Array 1 388639-387637 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITT01000001.1 Nitrospirillum amazonense strain BR 11140 Ga0314212_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 388638 29 100.0 32 ............................. CGTTATTGATGACTGTCTTACCGGCACCAGAA 388577 29 100.0 32 ............................. CCAGCGCTACTGGACCGCCGGCACCTTGGCGC 388516 29 100.0 32 ............................. CCCTGCGCTTTGGTCGCCCCGCACTGGCACCC 388455 29 100.0 32 ............................. TTGATTTCCATGCGCCCCAGAGCCTCGTCGAA 388394 29 100.0 32 ............................. CCTGCGCTGGCGCTGGAGAAATGGCTGCGGTG 388333 29 100.0 32 ............................. CGTCTTGGGCAATAAGCCCTTTTTCTTCAGAC 388272 29 100.0 32 ............................. GGTAATAGCGCGACGCGTCGCTATTTGGCGTA 388211 29 100.0 32 ............................. CCGGAGATCGCGGCCTACGTCCATGTGGTCTG 388150 29 100.0 32 ............................. AGACGCAGACGCCGACCGTATCCGCAGTCTGT 388089 29 100.0 32 ............................. CCTTCATGCGCCGCAATGACCAGTGCACCCCC 388028 29 100.0 31 ............................. GACATCGCGCGGCGCAAGGATTTGTGGTGTC 387968 29 100.0 32 ............................. ACGGCCGGCTATCGCGCCTTTGTGGCAAAGAT 387907 28 89.7 32 ......T............A.-....... AGCCGAGAAGCTCAGCCAGGGTTTCCTGACTC 387847 29 96.6 32 ..................A.......... GGCATCGGCGAAATCGAACGGATTGCGCGGAC 387786 29 96.6 32 ...........................T. ATGCCTGACACCGCCATAGCGCTATTACCCGC 387725 29 82.8 32 ...CT....A..T...T............ TTGGTGACGATGCTCTTCATCACGTCTTTGAA 387664 28 72.4 0 .........-....CC..C..G.TCC... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 96.4 32 GGTGCCCCCGCACCTGCGGGGATAGACCC # Left flank : AAGCGCAATCCGGTGGCGTATCCATTGACCGCATAGTCCGCCGGCGAGCTGCGCGACTTTTCCGGCAAAAAGCCGTGATCCCATCAATGATCGACCACATGAAAATTCTTCTCAGGCTGGATGGGACTGCGGAGGAGGCGAAATAATGCCTATGGCCGTGGTCGTCACTCGTGACGTGGAAGATCGGTATCGGGGATTCCTCGGATCGGTGATGCTTGAACTGGCGCCAGGTGTTTACGCCCATCCACGGATGAGCATGGCGGTTCGCGGACGTGTCTGGGCGGTGCTCTCTGACTGGTATTCCTCACTGAGGAGGGGCAGCATCGTCATGACGTGGGCGGAAACCTCCGCCGATGGCGGTCTTGGCTTAACCTCGCTTGGGGAGCCGCCTAAAGACTTAGTTGCCCACAACGCCATGCTGTTGGTTCGCCGGCCGCTACGGTCTCCTTGACAGCTTAATTCTTGGACATTGTAAATATAACAACGCCTTACTGGGCAGA # Right flank : GGTGGCCGCACAGGCACCTCCCGTCCCCTCCGCTCCGCGCATCGCCGGGGGCGCTGCGCTCCGGGGACGGGGCCCTCCTATGCGCTACCGGGACAACCCGATTGCCAGCTCATCACTGGGGTCCCCTATTGGGCGCCGATACCGGGTCCCGTTACGCCGCCGATTGGCACCGAAATTCACCCGGCAAATATTAGTGCGGTTGCTGGCAGGAGAAAAACCCGGACTCTTTCAACACCGTGAAATCAAACCGCGGCCCGGGTAAAGACCGTAGCGGGAATGTCGAGATGCCCATGGCTGGGTCCCTGGTGGTGTACGGGAGTGACGCCCGCGTGACCAGCCTGCCTTCGCACCGGACCTAACCTTTAGGACTAACTGTTTCGATTGTAAACTATCGCTCATAAAGGGTATTTCTGGCCGCGGCATATATCGGCGGTCGGCATTGCCCTGTGGTCCTGGGCTTGGCGGCCTCCATCCGGGAGAGCGAATTTGACCGAGCCCGA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTGCCCCCGCACCTGCGGGGATAGACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [23-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 397917-398678 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITT01000001.1 Nitrospirillum amazonense strain BR 11140 Ga0314212_101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 397917 29 96.6 32 A............................ CCAGCGCCATGGAAATACTCAGCCGAGTAGGC 397978 29 100.0 32 ............................. GACAGATTGTTCTGGCTGTTATCGACGTAGCT 398039 29 100.0 32 ............................. GTGTTTGGCAGAAGGGCAACACGGGCCTATAC 398100 29 100.0 32 ............................. CAACACGGTCATTACCCAGCTGATCGTTGATG 398161 29 100.0 32 ............................. GCCGACGCTTGTTCCTCGTTCAGGCTATCCAG 398222 29 100.0 32 ............................. AGTCCGCCACCTGTCCGGCGCGACCTCGCGCA 398283 29 96.6 32 ....T........................ TACTACAAGACCGATCCGTTCTTGCAGGCCCT 398344 29 96.6 32 ....T........................ GTCCACGCCATCCTGTGCCGGCTTGAGGAACG 398405 29 96.6 32 ....T........................ GCCAGCAAGACTGGCGACCCTGCGGCCATCGT 398466 29 96.6 32 ............A................ CGCCAGGAGTGGGAACGCCTGGAGGAAGCGAC 398527 29 100.0 32 ............................. GTGTCGGACGAGGAGGTGGAACTGCCGGAATA 398588 29 96.6 31 ..............T.............. TACCAGTTGGCCAGCAGCACGGTGACGGGCG 398648 29 93.1 0 C...........................T | C,G [398651,398672] ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.9 32 GGTTCCCCCGCAGGCGCGGGGATACACCC # Left flank : CGGCGACGTCAGCGCTGTGGTGGGCGAGATGGTGGCTGGTAAGGCTCTCGTCGTCATACTTTCCCCAGGCGTTGCCGCGGATCACCATCAGCTCCTGCAGTCCAGTATTCAGGATGCTTATAGAGTATGTGCAATCATGCGGTTTCTCCATCTTAAATAGCCGTCTATATGAACGGCAACTGAGGTGCGAAGACGGCTTATGGCCTGGAATGGGCGGGAAATGTGGCCAAGCGGAACGGGCTTCCACTCCGACAGCCTACCTGGGCGGCATGCACACACCCGCCTCTCTCGGGCCACCGCCAGTTCCATGTTAACGCTCATCCGCTAGCGGCTTTCGCTCAGACTTTTGGTCGGTGCGATGTCGGGCGGAGGCCGGAAGAAATTTGCCTTCATTCATGGAAGCACCGGTATAATTAGGTGCTTGCAACAGGGCTCATGGGCGGGGCTACGCGAGCGCAGAATCTTTGACAAGTGAAGTCATTCAGCCATTTAAGGGCCAG # Right flank : TATGGCAGCTGCTAAATGACAGCGACTGCACAATGTGGCCTGCGCACCTGCTTGGCCCCTCAATTCCGTTGCCTCCACTGTAAGGCGTGGCGAAGGCCTTGCCACCTGGACATGGGCATGCCGCCGGGGGGGGCCAGCCGAAGTGGAGCCCGTGGACAACGCCAACCCGACGAGCCATAGCCTTTTCACTGTAGGCTACCTCCAACCACCATCGCCAAGCGCCCAGGCCCCCGCCACAGCCGTCAGGTACCCGTCACAAACTTCCAGCCGTCGCTGTACTTGGAGAGGATCGCGGTGCCGTCGGCCGGCTCCTTCATGCCATCGATGTCGAGGCCGGCTTTGGCCCAGGAGGGGGCGTCGGTGATCTGGTAGCGGTATTCGACATTCGCCCCTGCGTCCTGCTCCTGGTAACGGACGATCGCCACGACCTGCTTGTGGCCGTAGCAGAATCCGCCCTTCCCCCAGACGCCGGCGGCCTTGCCCTTGTCCGTCAGGTCGAC # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCCCCGCAGGCGCGGGGATACACCC # Alternate repeat : GGTTTCCCCGCAGGCGCGGGGATACACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 16819-17515 **** Predicted by CRISPRDetect 2.4 *** >NZ_VITT01000052.1 Nitrospirillum amazonense strain BR 11140 Ga0314212_152, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 16819 32 100.0 34 ................................ AGCACCGCCATGCGCCGTCGCTTTGGCGAAGAAG 16885 32 100.0 34 ................................ AGGTCGAGCACCGTGCCACCACCCAACCTGGCGC 16951 32 100.0 35 ................................ TGATAAGTTAGGCTGAATTCGCCCGTCAGGTAGTT 17018 32 100.0 35 ................................ CTGCTTCCCGGTATCCGCAAGATCAAGGGCGACTA 17085 32 100.0 35 ................................ GACATCACGCCGCTGCGGACCACGACCAACAACGC 17152 32 100.0 34 ................................ ATCGACAACGCCCCACCCATGGCCGTGCGCCAGA 17218 32 100.0 34 ................................ GACCAAGCAGGTCGGCGGCGAGGAAGGCATCAAG 17284 32 100.0 34 ................................ GCCTACGAGTGCGCGGGAATGACCTTGACACCAG 17350 32 96.9 35 ......................A......... GCCGTCACCGTCAGGTTGGACCCGCCGCCCTTGGC 17417 32 96.9 35 ...........C.................... ACGAGCTGGTCGGGAAAGATGTGCTGCTTGACCGC 17484 32 93.8 0 .............................T.G | ========== ====== ====== ====== ================================ =================================== ================== 11 32 98.9 35 GCCGCCCTCCGTGCGAGGGCGCGGATTGAAAC # Left flank : ACCCTATGCTGATGCTGATCACCTACGACGTGAACACCGAGGATACCGCCGGCCGGCGCCGCTTGCGCCGTGTGGCGCGGGCCTGTCAAGATCATGGGCAGCGTGTACAATTCTCCGTCTTTGAATGCGAGGTTGACCCCGGGCAATGGGTGGCCCTGCGCGCCCGGCTGGTCGCGGAAATCGATCCTGCGACGGATAGCCTGCGTTTTTACCACCTGGGCGCCAACGCCCAGCGGCGTATTGAGCACATCGGTGCCAAACCAGCCCAGGATCTGGGCGGTGCCTTGATCTTCTGACGCGCCCACGCCGGGCGGCCGAGATCGCGCGAACCGGAAGCACACACCTATTTCCTGGGAGGTTCGCGCACCGAATTTTCCAGCCGTTGTCAGAGCCTTACGGTAAAATGGTTCGCTGGCTCGTGAGTGGCGATGCCCGACAAGGCAAGGGTTCGCGTAAACCAAGTGGTTTTATGTTCTTGGACAAGTGCATAGACTGACACA # Right flank : GCAGTACTGGCCCGATTACGGCTGGATTGGGCGGCGGAGTTGAAATGGCCCCGCCGCCCGGTTCGTCATTGCTTAGAGGGTCACAAGGACGGCTCCCCTCACTGCATCGTCCCCACCGGCACCGCCACGGCGACGGCGGCCCCCCTTTCGGTTTCATCCAGCGCCAGCAGCGGCCCGACCAAGTCACCCAGCCGCATGGGCCGTCGGGCGGTGCGGGCTCGACGCCGGGCGGCCCTCACCCACATCATGATGTGCGCCCCGGTGGCCCCCGCCTGGGCGGCGATGGCGGCCGCCTGGTAGAGGTCGGTGTCCTTCAGGTCCGTCCCCAGGTGGAACCGCAGAATGCGGATCAACGCCGCGATATCGGGCAGTGAGATGGTGACCACACGTTCCATCCGGCCGGGCCGCAGCAGGGCGGGTTCCACCGCCTCGGGCAGGTTGGTGGCGCCGACTACCACCACACCCTTCCTGGAGGCCATGCCATCCAGGTGCTGCAACAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCCCTCCGTGCGAGGGCGCGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.50,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : NA //