Array 1 22564-20965 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLR01000101.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008087 CFSAN008087_213, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22563 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 22502 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 22440 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 22379 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 22318 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 22257 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 22196 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 22135 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 22074 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 22013 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 21952 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 21891 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 21830 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 21769 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 21708 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 21646 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 21543 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 21482 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 21421 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 21360 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 21299 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 21238 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 21177 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 21116 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 21055 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 20994 29 96.6 0 A............................ | A [20967] ========== ====== ====== ====== ============================= ========================================================================== ================== 26 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCTATCCCCT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5368-6860 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKLR01000192.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008087 CFSAN008087_324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5368 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5429 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5490 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5551 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5612 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5673 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5734 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5795 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5856 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5917 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5978 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6039 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6100 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6161 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6222 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6283 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6345 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6406 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6467 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6528 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6589 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6650 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6711 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6772 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6833 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //