 33 100.0 31 ................................. TTTGAGCATGATAGCGGCCGCCTGTTCTTTG 257753 33 100.0 35 ................................. TACGGGTACTATTGATGGAGTACCTCAGAATGTAA 257685 33 100.0 36 ................................. CTTGACTGCCCGGAAAACTGGCGGCGCAAATATCTG 257616 33 100.0 34 ................................. CAGAGAACGAAGCTCGGATTCCATCTCTTCAATG 257549 33 100.0 34 ................................. CTTTCCTATTACGGCTCGCTCATATAGTTCTGTT 257482 33 100.0 33 ................................. CTTAACTCTGTTTCTTTCCAGCTTCGTTAGGGT 257416 33 100.0 34 ................................. ATCTCTCGCCGCGGTACGGTGAATGGCTACGATT 257349 33 100.0 33 ................................. ATTGCGGCAACATAGATCATATATGGTGGAAAG 257283 33 100.0 34 ................................. ATCAAACAGGCTGCCAACCGATTACCCGTTTCTC 257216 33 100.0 34 ................................. AGTCACACCCGGTGCGATTTTGCGTTTTTGTCTG 257149 33 100.0 34 ................................. TCACCCTGCACAACACCAACTTTGGATCCAAAGT 257082 33 100.0 33 ................................. TACCTATATTGTTAAGCGGTTTGCCGTTGTTAG 257016 33 100.0 33 ................................. AGTCACGCCCGGCCCGATTTTTCTTTTTTGTCT 256950 33 100.0 33 ................................. GGCTTTGATATCAATAATGTCACCTTCAGCAGT 256884 33 100.0 35 ................................. TTCAACGCCTTATATCGAAACCGCACAGATTTCTC 256816 33 100.0 33 ................................. AAACCCCACCGGGTACGCGACGCGCACCTGCGC 256750 33 100.0 33 ................................. TTCAATCATTACACCTATGCTAACCGTATGCTG 256684 33 100.0 33 ................................. CCGTCTCAGGTTCTTGATCGTCTCACGCACCTG 256618 33 100.0 35 ................................. CCTTGTAGATAGCCAGGGTGTTAAGCTCTGGCTAT 256550 33 100.0 33 ................................. CTCATCATAATTAAATCTTGAAGCGGTACCTTC 256484 33 100.0 35 ................................. GCGGTAGGGCTTTCGGTAACTTTCTGGATACCGGT 256416 33 100.0 34 ................................. CGATTGCGCGTGCTTGACTCCCTGTTAGTAGAAA 256349 33 100.0 34 ................................. TGCGCGTAGGTAACAAAAATTCCCATTTCCTGGA 256282 33 100.0 35 ................................. TTCAACGCCATATATCGAAACCGCACAGATTTCTC 256214 33 100.0 35 ................................. TCAACCTGGTCAATTCCCCCACGCGCACACCGGTA 256146 33 100.0 34 ................................. TGCTGGAAGACGGGCGCGTAGGTGAAGCGATGTC 256079 33 100.0 35 ................................. GCTCTCGAATCGCGCCTAAACGCTCCATTAAAGCG 256011 33 100.0 35 ................................. ATGGTTTGCCTTTGTGGATGTGGAAAGAGTTAGTC 255943 33 100.0 33 ................................. TAGCCAGATATTTTCGCCGCCAGTTTTCCGGGC 255877 33 100.0 36 ................................. ACCCTCTCTTGTGTATCCCTTGCGGGTCAGTCGATA 255808 33 100.0 36 ................................. ACCGAGTATAAAGCTGACCTGGCAATAACTATCGTC 255739 33 100.0 33 ................................. CTGTGACCACGTCTTTGGAGACGGACTGTTTTG 255673 33 100.0 33 ................................. TCTGCCAGCGCCACTCGTGGCTTTGGCGGCAGG 255607 33 100.0 34 ................................. TGGATGATGTGCCTGCTGGCGCACGGGTGAAAGT 255540 33 100.0 34 ................................. AAGGCTCTAGCTTGGTGGAAGGTCAGATGACTGA 255473 33 100.0 33 ................................. CTCCAGGCTCCAGGGCATGGCGTCATCACCGGT 255407 33 100.0 33 ................................. ACAGCGAGGGTGAATACTGGGTCGCTCTTGGCC 255341 33 100.0 34 ................................. GATGTATTCGCCAGGCCTGTTATAGTCCCAGTTC 255274 33 100.0 35 ................................. GTTACTTGAAAACCAGCCTGTAACGGCTAGACTAA 255206 33 100.0 33 ................................. AGCGAGCAAATCCAGCACGCGGGTCACGAATTT 255140 33 100.0 36 ................................. ATGGTATCTCCCTTGCCGGTATAACGCGACCGGCGG 255071 33 100.0 33 ................................. GGTGGCTGCACGGCCCTTGTCTGGGTCGCAGGC 255005 33 100.0 34 ................................. ACCATCGGTTATGTAGGCGAGGATGGGGTTGAAC 254938 33 100.0 35 ................................. ACCCTCTCTTGTGTATCCCTTGCGGGTCAGTCGAT 254870 33 100.0 35 ................................. CAAGTGTAACTATCCGCCCGTACTAAATGCCACAT 254802 33 100.0 35 ................................. GTCAATGGTCGCGTGATCAACCACGCGGGCCTCGA 254734 33 100.0 35 ................................. TTGGATAATTTGATTGTGGTCATTTGTTCACCCTC 254666 33 100.0 32 ................................. CCGCGATACTCTGCGGGTACATCCATGTCTAT 254601 33 100.0 34 ................................. CGGTGATTGGATCCCAGCTGGACGGTGCGCCGGT 254534 33 100.0 35 ................................. TCGTCTTTGGATAGTTTGTGCCAGTTCGCAAAAAT 254466 33 100.0 34 ................................. GGTTCAACCCCATCCTCGCCTACATAACCGATGG 254399 33 100.0 33 ................................. TGCGTGCCGCACCGCCTAGCATCCGCGCAAAGA 254333 33 100.0 34 ................................. ATTGGTTCTCCATTCCGGCCTATTGCCCGACCGG 254266 33 100.0 35 ................................. TGGTTAAAGAATCTACTACTAGGGACTTCGGAATT 254198 33 100.0 35 ................................. GCGAGAGCGACACGCTCCAATACTCCACGGCGCGA 254130 33 100.0 34 ................................. CCAGGCTGTATCGGATGAATGAACGATTGCAGTA 254063 33 100.0 33 ................................. TCGATCTCTCGCTGGCTCGCCTTCCAACAATCA 253997 33 100.0 35 ................................. ATTTTATGGGGTTATGTGGTCGTCAGTACCGATTT 253929 33 100.0 34 ................................. TTTCGGCGCTGGCCAGCCGTTTTTGATGCGCCAG 253862 33 100.0 38 ................................. TCGGAGTTGCAAAGGCAAATGTTCATACTCAAAAAATT 253791 33 100.0 34 ................................. TGTGGATTGACCAGGAAATGTATAGCCTGATAAA 253724 33 100.0 34 ................................. CACTGGGCTAAGGTCGCTGCGTTGGATGTTGGCC 253657 33 100.0 41 ................................. TACGGCACAGCGCAGCCATGCTGCGCCGGATGGCCGGGGAT 253583 33 100.0 33 ................................. CTTGGTTATTTGCTCACCGGCCGCCGAAACAGC 253517 33 100.0 34 ................................. TTTTTTGTCTGCCAACCAGCAGCCCACGGCCGTG 253450 33 100.0 34 ................................. AACTTCAACCACGATCGGCTGGATCAATCCGTTT 253383 33 100.0 31 ................................. CACGAGGTAGTTATGACACAGTTTATCCCAA 253319 33 100.0 34 ................................. TCACGACAGGGGCGCTTGATCGCCGATTAAATCA 253252 33 100.0 34 ................................. GACAAAGGTTGTAATGGGGAGTACATCTCTCTCG 253185 33 100.0 35 ................................. CATCCTTGCGCTCAAACACGTTGATCTCCGGGCAC 253117 33 100.0 34 ................................. CTTTTGGCTTGCGACCCAGAGCAAGGGCGATCAT 253050 33 100.0 33 ................................. GGGAGCAAAAACGCGCCCAAAACGACGTAATTG 252984 33 100.0 35 ................................. GGGGATAGATCGAAAAGATGCGGGAAATGTCGTAT 252916 33 100.0 35 ................................. AGAATGACAAAATGCGCGGGTTCGTGAACGCTTTT 252848 33 100.0 32 ................................. GCCGCCGTCTGGCGCCAGGTCAAGCACTTTGA 252783 33 100.0 34 ................................. TTACTTAAAGAAAGCATGTTTTATCAGCATCACC 252716 33 100.0 33 ................................. TTTGTCATCATGTTTGTGAAGGAGGGAAAATGA 252650 33 100.0 34 ................................. AAGCTGAATAATGACGCTGGCGCATATTCGCCCG 252583 33 100.0 34 ................................. GCACTCACGATCTTATGGTCATCACCCAGCTTAT 252516 33 100.0 34 ................................. AAGCAGATGGAAGATAGCTTTGATGCCTTATCGG 252449 33 100.0 33 ................................. ATGCCGGTGAACCACACAAACACGCCGGACACA 252383 33 100.0 35 ................................. TATGTCGGATGGGTGAAATCGCAAGAACAATTTAT 252315 33 100.0 33 ................................. ACAGATCGGCAGGCAATCAGTCATCTGACATTT 252249 33 100.0 36 ................................. AGCATTGAGGCTGTTTCGCTGGACACCAATGAAAAC 252180 33 100.0 35 ................................. TGCCGCGCGGCAGACAGACCGCGCAGGGCGGTCAA 252112 33 100.0 34 ................................. TGGAGCCAATAACCGCAGGGGTGCGCATCAATCC 252045 33 100.0 34 ................................. AGCCAACAACGATCTTGCGGGATGGTCTGTGCTG 251978 33 100.0 34 ................................. GCCCTCGATCCACCCGGCCGCGATCAGATTCTCA 251911 33 100.0 35 ................................. GTGAACGCTTTTTGCCAGACCATCGCCGACAATGA 251843 33 100.0 34 ................................. TCTCCAACATGGGGATGAGCGCCGAGCAAACCGC 251776 33 100.0 33 ................................. AACGGCGACGCGGCCGCGTTTAGGTCCATGTTT 251710 33 100.0 34 ................................. CGGTATGTTGACTCCGACAACTACTGGAGAATAT 251643 33 100.0 35 ................................. ACCCTTCATCATGACTACAGGCCGGGCGTGTGAAA 251575 33 100.0 35 ................................. TACCAGGCCGGGCGGGCGATCATGGCTGGGCTGAT 251507 33 100.0 33 ................................. CTGTTCAGCGTCGGGATCAGGGATAACCCATAC 251441 33 100.0 34 ................................. AAGTGAGAGCCACCAACAGTCATACGCCAACCAC 251374 33 100.0 34 ................................. AAGTTGGAAGCGCGCCTCGTCTCGGTTCTGCCGC 251307 33 100.0 34 ................................. GACATTGAGCTGTATGACCAGGCGCTGATCAGCG 251240 33 100.0 34 ................................. TATATCGGCGCGACATCAGAAATCGCCTGGGCAG 251173 33 100.0 34 ................................. AGTTCAGACTGGTAGCAGTCGTCTTTGTGCTGGT 251106 33 100.0 35 ................................. TCTTTCGTGGCATCAAAGATTTCAACGGGGGTCAT 251038 33 100.0 34 ................................. CGCTGTGATTATGTTGCTTGGGGCTGGATCTTTC 250971 33 100.0 34 ................................. CCCTGTCCGGCCTGACCGCCGCGACAGTCTATAA 250904 33 100.0 34 ................................. GATTTGCAGGAACAATCGCGTCATTAGTGCCTTC 250837 33 100.0 34 ................................. TTGAACTCGCGCTACAAGGCGCTGGTGACGCGGC 250770 33 100.0 33 ................................. TGCCATCATTCTGGCGAGTTGGAAGGCCAGGGC 250704 33 100.0 34 ................................. AACCACACTGGATTCGTACTGGTCGCGTTCTTCG 250637 33 100.0 34 ................................. GATTTTTTCGAGGATGCGGCGGCTGATGGTGATA 250570 33 100.0 34 ................................. ATACAATTTTACCCACACTGCAAATGACCGCCTT 250503 33 100.0 36 ................................. AGGCTTTCGCCGGTGCGTATGCCAACGAAACAGGCT 250434 33 100.0 33 ................................. CTACGGAATGGATGCCAAACTGATTGACTTTGG 250368 33 100.0 32 ................................. TCTTGTACTAAATACTCATCATTTTCAGTCAT 250303 33 100.0 35 ................................. TCGTTTTTCTGTGCTGAGGATAATGTTGGCTTCTC 250235 33 100.0 34 ................................. CGGCGTCATTGCCGGCTCGCTCCAATGGCGCAGC 250168 33 100.0 35 ................................. ACCGCCAAGATTGTCGACCTGAACGAACTGCAGGC 250100 33 100.0 32 ................................. ACACCCCCGAATCGCGCCAGTACATTGACCAG 250035 33 100.0 36 ................................. CATCGCGGCTTCCGATAATTTGACTTCCCGTTCCAC 249966 33 100.0 34 ................................. GGGGTCTTTGCCGACCCGCCTGATCAAAGTAATT 249899 33 100.0 33 ................................. TAGAAGAAGCAGGCATACCTTACGAGAAATATA 249833 33 100.0 34 ................................. GAGTGAAACCAGGTTATCCGCCGTCCAGTTCAGT 249766 33 100.0 34 ................................. CAGCAACCCGAATGGCAATAACTAGCATGGTCGT 249699 33 100.0 34 ................................. AGTCGTTCATGTGCTCGTTCATGTACTCACTCCT 249632 33 100.0 35 ................................. CAGTCGCCAGACCTCATTAATAAAACTGGAAAGGC 249564 33 100.0 36 ................................. ACGCGCCTATTGGGCGCAATATGAATTGTGGCTTGC 249495 33 100.0 35 ................................. CGTACAACGATAAAAGCAAACCGTATGGCGTGGTT 249427 33 100.0 34 ................................. TCCTCTCTGGTTGTTGTCCTCCCTGCTTGTGTCC 249360 33 100.0 33 ................................. GATGTGGATTTGCAGCGCAATGGTCATCATGTC 249294 33 100.0 34 ................................. TGGGGCTGCTGTGTTGTGGGTGAGCGAGGTGCAG 249227 33 100.0 35 ................................. CGCCGGGCATCTGTCAGTCAAATTCGACGGCGAGC 249159 33 100.0 35 ................................. CTGGGGCGCGCTTACCGCCGCTGGCATCCCGGCGC 249091 33 100.0 34 ................................. AAATATGCCGTCATTGTTTGCAACGGTCGCATAT 249024 33 100.0 31 ................................. TCCTGGGGGCCGCTGATGATGTAACCGTTTG 248960 33 100.0 36 ................................. CAAAAGTCAACCACCAATTTATCGACCCGATGCAAT 248891 33 100.0 35 ................................. AATGAGATTGAAAGGGTTTGGGACGCCTGGTGTGA 248823 33 100.0 34 ................................. CATGACCCTGGATATTAAAGTCCAGATCAACACC 248756 33 100.0 35 ................................. TATCTGGGGCGTGGAACGCAGCCCGCAATCCACCG 248688 33 100.0 34 ................................. ACGATGCAATGGATATCCTTACCGAGAAGTACGA 248621 33 100.0 33 ................................. GACACTCTGCTCAGCTACTTCGACCCGCGCAGC 248555 33 97.0 32 .........T....................... TCGTTGGTGTGATGGATATGATATTTCAGCAT 248490 33 100.0 35 ................................. CGATGTTAATCAAAAGCGTGATGGCACCGGCTACG 248422 33 100.0 34 ................................. ATTTCACCCCTCACAATCCCAGCGCAGCTGCAAC 248355 33 100.0 34 ................................. AGCGCGGCTTGCTCCAAAAGTTCTGTTAAGCGTT 248288 33 100.0 35 ................................. TGCGATCATTTTTGCGGCGATCTCGTAAGCCTCTT 248220 33 100.0 33 ................................. CGGTTACGATCCACACAATAGGGATCACGTCAT 248154 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ========================================= ================== 173 33 100.0 34 GTCGCTCTCCACACGGAGAGCGTGGATTGAAAC # Left flank : GGATGCTTACCCACCGTTCTTCTGGAGCTAGGAGGGCAAAGTGCTGGTTTTAATCACTTATGATGTCAACACCGAAACAGAGGCGGGTAAAAAACGTCTGCGCAAGGTAGCAAAAGCTTGCCAGAATTATGGGCAGCGCGTGCAAAACTCAGTTTTTGAATGTATTATAGATCCGGCGCGTTTTAAACAATTGCAGTCAAATCTGGAAGTCTTAATCAATAAGGATGTGGATAGTCTGCGATACTATTACCTGGGTGATGAAGAGAACGCGAGAGTAGAACATGTGGGTGCGAAAAAGCCCATGGATCTGAAGGGAACGTTAATTGCGTAAATTGCGAACCTGAAGTGAACAGAATATTTCTGGGGGGTTCGCAAGATATTAGCACCTTAACAACCTCATAATTAACGGTAAAATCAGAAAAATTGGGGAAATATTAAAGAAACAAGAGAAGAAAGAACAATATCTGGTGCTTGTATTTACAAAAGAGCCAGATGTTGCG # Right flank : CTGGTAGTTTGCTGCATCGTGATCGGTGCGCTTTTGTAATGGTTCTATAATGATTTCGAAAACTGTTAGGTGGCTACGTTATATTTTAGAATCTTCAATAGCTGGTATTCTATCTCTTCCCATGGCGCCGCCAGATCAACTGTTTCAATCCTTATAGTCAGATTCTGTAAACCAATCTCCTCAGAAATATTAGTTTGGTTGATGGTTGGATAAAGTAGAATACCGGTGGCATTTTGATTCTGTTCGGAAAGATGTTCCTGTGTTTTAAGGTATGTAAAGAGCTGGTAAAGGTGCGAGGAATCGAAACCAACCTTTCCCCATTGATTCTCAATCAAACTCTTTGCAGTAAATTTTGTATCCAGAATAATGATTCTTCTGGATTTTTTTTCCTGCAGGAGTAAATCAGGCTGCATTACAGGAAGATACTTGCTTGTGTTCGATTCAAACCATTTCAATCGACTTTGCGGGGTTACTTTCCATCCATCCAGATGGTATTGATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCACACGGAGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //