Array 1 7835-6369 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJQ01000135.1 Staphylococcus hominis strain RE2.9 RE2.9_contig_74, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ======================================= ================== 7834 34 100.0 37 .................................. TTATTTGGTAATTCCATATAATCAGTAATATCAATAT 7763 34 100.0 38 .................................. GCTTTTTGTGTGTGAATAAATCGCTTTTAATTCTGTAT 7691 34 100.0 38 .................................. CCGTCATGGTCTAGCATTTCAATATTAAAATGCTTGAT 7619 34 100.0 36 .................................. ATTTCTTGAATTTTTTCTTTTACTAACATTGTTAAT 7549 34 100.0 38 .................................. TGATATAGCGTTTAGCACCTTTACCAAATCGATACAAT 7477 34 100.0 37 .................................. TCTATGTGTTTTGTTCTCTATAACGTCTATAATGCAT 7406 34 97.1 38 ...............A.................. TTATAATCACCATAGAACGCCATGTTTAAAAGGTTTAT 7334 34 88.2 37 ........C......G.A..T............. TCTTCAGGAATAGGTACTGTAACGTTGATTGTTTGAT AT [7329] 7261 33 91.2 38 .........-.T...G.................. AAATTCCCTATTGTAATAGTTGGTATAAGCATATAAAT 7190 34 97.1 38 ...............G.................. ATATAAATAGTTTTCAAGTTCTATAAGTTCGTAAATAT 7118 34 94.1 39 ...............G....T............. GTATGCTCTTTTGTTGCTTTATTTATAAGACCTTTCAAT 7045 34 97.1 37 ...............G.................. TTTAACATTAATTCTTCTTGTTTTCCTAAATTCATGA 6974 34 97.1 38 ...............A.................. TTGGTAAACCAGTAACATTAATACTTGATACTTTAAAT 6902 34 94.1 36 .................A..G............. TTAATTGATGTTTTCATTGCCATTGCGTCGAAGTAT 6832 34 88.2 39 ........C..T...G.A................ TGATAGTAAAATATAAATTATTTTTTTCATTATTCTGGA 6759 34 100.0 38 .................................. TCTTTATCCCACGCTCTAAATTTAGGTATCATCTCAAT 6687 34 97.1 35 .........C........................ GCATTTTTATTTTCAACGATGAGATAAATAATGAT 6618 34 97.1 38 ........C......................... GATACATGAGCTTACTAGATACCATTAATGGTGAAAAT 6546 34 94.1 39 .T.......C........................ AAACCGAGTATGCTTGCAAACGGAGGTTTCATTTAGGAT 6473 34 82.4 38 .........C.....G.A......A...A...C. TCATCTTAATGATCTCAATTAGCTTGGTTAAAAGGAAA 6401 33 73.5 0 .T.......T...-......T..A.AG....T.T | ========== ====== ====== ====== ================================== ======================================= ================== 21 34 94.7 38 TCGATAACTACCCCGTAGAACAGGGGACGAGAAC # Left flank : AGAATTAATATACAGACACCTATGTCTTTTAAATATCAGAGTAGTTACATGATTTTTCCTGAGGTTAAACGTTTCTTTAGAAGTATTATGATACAATTTGATGCTTTTTTTGAAGAATATAAAATGTACGATAAAGAAACATTAGATTTTTTAGAAAAGAATATCAATATTGTTGACTATAAATTGAAAAGTACACGGTTTAACTTAGAAAAAGTTAAAATTCCTTCATTTACAGGAGAAATAGTGTTTAAAATTAAAGGCCCCTTACCTTTTCTACAACTAACTCATTTTTTATTGAAGTTTGGTGAATTTTCTGGATCAGGTATGAAAACAAGCTTAGGCATGGGGAAATATAGTATAATATAATTAGAGTATAGCTGAAATTTAGTTGTCAAAAAATGTGACATTCTGCACTTATAGTCCAAGTGATTTGTCATTATTTTTGACAGCAAATTTTGGCTTTGAAATATTGATGTGATAGGATTTAAAGAGCTATCTAT # Right flank : TAAAAATATATTAGGTTTGATAAAATATTCTGTAAAAAAAAGAGAAACAAAAAAGGGCTTTTATACAAATAATTCTTTGGTATTAAGTTAGAATTAGAAAACTAATACTAAATATAAATAACAGCGAATGGAACGTATATTATTGAGGAATTGGATGCAGTGTAGTGTAATTTCGAGAGCTACTACTTAAGAAAATAAACAATAAGAATTAAATCTGAATCAAGATATAAAAACAAGTATTTTTTACCATAACTACATTAGTAAATACTTTATTATTTAGTATATGGATGAAAGCGAAGTGACAACTAGCAATGCTCCAGATATAGGCATTAGTATTATGAAAGAACAAGATTACCATCTAGAAAATGTAGCTTTTAAAAAAACTGAAGATAAAGTAGATCATTCTGTGAGTTTTTTATGTTAATAAGTCTGAACATGGGGATGTAGTATAAATACGGTTTAGTAGAAACTCGCGCCGAAGCTGTAGATGAGATTGACTA # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.48, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGATAACTACCCCGTAGAACAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 9371-10124 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWJQ01000148.1 Staphylococcus hominis strain RE2.9 RE2.9_contig_86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 9371 36 100.0 34 .................................... GAAAGTTATTTCATCATGGTTAGATGTCTCAAGT 9441 36 100.0 36 .................................... GTTAAAATATCGCCATCAATTGAAATTGAATATTTT 9513 36 100.0 34 .................................... GTAAAAAATGAAAAAGGTATTAATAACGAACTTT 9583 36 100.0 37 .................................... CACGAAATTTCAAAATCGAATTATCATGAGAAATTCA 9656 36 100.0 35 .................................... AGAATGTAAATTGCTTCGTTTAAATCTTCCGTAGT 9727 36 100.0 35 .................................... TTTTTTCATCGTGACGCTCTTTTTTTAACCTTTCT 9798 36 97.2 37 ..........A......................... CTTAGATCATCATTCAAACTACGTGTCCCGTCCTCGT G [9826] 9872 36 97.2 37 ................A................... ATGAAAGTTGGTAACTTACCGTCTTTCCCTTCGAAAC 9945 36 94.4 36 ..........A...........C............. AGTGATAACAGGCTTTCGTATTTGTCCATTCCTAAA 10017 36 94.4 36 ...................A..C............. CACTTCTGCCATATCATTGATGAGTTCATCACGTTT 10089 35 86.1 0 ..........A...........C.......-...GT | G [10113] ========== ====== ====== ====== ==================================== ===================================== ================== 11 36 97.2 36 GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Left flank : ATATTTTTCTTCAAATGAATCAGATACATATTTTAAAAATATTAGACCTAACGCTACATTTTTATATTCAGCAGCATCCATACTTCCTCTCAATTTATCGGCAGCCTGCCATAACTTTTCTTCAAAACCTATTGTTGTCATTAATAACACCTCTTTAGATTACTATTAGTTTAAATATATCAAAAAATAAATACTTATTGTGTATGGCTTTTTTTATTATTTTAATATAGAAGTATATTTTTACTTTCCTGAACAGTGGTCACTAATTTTATCTCTTATTTTAAATTAAAAAGGAAGAAAAAGTTAAATTTATATTAAGTTTTATATATGAGTAATTATTAACATATTAAATGTAGTATACTCTTAATATAAGGAGAATGATCATAATATTTGTCAAAAAAAGTGACATTTCATATAGTAGCATGGTGTTAGTTGTCACAATTTTTGACAGCCAAAATAATACTTGAACCCTTGTGGTTATGCTATTTATAAAAGTATCG # Right flank : TGTAAATTTAATTACACTCTAAAATTTGTAAATTTTTAATGGAATACGCATTGATTAATTTTTAGGGGATGGAAAATGAAAGATGTTATTTATGTAGAAAATCATTACTTTGTTACCGTGAAAGAAAATAGTATTAAATTTAGAAATGTAATAGATAAAAGTGAGAAATTTTACTTGTTTGAAGAAATAGAAGCGATTATTTTTGATCATTATAAAAGCTATTTTTCTCATAAGTTAGTAATTAAATGTATTGAAAATGATATTGCTATTATTTTTTGTGATAAAAAGCACTCTCCATTAACGCAACTTATTTCTTCTTATGGTATGACTCATCGTCTTCAAAGGATTCAAAGTCAGTTTCAATTATCCGGGAGAACTAGAGATAGAATTTGGAAAAAGATTGTTGTAAATAAAATTATTAATCAATCAAAATGTTTAGAAAATAATTTACATAATGAGAATGTGAAGTTATTAGTAAACTTAGCAAAAGCTGTTAGTTC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATCGATAACTACCCCGAAGAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GATCGATACCCACCCCGAAGAAAAGGGGACGAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : III-A [Matched known repeat from this family], //